docker-compose.yml

version: '3'

services:

  proxy:
    image: jwilder/nginx-proxy
    container_name: nginx-proxy
    ports:
      - "80:80"
      - "443:443"
    volumes:
      - /var/run/docker.sock:/tmp/docker.sock:ro
      - ./nginx-proxy-certs:/etc/nginx/certs:ro
      - ./nginx-proxy.conf:/etc/nginx/conf.d/nginx-proxy.conf:ro
    environment:
      - DNSDOCK_ALIAS=bioatlas.se

  #fs_db:
  #  image: tianon/true
  #  volumes:
  #    - ./mysql-datadir:/var/lib/mysql
  #    - ./initdb:/docker-entrypoint-initdb.d
  #  container_name: fs_volume

  mysqldb:
    image: mysql:5.7
    env_file: ./env/.envcollectory
    container_name: mysqldb
    volumes:
      - db_data_collectory:/var/lib/mysql

  cassandradb:
    image: bioatlas/ala-cassandra:v0.1
    container_name: cassandradb
    volumes:
      - db_data_cassandra:/var/lib/cassandra

  biocacheservice:
    image: bioatlas/ala-biocacheservice:v0.1
    container_name: biocacheservice
    depends_on:
      - cassandradb
      - solr
    links:
      - cassandradb
      - solr
    environment:
      JAVA_OPTS: -Xmx16g -Xms1g -XX:MaxPermSize=256m -Xss256k -Djava.awt.headless=true
    volumes:
      - data_nameindex:/data/lucene/namematching
      - ./config/biocacheservice-config.properties:/data/biocache/config/biocache-config.properties:ro
      - ./config/logger-client.properties:/data/logger-client/config/logger-client.properties:ro

  biocachehub:
    image: bioatlas/ala-biocachehub:v0.1
    container_name: biocachehub
    depends_on:
      - biocacheservice
    environment:
      JAVA_OPTS: -Xmx16g -Xms1g -XX:MaxPermSize=256m -Xss256k -Djava.awt.headless=true
    volumes:
      - ./config/generic-hub-config.properties:/data/ala-hub/config/ala-hub-config.properties

  collectory:
    image: bioatlas/ala-collectory:v0.1
    container_name: collectory
    depends_on:
      - mysqldb
    links:
      - mysqldb
    environment:
      JAVA_OPTS: -Xmx8g -Xms1g -XX:MaxPermSize=256m -Xss256k -Djava.awt.headless=true
    env_file: ./env/.envcollectory
    volumes:
      - ./config/generic-collectory-config.properties:/tmp/ala-collectory-config.properties
    command: /bin/ash -c "envsubst < /tmp/ala-collectory-config.properties > /data/ala-collectory/config/ala-collectory-config.properties && catalina.sh run"

  webserver:
    image: bioatlas/ala-nginx:v0.1
    container_name: webserver
    environment:
      - VIRTUAL_HOST=bioatlas.se,uptime.bioatlas.se
    links:
      - biocachehub
      - biocacheservice
      - collectory
      - ghost
      - uptime
      - loggerservice
      - imageservice
    volumes:
      - ./env/.htpasswd:/etc/nginx/htpasswd

  nameindex:
    image: bioatlas/ala-nameindex:v0.1
    command: /bin/ash
    container_name: nameindex
    volumes:
      - data_nameindex:/data/lucene/namematching

  biocachebackend:
    image: bioatlas/ala-biocachebackend:v0.1
    container_name: biocachebackend
    links:
      - biocachehub
      - biocacheservice
      - collectory
      - cassandradb
      - solr
    command: /bin/ash
    environment:
      biocache_opts: -Xmx16g -Xms1g
    volumes:
      - data_nameindex:/data/lucene/namematching
      - data_biocachebackend:/data
      - ./config/blacklistMediaUrls.txt:/data/biocache/config/blacklistMediaUrls.txt
      - ./config/biocachebackend-config.properties:/data/biocache/config/biocache-config.properties:ro

  solr:
    image: bioatlas/ala-solrindex:v0.1
    container_name: solr
    environment:
      SOLR_HEAP: 64g
    volumes:
      - data_solr:/data/solr

  mongo:
    image: bioatlas/ala-mongo:v0.1
    #image: mvertes/alpine-mongo
    container_name: mongo
    volumes:
      - db_data_mongo:/data/db

  uptime:
    image: usman/docker-uptime
    container_name: uptime
    links:
      - mongo:mongodb
    volumes:
      - ./uptime/default.yaml:/tmp/uptime/config/default.yaml

  ghost:
    image: zzrot/alpine-ghost
    container_name: ghost
    environment:
      PROD_DOMAIN: https://bioatlas.se
      NODE_ENV: production
    volumes:
      - ./ghost/content:/var/lib/ghost

  ghost-backup:
    image: bennetimo/ghost-backup
    container_name: ghost-backup
    volumes:
      - ./ghost/backups:/backups

  dnsdock:
    image: aacebedo/dnsdock:v1.15.0-amd64
    container_name: dnsserver
    ports:
      - 172.17.0.1:53:53/udp
    volumes:
      - /var/run/docker.sock:/var/run/docker.sock

