Error in motifscan hdwgcna

[nitinsai1]

Hello,

I used seurat pipeline to analyze single cell RNA-seq dataset. Recently I sarted working on hdWGCNA specific TF Motif analysis. I followed motif analysis tutorial from hdWGCNA. Unfortunately I encountered an error.

I loaded hdwgcna output file .rds for TF analysis
When I executed the following command

seurat_obj <- MotifScan(
m,
species_genome = 'mm10',
pfm = pfm_core,
EnsDb = EnsDb.Mmusculus.v79
)

It showed an error as follows
Error in match(x, table, nomatch = 0L) :
'match' requires vector arguments

Could any one help to solve this error.

Thank you,
Sai

[smorabit]

Hi,

Please follow our new tutorial for motif and transcription factor network analysis. If you have any issues from this, please open a new issue.