diff --git a/bio/seqkit/wrapper.py b/bio/seqkit/wrapper.py index a1bc7f38fa..16dd34aae9 100644 --- a/bio/seqkit/wrapper.py +++ b/bio/seqkit/wrapper.py @@ -38,9 +38,9 @@ if snakemake.params.get("out_bgzip"): - input = input + " | bgzip --threads {snakemake.threads} > {snakemake.output[0]}" + input = input + f" | bgzip --threads {snakemake.threads} > {snakemake.output[0]}" else: - input = "--out-file {snakemake.output[0]} " + input + input = f"--out-file {snakemake.output[0]} " + input shell( "(seqkit {snakemake.params.command}"