HiCCUPS: GPUs are not installed so HiCCUPs cannot be run

[olechnwin]

I created a singularity image from the docker image. When I ran juicer.sh in SLURM, I got this error
"HiCCUPS: GPUs are not installed so HiCCUPs cannot be run "

Does that mean CUDA and NVIDIA GPU are not installed in the docker image?

Thanks for your help.

[nchernia]

They are not, indeed, since that is a hardware specific requirement. There’s another NVIDIA specific Docker but we normally advise running the Google colab version. Go to the 3D genomics forum to learn more (search for hiccups and colab) aidenlab.org/forum.html

On Wed, Jul 21, 2021 at 12:20 PM olechnwin ***@***.***> wrote: I created a singularity image from the docker image. When I ran juicer.sh in SLURM, I got this error "HiCCUPS: GPUs are not installed so HiCCUPs cannot be run " Does that mean CUDA and NVIDIA GPU are not installed in the docker image? Thanks for your help. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#3>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAK2EWYMZI6AGJWN2WWT5QTTY3XTXANCNFSM5AYJLNXA> .

-- Neva Cherniavsky Durand, Ph.D. | she, her, hers Assistant Professor | Molecular and Human Genetics Aiden Lab | Baylor College of Medicine www.aidenlab.org

[olechnwin]

@nchernia,
Thank you for your reply. Will try to search in the forum.