  #dnsmasq:
  #  image: andyshinn/dnsmasq:2.76
  #  command: --log-facility=-
  #  container_name: dnsmasq
  #  cap_add:
  #    - NET_ADMIN
  #  ports:
  #    - 172.17.0.1:53:53/tcp
  #    - 172.17.0.1:53:53/udp

  loggerservice:
    image: bioatlas/ala-loggerservice:v0.1
    container_name: loggerservice
    depends_on:
      - mysqldblogger
    links:
      - mysqldblogger
    environment:
      JAVA_OPTS: -Xmx2g -Xms1g -XX:MaxPermSize=256m -Xss256k -Djava.awt.headless=true
    env_file: ./env/.envlogger
    volumes:
      - ./config/logger-config.properties:/tmp/logger-config.properties
    command: /bin/ash -c "envsubst < /tmp/logger-config.properties > /data/logger/config/logger-config.properties && catalina.sh run"

  mysqldblogger:
    image: mysql:5.7
    env_file: ./env/.envlogger
    container_name: mysqldblogger
    volumes:
      - ./loggerservice/db:/docker-entrypoint-initdb.d
      - db_data_loggerservice:/var/lib/mysql

  imageservice:
    image: bioatlas/ala-imageservice:v0.1
    container_name: imageservice
    depends_on:
      - psqldbimage
    links:
      - psqldbimage
    environment:
      JAVA_OPTS: -Xmx8g -Xms1g -XX:MaxPermSize=256m -Xss256k -Djava.awt.headless=true
    env_file: ./env/.envimage
    volumes:
      - ./config/images-config.properties:/tmp/images-config.properties
      - data_images:/data/images/store
      - data_images_elasticsearch:/data/images/elasticsearch
    command: /bin/ash -c "envsubst < /tmp/images-config.properties > /data/images/config/images-config.properties && catalina.sh run"

  static:
    image: nginx:alpine
    volumes:
      - ./static:/usr/share/nginx/html
    container_name: static

  imagestore:
    image: bioatlas/ala-imagestore:v0.1
    volumes:
      - data_images:/data/images/store
    container_name: imagestore

  psqldbimage:
    image: postgres:alpine
    env_file: ./env/.envimage
    container_name: psqldbimage
    volumes:
      - db_data_imageservice:/var/lib/postgresql/data

  apiservice:
    image: bioatlas/ala-api:v0.1
    container_name: apiservice
    depends_on:
      - mysqldbapi
    links:
      - mysqldbapi
    environment:
      JAVA_OPTS: -Xmx2g -Xms1g -XX:MaxPermSize=256m -Xss256k -Djava.awt.headless=true
    env_file: ./env/.envapi
    volumes:
      - ./config/webapi-config.properties:/tmp/webapi-config.properties
    command: /bin/ash -c "envsubst < /tmp/webapi-config.properties > /data/webapi/config/webapi-config.properties && catalina.sh run"

  mysqldbapi:
    image: mysql:5.7
    env_file: ./env/.envapi
    container_name: mysqldbapi
    volumes:
      - db_data_apiservice:/var/lib/mysql

  dashboard:
    image: bioatlas/ala-dashboard:v0.1
    container_name: dashboard
    environment:
      JAVA_OPTS: -Xmx4g -Xms1g -XX:MaxPermSize=256m -Xss256k -Djava.awt.headless=true
    volumes:
      - ./config/dashboard-config.properties:/data/dashboard/config/dashboard-config.properties
      - ./dashboard/data.json:/data/dashboard/data.json

  mirroreum:
    image: raquamaps/mirroreum:latest
    container_name: mirroreum
    env_file: ./env/.envmirroreum
    environment:
      - VIRTUAL_HOST=mirroreum.bioatlas.se
      - VIRTUAL_PORT=8787
    volumes:
      - data_mirroreum:/home/rstudio

  shiny:
    image: raquamaps/shiny:v0.1.6
    container_name: shiny
    environment:
      - VIRTUAL_HOST=birdringing.bioatlas.se
      - VIRTUAL_PORT=3838

  portainer:
    image: portainer/portainer
    volumes:
      - /var/run/docker.sock:/var/run/docker.sock
      - data_portainer:/data
#    environment:
#      - VIRTUAL_HOST=monitor.bioatlas.se
#      - VIRTUAL_PORT=9000
    ports:
      - 9000:9000

  mysqldbwordpress:
    image: mysql:5.7
    container_name: mysqldbwordpress
    env_file: ./env/.envwordpress
    volumes:
      - db_data_wordpress:/var/lib/mysql

  wordpress:
    image: wordpress:4.9.5-apache
    container_name: wordpress
    ports:
      - 8080:80
    env_file: ./env/.envwordpress
    volumes:
      - ./wordpress/themes/atlas/bioatlas-wordpress-theme-master:/var/www/html/wp-content/themes/atlas
      - ./wordpress/wp-config-sample.php:/usr/src/wordpress/wp-config-sample.php:ro

volumes:
  db_data_collectory:
  db_data_cassandra:
  db_data_mongo:
  db_data_loggerservice:
  db_data_imageservice:
  db_data_apiservice:
  data_nameindex:
  data_images:
  data_biocachebackend:
  data_mirroreum:
  data_solr:
  data_images_elasticsearch:
  data_portainer:
  db_data_wordpress: