From 6cc14980a4c2f690a2f14982c86fc3f33d068660 Mon Sep 17 00:00:00 2001 From: Zheng Ruan Date: Sun, 21 Feb 2021 12:50:46 -0500 Subject: [PATCH] change the default topaz path back --- relion_run_topaz/run_topaz_pick.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/relion_run_topaz/run_topaz_pick.py b/relion_run_topaz/run_topaz_pick.py index c31ef56..130ddfa 100644 --- a/relion_run_topaz/run_topaz_pick.py +++ b/relion_run_topaz/run_topaz_pick.py @@ -27,7 +27,7 @@ """VARIABLES >>>""" print('running ...') parser = argparse.ArgumentParser() -parser.add_argument("-t", "-tpath", "--topaz_path" , type=str, default='/secondary/projects/lu/Zheng/software/conda/anaconda3/envs/topaz/bin/topaz', help = "Topaz path. Input either a direct path to a topaz executable or a directory path where topaz exists.") +parser.add_argument("-t", "-tpath", "--topaz_path" , type=str, default='/usr/local/bin/topaz', help = "Topaz path. Input either a direct path to a topaz executable or a directory path where topaz exists.") parser.add_argument("-i", "--input", "--in_mics", help = "Input micrographs") parser.add_argument("-o", "--output", type=str, help = "Output folder (full path)") parser.add_argument("-d", "--device", type=int, default=0, help = "GPU/CPU devide. Non-negative numbers correspond to GPU IDs. Negative numbers correspond to CPU processing.")