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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method("[[",FISHprobe)
S3method("[[<-",FISHprobe)
S3method(length,FISHprobe)
export(AddGeneExpressions)
export(AddReadout)
export(AssignReadout)
export(BLASTProbes)
export(Calc2ndStruct)
export(CalcConsecutive)
export(CalcDuplex)
export(CalcExon)
export(CalcGC)
export(CalcJunction)
export(CalcRepMask)
export(CalcTm)
export(ConcatReadout)
export(CreateBLASTObject)
export(CreateFASTAFile)
export(CreateProbeObject)
export(DiffFeature)
export(DiffJunction)
export(DiffProbes)
export(ExtractProbes)
export(FilterBLAST)
export(FilterBarplot)
export(FilterHeatmap)
export(FilterPairs)
export(FilterProbes)
export(GenerateFinalProbes)
export(GenerateProbeTracks)
export(GenerateProbes)
export(GenerateReadout)
export(GetSequence)
export(GetSlotData)
export(GridSelect)
export(ListFeatures)
export(ListTissues)
export(MergeProbes)
export(OffTargetExpr)
export(OrderPairs)
export(OrderProbe)
export(PairSelect)
export(PlotFeatures)
export(PlotTissueExpr)
export(PrintFilter)
export(ResetProbes)
export(SaveProbes)
export(SelectProbes)
export(SelectTranscript)
export(SetSlotData)
export(SplitProbes)
export(StashProbes)
export(SubsetProbes)
export(TissueExpr)
export(Transcripts)
exportClasses(DiffProbe)
exportClasses(FISHprobe)
import(biomaRt)
import(cowplot)
import(future)
import(future.apply)
import(ggplot2)
import(intervals)
import(rBLAST)
import(stringr)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,masks)
importFrom(D3GB,genome_addSequence)
importFrom(D3GB,genome_addTrack)
importFrom(D3GB,genomebrowser)
importFrom(D3GB,getAssemblyFromFasta)
importFrom(Hmisc,capitalize)
importFrom(IRanges,active)
importFrom(LncFinder,run_RNAfold)
importFrom(Ringo,plotBM)
importFrom(TmCalculator,Tm_NN)
importFrom(TmCalculator,chem_correction)
importFrom(biomaRt,getBM)
importFrom(biomaRt,getSequence)
importFrom(intervals,Intervals)
importFrom(intervals,interval_intersection)
importFrom(pbapply,pblapply)
importFrom(pbmcapply,pbmclapply)
importFrom(rBLAST,blast)
importFrom(rBLAST,makeblastdb)
importFrom(reshape2,melt)
importFrom(seqinr,write.fasta)
importFrom(stringr,str_count)
importFrom(stringr,str_length)