DESCRIPTION

Package: SpectraToQueries
Title: Spectra to queries
Version: 0.0.0.9000
Authors@R: c(
    person(given = "Adriano",
           family = "Rutz", 
           email = "adafede@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0443-9902")),
    person(given = "Sarah", 
           family = "Szwarc",
           email = "sarah.szwarc@universite-paris-saclay.fr",
           role = "ctb",
           comment = c(ORCID = "0000-0001-6369-5522"))
  )
Maintainer: Adriano Rutz <adafede@gmail.com>
Description: SpectraToQueries provides the infrastructure to translate spectra to queries
License: GPL (>= 3)
URL: https://github.com/spectra-to-knowledge/spectra-to-queries,
    https://spectra-to-knowledge.github.io/SpectraToQueries
BugReports: https://github.com/spectra-to-knowledge/spectra-to-queries/issues
Depends:
    R (>= 4.3.0)
Imports:
    BiocGenerics (>= 0.48.1),
    BiocParallel (>= 1.36.0),
    MsBackendMgf (>= 1.10.0),
    purrr (>= 1.0.2),
    Spectra (>= 1.12.0),
    tidytable (>= 0.11.2),
    tibble (>= 3.2.1)
Suggests: 
    BiocManager,
    knitr,
    R.utils,
    spelling,
    testthat
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
ByteCompile: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder:
    knitr
biocViews: knowledge extraction, spectral information, querying system
X-schema.org-keywords: knowledge extraction, spectral information, querying system
Language: en-US
Collate: 
    'SpectraToQueries-package.R'
    'create_dir.R'
    'create_matrix.R'
    'filter_matrix.R'
    'fix_binned_mzs.R'
    'generate_combinations.R'
    'harmonize_mzs.R'
    'normalize_peaks.R'
    'perform_query.R'
    'perform_list_of_queries.R'
    'spectra_to_queries.R'