Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Unexpected error during processing #16

Open
ryshi06 opened this issue Oct 5, 2021 · 2 comments
Open

Unexpected error during processing #16

ryshi06 opened this issue Oct 5, 2021 · 2 comments

Comments

@ryshi06
Copy link

ryshi06 commented Oct 5, 2021

Hi there,

I tried to use METAL to process a single file, but during the processing, I got errors like duplicated detected, only the first occurrence is used. But I have checked the original file, and there are no duplicated SNPs in the file. Thus I am confused why I got this error. And then, the program crashed.

Best,
Ruyu
@soren-rand
Copy link

Hi Ruyu
I have experienced in the same, and I am not able to give you an unambiguous answer to why. However, from my experience it comes from multiallelic variants. Could be a SNP which at the same position also has an INDEL. Hope it could help :)

Soren

@ryshi06
Copy link
Author

ryshi06 commented Jan 13, 2022

Hi Soren,

Thanks for your advice!

Best,
Ruyu

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@ryshi06 @soren-rand