.gitignore

# Custom -- docs build files
docs/covasim*.rst
docs/modules.rst

# Data files
data/epi_data

# Other files
.idea

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache
*.out

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# Node.js and NPM
node_modules



########################################################################
#
# Based on DIME .gitignore template. Follow the instructions in the URL
# below to set up this template in your own repository
# https://github.com/worldbank/dime-github-trainings/tree/master/GitHub-resources/DIME-GitHub-Templates
#
# Note that if you are using GitKraken, you need to use version 5.x or more
# recent for this template to work properly
#
########################################################################

#######################
# Start by ignoring everything, and below we are explicitly saying
# what to not ignore
*

#######################
# List of files with GitHub functionality anywhere in the repo
# that we do not want to ignore

# These files include GitHub settings
!.gitignore
!.gitattributes

# Keep markdown files used for documentation on GitHub
!README.md
!CONTRIBUTING.md
!LICENSE*

#######################
# For performance reasons, if a folder is already ignored, then
# GitHub does not check the content for that folder for matches
# with additional rules. The line below includes folder in the
# top folder (but not their content), so that anything matching
# the rules below will still not be ignored.
!*/

#######################
# The following file types are code that should always be
# included no matter where in the repository folder they are
# located unless you explicitly ignore that folder

# Stata
!/**/*.do
!/**/*.ado

# R
!/**/*.R
!/**/*.Rmd
!/**/*.Rproj

# LaTeX
!/**/*.tex
!/**/*.bib

# Python
!/**/*.py
!/**/*.ipynb
# Still ignore .ipynb files in checkpoint folders
.ipynb_checkpoints

# Matlab
!/**/*.m

# Markdown
!/**/*.md

# Julia
!/**/*.jl

# Java
!/**/*.java
!/**/*.jar

######################
# Including some of the input data which corresponds to important parameters
!/configs/*.txt
!/configs/*.csv

#######################
# Include some additional file formats in any output folder. You might have
# to change the name of the Output folder to whatever it is called in your
# project, but we strongly recommend that you only include these files in
# a subset of the folders where you are certain no private data is ever stored.
!/**/Output/**/*.txt
!/**/Output/**/*.csv
!/**/Output/**/*.xml
!/**/Output/**/*.eps
!/**/Output/**/*.svg

#######################
# Include all the files with passwords or tokens here. All files named
# password or passwords are with this template ignored no matter which
# format you are using. Additionally, all content in any folder called
# password or passwords are also ignored. NOTE that your project might be
# using different names and then you must edit the lines below accordingly.
password.*
passwords.*
password/
passwords/