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Missing quality scores QUAL #144

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schmart95 opened this issue Apr 9, 2024 · 1 comment
Open

Missing quality scores QUAL #144

schmart95 opened this issue Apr 9, 2024 · 1 comment

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@schmart95
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Hi, thanks for this useful tool.
I do not get any quality scores (QUAL). Is that expected? Do I have to add some option to the command?
@Meltpinkg
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Hello, @schmart95

The quality scores are calculated when cuteSV detects the SV genotypes. So the --genotype parameter should be added to enable the calculation of quality scores.
Hope it will help!

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@Meltpinkg @schmart95