tests.yml

name: Tests

on:
  workflow_call:

  workflow_dispatch:

  schedule:
    - cron: '0 0 * * *'

jobs:
  unit_tests:
    name: Unit Tests
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
            python-version: 3.12
      - name: Install Dependencies
        run: pip install .[test] setuptools
    
      - name: Run tests
        env:
            SUNBEAM_VER: "999"
        run: pytest ./tests/unit/

  lint:
    name: Lint Codebase
    runs-on: ubuntu-latest

    steps:
      - name: Checkout Code
        uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
            python-version: 3.12
      - name: Install Dependencies
        run: pip install black snakefmt

      - name: Lint Code Base
        run: |
            black --check workflow/scripts/ src/sunbeamlib/ tests/
            snakefmt --check workflow/rules/ workflow/Snakefile

  e2e_tests:
    name: E2E Tests
    runs-on: ubuntu-latest
    needs:
        - unit_tests
        - lint

    steps:
      - uses: actions/checkout@v4

      - uses: s-weigand/setup-conda@v1.2.1
    
      - name: Install Sunbeam
        shell: bash
        run: |
            cd $GITHUB_WORKSPACE
            bash install.sh -e sunbeam -v
    
      - name: Run tests
        run: |
            source activate sunbeam
            pytest ./tests/e2e/