diff --git a/.dockstore.yml b/.dockstore.yml index 360edbab..2d4b7b95 100644 --- a/.dockstore.yml +++ b/.dockstore.yml @@ -78,3 +78,4 @@ workflows: tags: - umccrise-pipeline/2.3.1--1 - umccrise-pipeline/2.3.1--1__20240627054449 + - umccrise-pipeline/2.3.1--1__20240627233816 diff --git a/.github/releases/umccrise-pipeline__2.3.1--1__20240627233816/workflow.svg b/.github/releases/umccrise-pipeline__2.3.1--1__20240627233816/workflow.svg new file mode 100644 index 00000000..c8a042e9 --- /dev/null +++ b/.github/releases/umccrise-pipeline__2.3.1--1__20240627233816/workflow.svg @@ -0,0 +1,185 @@ + + + + + + +G + + +cluster_inputs + +Workflow Inputs + + +cluster_outputs + +Workflow Outputs + + + +debug + +debug + + + +run_umccrise_step + +run_umccrise_step + + + +debug->run_umccrise_step + + + + + +dragen_germline_directory + +dragen_germline_directory + + + +dragen_germline_directory->run_umccrise_step + + + + + +dragen_normal_id + +dragen_normal_id + + + +dragen_normal_id->run_umccrise_step + + + + + +dragen_somatic_directory + +dragen_somatic_directory + + + +dragen_somatic_directory->run_umccrise_step + + + + + +dragen_tumor_id + +dragen_tumor_id + + + +dragen_tumor_id->run_umccrise_step + + + + + +dry_run + +dry_run + + + +dry_run->run_umccrise_step + + + + + +genomes_tar + +genomes_tar + + + +genomes_tar->run_umccrise_step + + + + + +include_stage + +include_stage + + + +include_stage->run_umccrise_step + + + + + +output_directory_name + +output_directory_name + + + +output_directory_name->run_umccrise_step + + + + + +skip_stage + +skip_stage + + + +skip_stage->run_umccrise_step + + + + + +subject_identifier + +subject_identifier + + + +subject_identifier->run_umccrise_step + + + + + +threads + +threads + + + +threads->run_umccrise_step + + + + + +output_directory + +output_directory + + + +run_umccrise_step->output_directory + + + + + diff --git a/config/icav2.yaml b/config/icav2.yaml index 7a2d84ce..10f80254 100644 --- a/config/icav2.yaml +++ b/config/icav2.yaml @@ -2129,3 +2129,44 @@ bundles: - development - staging - production + - bundle_name: umccrise_prod__2_3_1__20240627233816 + bundle_description: 'This bundle has been generated by the release of workflows/umccrise-pipeline/2.3.1--1/umccrise-pipeline__2.3.1--1.cwl. + The pipeline can be found at https://github.com/umccr/cwl-ica/releases/tag/umccrise-pipeline/2.3.1--1__20240627233816. ' + bundle_version: v9_r3__20240627233816 + bundle_version_description: Bundle version description is currently redundant + while we cannot append versions to bundles. Regardless - the bunch version is + v9_r3 + bundle_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb + bundle_region_city_name: Sydney + tenant_name: umccr-prod + pipeline_path: workflows/umccrise-pipeline/2.3.1--1/umccrise-pipeline__2.3.1--1.cwl + pipeline_name: umccrise-pipeline + pipeline_version: 2.3.1--1 + pipeline_release_url: + https://github.com/umccr/cwl-ica/releases/tag/umccrise-pipeline/2.3.1--1__20240627233816 + pipeline_commit_id: umccrise-pipeline/2.3.1--1__20240627233816 + pipeline_checksum: f7897225b40d67a91ef65b765ae2cff8 + pipeline_project_id: 5844391a-69db-4b52-86b5-6a0d55c2386f + bundle_creation_time: '2024-06-27T23:40:13Z' + bundle_release_status: draft + bunch_name: umccrise_prod__2_3_1 + bunch_version: v9_r3 + bunch_datasets: + - dataset_name: umccrise_202303 + dataset_creation_time: '2024-06-23T10:43:30Z' + dataset_id_hash: d240e2f94f1859bd67da74fb9d7b90d2 + bundle_id: 4b06a809-6d05-4cb4-b17d-a9641de834a8 + bundle_data_ids: + - fil.6ebd31e5634a4466053f08dc8578d1bc + bundle_pipeline_id: e51d4372-4567-4ff8-ac72-f7d754a75af7 + bundle_url: + https://ica.illumina.com/ica/bundles/4b06a809-6d05-4cb4-b17d-a9641de834a8/bundleDetails + bundle_categories: + - wgs + - variant-filtering + - tertiary-analysis + - production + projects: + - development + - staging + - production