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disheng222 edited this page Sep 2, 2016
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Today’s HPC applications are producing extremely large amounts of data, thus it is necessary to use an efficient compression before storing them to parallel file systems.
We developed the error-bounded HPC data compressor, by proposing a novel HPC data compression method that works very effectively on compressing large-scale HPC data sets.
The key features of SZ are listed below.
- Compression: Input: a data set (or a floating-point array with any dimensions) ; Output: the compressed byte stream Decompression: input: the compressed byte stream ; Output: the original data set with the compression error of each data point being within a pre-specified error bound ∆.
- SZ supports C and Fortran.
- SZ supports two types of error bounds. The users can set either absolute error bound or relative error bound, or a combination of the two bounds (with operator AND or OR). The absolute error bound (denoted δ) is a constant, such as 1E-6. That is, the decompressed data Di′ must be in the range [Di − δ,Di + δ], where Di′ is referred as the decompressed value and Di is the original data value. As for the relative error bound, it is a linear function of the global data value range size, i.e., ∆=λr, where λ(∈(0,1)) and r refer to error bound ratio and range size respectively. For example, given a set of data, the range size r is equal to max (Di )− min (Di ), and the error bound can be written as λ( max (Di )− min (Di )). The relative error bound allows to make sure that the compression error for any data point must be no greater than λ×100 percentage of the global data value range size.
- Detailed usage and examples can be found under the directories doc/user-guide.pdf and example/ respectively, in the package.