Hi, about the STDERR/EFFECT_PRINT_PERCISION

[seisland1]

Hi, statgen :)

I did run below command lines
:
SEPARATOR TAB/MARKER SNP/ALLELE E NE/EFFECT BETA/PVALUE P/DEFAULTWEIGHT 7639/FREQLABEL FREQ/
PROCESS Meta_CAVAS_entire.txt

SEPARATOR TAB/MARKER SNP/ALLELE E NE/EFFECT BETA/PVALUE P/DEFAULTWEIGHT 4601/FREQLABEL FREQ/
PROCESS Meta_KARE_entire.txt

EFFECT_PRINT_PRECISION 3
STDERR_PRINT_PRECISION 3
AVERAGEFREQ ON
OUTFILE Entire_beta.tbl
ANALYZE

QUIT

but I got error message like
:
Processing file 'Meta_KARE_entire.txt'
WARNING: No 'N' column found -- using DEFAULTWEIGHT = 4601
Processed 40 markers ...

Set print pecision for Effect to 3 ...
Set print pecision for StdErr to 3 ...
ERROR: Meta-analysis in progress - before issuing this command, use CLEAR command
ERROR: The command you issued could not be processed ...

Executing meta-analysis ...
Complete results will be stored in file 'METAANALYSIS1.TBL'
Column descriptions will be stored in file 'METAANALYSIS1.TBL.info'
Completed meta-analysis for 48 markers!
Smallest p-value is 3.49e-216 at marker 'rs651821'

Can you kindly help me about this issue?
I really appreciate your program.

I lookforward to your answer

Sincerely,

Sei Kim

[seisland1]

Also, my results file name is not what I set.
And this is the result files' header
"MarkerName Allele1 Allele2 Weight Zscore P-value Direction"

I wanna get effect and SE from result. :)

Thank you