From d424766013c1cd26d739a601c59dde64135422f8 Mon Sep 17 00:00:00 2001 From: Andy Boughton Date: Mon, 29 Jul 2024 15:44:46 -0400 Subject: [PATCH] (FORK COMMIT) Make release for 2.0.0-beta3: Requested additional user note --- files/imputationserver-beagle.yaml | 2 +- files/imputationserver-hla.yaml | 2 +- files/imputationserver-pgs.yaml | 2 +- files/minimac4.yaml | 2 +- pom.xml | 2 +- .../imputationserver/steps/imputation/ImputationPipeline.java | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/files/imputationserver-beagle.yaml b/files/imputationserver-beagle.yaml index f12813b7..fc75fc92 100644 --- a/files/imputationserver-beagle.yaml +++ b/files/imputationserver-beagle.yaml @@ -1,7 +1,7 @@ id: imputationserver-beagle name: Genotype Imputation supporting Beagle (Minimac4) description: This is the new Michigan Imputation Server Pipeline using Minimac4. Documentation can be found here.

If your input data is GRCh37/hg19 please ensure chromosomes are encoded without prefix (e.g. 20).
If your input data is GRCh38hg38 please ensure chromosomes are encoded with prefix 'chr' (e.g. chr20). -version: 2.0.0 +version: 2.0.0-beta3 website: https://imputationserver.readthedocs.io category: diff --git a/files/imputationserver-hla.yaml b/files/imputationserver-hla.yaml index 6550a66c..5aa8dfd3 100644 --- a/files/imputationserver-hla.yaml +++ b/files/imputationserver-hla.yaml @@ -1,7 +1,7 @@ id: imputationserver-hla name: Genotype Imputation HLA (Minimac4) description: This is the new Michigan Imputation Server Pipeline using Minimac4. Documentation can be found here.

If your input data is GRCh37/hg19 please ensure chromosomes are encoded without prefix (e.g. 20).
If your input data is GRCh38hg38 please ensure chromosomes are encoded with prefix 'chr' (e.g. chr20). -version: 2.0.0 +version: 2.0.0-beta3 website: https://imputationserver.readthedocs.io category: diff --git a/files/imputationserver-pgs.yaml b/files/imputationserver-pgs.yaml index f8ffa4ff..e9f2941d 100644 --- a/files/imputationserver-pgs.yaml +++ b/files/imputationserver-pgs.yaml @@ -1,7 +1,7 @@ id: imputationserver-pgs name: Polygenic Score Calculation description: "You can upload genotyped data and the application imputes your genotypes, performs ancestry estimation and finally calculates Polygenic Risk Scores.

No dataset at hand? No problem, download our example dataset: 50-samples.zip

" -version: 2.0.0 +version: 2.0.0-beta3 website: https://imputationserver.readthedocs.io/en/latest/pgs/getting-started category: diff --git a/files/minimac4.yaml b/files/minimac4.yaml index 4fd40d54..b15be291 100644 --- a/files/minimac4.yaml +++ b/files/minimac4.yaml @@ -1,7 +1,7 @@ id: imputationserver name: Genotype Imputation (Minimac4) description: This is the new Imputation Server Pipeline using Minimac4. Documentation can be found here.

If your input data is GRCh37/hg19 please ensure chromosomes are encoded without prefix (e.g. 20).
If your input data is GRCh38/hg38 please ensure chromosomes are encoded with prefix 'chr' (e.g. chr20).

There is a limit of three concurrent jobs per person. The TOPMed imputation server is a free resource, and these limits allow us to provide service to a wide audience. We reserve the right to terminate users who violate this policy. -version: 2.0.0-beta2 +version: 2.0.0-beta3 website: https://topmedimpute.readthedocs.io/en/latest/ category: diff --git a/pom.xml b/pom.xml index 44fadb8c..efeca046 100644 --- a/pom.xml +++ b/pom.xml @@ -5,7 +5,7 @@ genepi imputationserver - 2.0.0-beta2 + 2.0.0-beta3 jar University of Michigan Imputation Server http://maven.apache.org diff --git a/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java b/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java index 7cbc94cf..848d6a0c 100644 --- a/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java +++ b/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java @@ -24,7 +24,7 @@ public class ImputationPipeline { - public static final String PIPELINE_VERSION = "michigan-imputationserver-2.0.0-beta2"; + public static final String PIPELINE_VERSION = "michigan-imputationserver-2.0.0-beta3"; public static final String IMPUTATION_VERSION = "minimac-v4.1.6";