diff --git a/R/bezier.R b/R/bezier.R index 81dcd405..bf87b72b 100644 --- a/R/bezier.R +++ b/R/bezier.R @@ -96,6 +96,28 @@ NULL #' @usage NULL #' @export StatBezier <- ggproto('StatBezier', Stat, + # .Deprecated - remove after next release + compute_layer = function(self, data, params, layout) { + if (is.null(data)) return(data) + data <- remove_missing(data, params$na.rm, + c(self$required_aes, self$non_missing_aes), + snake_class(self), + finite = TRUE + ) + + # Trim off extra parameters + params <- params[intersect(names(params), self$parameters())] + + args <- c(list(data = quote(data), scales = quote(scales)), params) + dapply(data, "PANEL", function(data) { + scales <- layout$get_scales(data$PANEL[1]) + tryCatch(do.call(self$compute_panel, args), error = function(e) { + warning("Computation failed in `", snake_class(self), "()`:\n", + e$message, call. = FALSE) + new_data_frame() + }) + }) + }, compute_panel = function(data, scales, n = 100) { if (is.null(data)) return(data) nControls <- table(data$group) @@ -218,6 +240,28 @@ geom_bezier2 <- function(mapping = NULL, data = NULL, stat = 'bezier2', #' @usage NULL #' @export StatBezier0 <- ggproto('StatBezier0', Stat, + # .Deprecated - remove after next release + compute_layer = function(self, data, params, layout) { + if (is.null(data)) return(data) + data <- remove_missing(data, params$na.rm, + c(self$required_aes, self$non_missing_aes), + snake_class(self), + finite = TRUE + ) + + # Trim off extra parameters + params <- params[intersect(names(params), self$parameters())] + + args <- c(list(data = quote(data), scales = quote(scales)), params) + dapply(data, "PANEL", function(data) { + scales <- layout$get_scales(data$PANEL[1]) + tryCatch(do.call(self$compute_panel, args), error = function(e) { + warning("Computation failed in `", snake_class(self), "()`:\n", + e$message, call. = FALSE) + new_data_frame() + }) + }) + }, compute_panel = function(data, scales) { if (is.null(data)) return(data) data <- data[order(data$group), ] diff --git a/R/link.R b/R/link.R index 0da4ffcf..9c56b5df 100644 --- a/R/link.R +++ b/R/link.R @@ -83,6 +83,28 @@ NULL #' @usage NULL #' @export StatLink <- ggproto('StatLink', Stat, + # .Deprecated - remove after next release + compute_layer = function(self, data, params, layout) { + if (is.null(data)) return(data) + data <- remove_missing(data, params$na.rm, + c(self$required_aes, self$non_missing_aes), + snake_class(self), + finite = TRUE + ) + + # Trim off extra parameters + params <- params[intersect(names(params), self$parameters())] + + args <- c(list(data = quote(data), scales = quote(scales)), params) + dapply(data, "PANEL", function(data) { + scales <- layout$get_scales(data$PANEL[1]) + tryCatch(do.call(self$compute_panel, args), error = function(e) { + warning("Computation failed in `", snake_class(self), "()`:\n", + e$message, call. = FALSE) + new_data_frame() + }) + }) + }, compute_panel = function(data, scales, n = 100) { extraCols <- !names(data) %in% c('x', 'y', 'xend', 'yend', 'group', 'PANEL') data$group <- make.unique(as.character(data$group)) diff --git a/README.Rmd b/README.Rmd index 4eb3c2b7..299c6111 100644 --- a/README.Rmd +++ b/README.Rmd @@ -48,8 +48,7 @@ devtools::install_github("thomasp85/ggforce") ## Features `ggforce` is by design a collection of features with the only commonality being their tie to the `ggplot2` API. Because of this an overview of all features -would get too long for a README. The package does contain a -[vignette](https://CRAN.R-project.org/package=ggforce/vignettes/Visual_Guide.html) +would get too long for a README. The package has a [website](https://ggforce.data-imaginist.com) where every feature is described and justified with examples and plots. There should be a plot in the README of a visualization package though, so without further ado: diff --git a/README.md b/README.md index 716af2fc..1418d77b 100644 --- a/README.md +++ b/README.md @@ -43,11 +43,10 @@ devtools::install_github("thomasp85/ggforce") `ggforce` is by design a collection of features with the only commonality being their tie to the `ggplot2` API. Because of this an overview of all features would get too long for a README. The package -does contain a -[vignette](https://CRAN.R-project.org/package=ggforce/vignettes/Visual_Guide.html) -where every feature is described and justified with examples and plots. -There should be a plot in the README of a visualization package though, -so without further ado: +has a [website](https://ggforce.data-imaginist.com) where every feature +is described and justified with examples and plots. There should be a +plot in the README of a visualization package though, so without further +ado: ``` r library(ggforce) diff --git a/cran-comments.md b/cran-comments.md index c203572e..4b31c307 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,3 +1,6 @@ +Fix for reverse dependencies that showed in latest submission. All reverse +dependencies have been checked again and show no problems + ## Test environments * local OS X install, R 3.6.0 * ubuntu 14.04 (on travis-ci), R 3.6.0 diff --git a/revdep/README.md b/revdep/README.md index 9f790b37..ab828102 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -10,16 +10,15 @@ |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | -|date |2019-08-09 | +|date |2019-08-20 | # Dependencies -|package |old |new |Δ | -|:-------|:-----|:----------|:--| -|ggforce |0.2.2 |0.2.2.9000 |* | -|digest |NA |0.6.20 |* | -|pillar |NA |1.4.2 |* | -|Rcpp |NA |1.0.2 |* | +|package |old |new |Δ | +|:-------|:-----|:------|:--| +|ggforce |0.3.0 |0.3.1 |* | +|digest |NA |0.6.20 |* | +|pillar |NA |1.4.2 |* | # Revdeps diff --git a/revdep/failures.md b/revdep/failures.md index bf69c92a..30d1ea09 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -30,7 +30,7 @@ Run `revdep_details(,"circumplex")` for more info ** package ‘circumplex’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/circumplex/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/circumplex/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/circumplex/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang: error: unsupported option '-fopenmp' make: *** [RcppExports.o] Error 1 ERROR: compilation failed for package ‘circumplex’ @@ -126,36 +126,36 @@ all: $(SHLIB) --------[end src/Makevars]-------- ** libs -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c call_dvode.c -o call_dvode.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c dop853.c -o dop853.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c tran.c -o tran.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c omegaChol.c -o omegaChol.