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blocked wget requests #17

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nick-youngblut opened this issue Feb 10, 2025 · 2 comments
Open

blocked wget requests #17

nick-youngblut opened this issue Feb 10, 2025 · 2 comments

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@nick-youngblut
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From the model_inference notebook:

wget https://pklab.med.harvard.edu/felix/data/merlin_cxg_2023_05_15_sf-log1p_minimal.tar.gz
wget https://pklab.med.harvard.edu/felix/data/scTab-checkpoints.tar.gz

Both files simply contain:

<html>
<head>
<META NAME="robots" CONTENT="noindex,nofollow">
<script src="/_Incapsula_Resource?SWJIYLWA=5074a744e2e3d891814e9a2dace20bd4,719d34d31c8e3a6e6fffd425f7e032f3">
</script>
<body>
</body></html>

https://pklab.med.harvard.edu is blocking wget requests.
@felix0097
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Member

Hi @nick-youngblut,

somehow the server doesn't seem to process requests sent by wget properly anymore. In the meantime, you can download the files from the browser (this still works, I've tested it with Google Chrome). If you're only interested in the scTab checkpoints, you can switch out the scTab-checkpoints.tar.gz file for the cap-sctab-service-ckpts.tar.gz file, this is a lot smaller as it only contains the scTab checkpoints and not the checkpoints of the other models (e.g. linear model or XGBoost model). You can then just scp the data from your laptop to your local cluster. This should be fine, it's less than 2GB of data.

Does this alternative work for you?

Best,
Felix

@nick-youngblut
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I ended up downloading from the browser, which is a bit of pain for working on a remote server (download + data transfer), but not too much hassle, given the size of the files.
Thanks for your help!

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@nick-youngblut @felix0097