From 30e4ea19fcb213a31aed5d659f092e8b1dce5ceb Mon Sep 17 00:00:00 2001
From: Luiz Irber <contact+github@luizirber.org>
Date: Wed, 12 Feb 2025 09:28:39 -0800
Subject: [PATCH] Update niffler to 3.0.0

---
 Cargo.lock          | 36 ++++++++++++++++++++++++++++++++----
 src/core/Cargo.toml |  2 +-
 2 files changed, 33 insertions(+), 5 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index 4f07e4830..a780d8b8f 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -73,6 +73,16 @@ version = "1.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "7b7e4c2464d97fe331d41de9d5db0def0a96f4d823b8b32a2efd503578988973"
 
+[[package]]
+name = "bgzip"
+version = "0.3.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b64fd8980fb64af5951bc05de7772b598150a6f7eac42ec17f73e8489915f99b"
+dependencies = [
+ "flate2",
+ "thiserror 1.0.69",
+]
+
 [[package]]
 name = "binary-merge"
 version = "0.1.2"
@@ -185,11 +195,21 @@ version = "1.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "a2bd12c1caf447e69cd4528f47f94d203fd2582878ecb9e9465484c4148a8223"
 
+[[package]]
+name = "bzip2"
+version = "0.5.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "75b89e7c29231c673a61a46e722602bcd138298f6b9e81e71119693534585f5c"
+dependencies = [
+ "bzip2-sys",
+ "libbz2-rs-sys",
+]
+
 [[package]]
 name = "bzip2-sys"
-version = "0.1.11+1.0.8"
+version = "0.1.12+1.0.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "736a955f3fa7875102d57c82b8cac37ec45224a07fd32d58f9f7a186b6cd4cdc"
+checksum = "72ebc2f1a417f01e1da30ef264ee86ae31d2dcd2d603ea283d3c244a883ca2a9"
 dependencies = [
  "cc",
  "libc",
@@ -790,6 +810,12 @@ version = "1.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "830d08ce1d1d941e6b30645f1a0eb5643013d835ce3779a5fc208261dbe10f55"
 
+[[package]]
+name = "libbz2-rs-sys"
+version = "0.1.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0864a00c8d019e36216b69c2c4ce50b83b7bd966add3cf5ba554ec44f8bebcf5"
+
 [[package]]
 name = "libc"
 version = "0.2.162"
@@ -976,10 +1002,12 @@ dependencies = [
 
 [[package]]
 name = "niffler"
-version = "2.7.0"
+version = "3.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9e84f25af5326bacf3cbc3b9d2586d096426b10c889050cab891f89c9cb65932"
+checksum = "62d3115cc93dac9fabdfd25f7d4fda51ad4a959fb4667d39af20f70bddfb3574"
 dependencies = [
+ "bgzip",
+ "bzip2",
  "cfg-if",
  "flate2",
  "liblzma",
diff --git a/src/core/Cargo.toml b/src/core/Cargo.toml
index 7dc98d7a1..e9ae30840 100644
--- a/src/core/Cargo.toml
+++ b/src/core/Cargo.toml
@@ -42,7 +42,7 @@ md5 = "0.7.0"
 memmap2 = "0.9.5"
 murmurhash3 = "0.0.5"
 needletail = { version = "0.6.1", default-features = false }
-niffler = { version = "2.7.0", default-features = false, features = [ "gz", "zstd", "lzma" ] }
+niffler = { version = "3.0.0", default-features = false, features = [ "wasm" ] }
 # declare liblzma here to allow static compilation and fix macos linking issues in Python wheel
 liblzma = { version = "0.3.6", features = ["static"] }
 nohash-hasher = "0.2.0"