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c init.c -o init.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c par_solve.c -o par_solve.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c cfode.c -o cfode.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c common.c -o common.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c corfailure.c -o corfailure.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c correction.c -o correction.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c daxpy.c -o daxpy.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c ddot.c -o ddot.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c dgefa.c -o dgefa.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c dgesl.c -o dgesl.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c dscal.c -o dscal.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c fnorm.c -o fnorm.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c idamax.c -o idamax.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c intdy.c -o intdy.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c lsoda.c -o lsoda.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c methodswitch.c -o methodswitch.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c orderswitch.c -o orderswitch.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c prja.c -o prja.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c scaleh.c -o scaleh.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c solsy.c -o solsy.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c stoda.c -o stoda.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c vmnorm.c -o vmnorm.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c strdup_printf.c -o strdup_printf.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c rprintf.c -o rprintf.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c lincmt.c -o lincmt.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c box.c -o box.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c call_dvode.c -o call_dvode.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c dop853.c -o dop853.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c tran.c -o tran.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c omegaChol.c -o omegaChol.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c init.c -o init.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c par_solve.c -o par_solve.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c cfode.c -o cfode.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c common.c -o common.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c corfailure.c -o corfailure.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c correction.c -o correction.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c daxpy.c -o daxpy.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c ddot.c -o ddot.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c dgefa.c -o dgefa.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c dgesl.c -o dgesl.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c dscal.c -o dscal.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c fnorm.c -o fnorm.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c idamax.c -o idamax.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c intdy.c -o intdy.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c lsoda.c -o lsoda.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c methodswitch.c -o methodswitch.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c orderswitch.c -o orderswitch.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c prja.c -o prja.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c scaleh.c -o scaleh.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c solsy.c -o solsy.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c stoda.c -o stoda.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c vmnorm.c -o vmnorm.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c strdup_printf.c -o strdup_printf.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c rprintf.c -o rprintf.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c lincmt.c -o lincmt.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_isRxODE_ -fPIC -Wall -g -O2 -c box.c -o box.o gfortran -fPIC -Wall -g -O2 -c dlsoda.f -o dlsoda.o dlsoda.f:705:0: @@ -195,13 +195,13 @@ opkda2.f:650:0: INTEGER FUNCTION IXSAV (IPAR, IVALUE, ISET) Warning: '__result_ixsav' may be used uninitialized in this function [-Wmaybe-uninitialized] -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c WinDrive.cpp -o WinDrive.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rxInv.cpp -o rxInv.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rxData.cpp -o rxData.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c etTran.cpp -o etTran.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c et.cpp -o et.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/ggforce/new/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rxStack.cpp -o rxStack.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c WinDrive.cpp -o WinDrive.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rxInv.cpp -o rxInv.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rxData.cpp -o rxData.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c etTran.cpp -o etTran.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c et.cpp -o et.o +clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_isRxODE_ -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/dparser/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/ggforce/revdep/library.noindex/RxODE/PreciseSums/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rxStack.cpp -o rxStack.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RxODE.so call_dvode.o dop853.o tran.o omegaChol.o init.o par_solve.o cfode.o common.o corfailure.o correction.o daxpy.o ddot.o dgefa.o dgesl.o dscal.o fnorm.o idamax.o intdy.o lsoda.o methodswitch.o orderswitch.o prja.o scaleh.o solsy.o stoda.o vmnorm.o strdup_printf.o rprintf.o lincmt.o box.o dlsoda.o opkda2.o RcppExports.o WinDrive.o rxInv.o rxData.o etTran.o et.o rxStack.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' ld: warning: directory not found for option '-L/usr/local/gfortran/lib' @@ -356,7 +356,7 @@ ERROR: compilation failed for package ‘RxODE’ * URL: https://github.com/r-quantities/units/ * BugReports: https://github.com/r-quantities/units/issues/ * Date/Publication: 2019-05-03 21:50:03 UTC -* Number of recursive dependencies: 60 +* Number of recursive dependencies: 62 Run `revdep_details(,"units")` for more info