From a81be2133c2683fb78292ae35175c27b77332eb2 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 10 Feb 2025 21:24:31 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
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updates:
- [github.com/pre-commit/mirrors-mypy: v1.14.1 → v1.15.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.14.1...v1.15.0)
- [github.com/psf/black: 24.10.0 → 25.1.0](https://github.com/psf/black/compare/24.10.0...25.1.0)
- [github.com/PyCQA/isort: 5.13.2 → 6.0.0](https://github.com/PyCQA/isort/compare/5.13.2...6.0.0)
- [github.com/astral-sh/ruff-pre-commit: v0.9.3 → v0.9.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.3...v0.9.6)
---
 .pre-commit-config.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 6c747ba1..e4bb9835 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -7,13 +7,13 @@ default_stages:
 minimum_pre_commit_version: 3.0.0
 repos:
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.14.1
+    rev: v1.15.0
     hooks:
       - id: mypy
         additional_dependencies: [numpy>=1.25.0]
         files: ^src
   - repo: https://github.com/psf/black
-    rev: 24.10.0
+    rev: 25.1.0
     hooks:
       - id: black
         additional_dependencies: [toml]
@@ -23,7 +23,7 @@ repos:
       - id: prettier
         language_version: system
   - repo: https://github.com/PyCQA/isort
-    rev: 5.13.2
+    rev: 6.0.0
     hooks:
       - id: isort
         additional_dependencies: [toml]
@@ -63,7 +63,7 @@ repos:
       - id: doc8
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.9.3
+    rev: v0.9.6
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]

From 84e4f495d05fd291ddd8e7f2ad5ce95a9e989f37 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 10 Feb 2025 21:25:16 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 src/moscot/base/solver.py     | 2 +-
 src/moscot/plotting/_utils.py | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/moscot/base/solver.py b/src/moscot/base/solver.py
index b2068007..bd4e736f 100644
--- a/src/moscot/base/solver.py
+++ b/src/moscot/base/solver.py
@@ -41,7 +41,7 @@ def _get_array_data(
         **kwargs: Any,
     ) -> TaggedArrayData:
         def to_tuple(
-            data: Optional[Union[ArrayLike, Tuple[ArrayLike, ArrayLike]]]
+            data: Optional[Union[ArrayLike, Tuple[ArrayLike, ArrayLike]]],
         ) -> Tuple[Optional[ArrayLike], Optional[ArrayLike]]:
             if not isinstance(data, tuple):
                 return data, None
diff --git a/src/moscot/plotting/_utils.py b/src/moscot/plotting/_utils.py
index d21c3e91..32f4617c 100644
--- a/src/moscot/plotting/_utils.py
+++ b/src/moscot/plotting/_utils.py
@@ -358,7 +358,7 @@ def _contrasting_color(r: int, g: int, b: int) -> str:
 
 
 def _input_to_adatas(
-    inp: Union[AnnData, Tuple[AnnData, AnnData], "CompoundProblem"]  # type: ignore[type-arg]
+    inp: Union[AnnData, Tuple[AnnData, AnnData], "CompoundProblem"],  # type: ignore[type-arg]
 ) -> Tuple[AnnData, AnnData]:
     from moscot.base.problems import CompoundProblem