Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

feat: Develop Production Container Optimized for HPC #59

Open
5 of 6 tasks
atambay37 opened this issue Jan 23, 2025 · 0 comments
Open
5 of 6 tasks

feat: Develop Production Container Optimized for HPC #59

atambay37 opened this issue Jan 23, 2025 · 0 comments
Assignees
@IshikaKhandelwal
Labels
5d 5 Days estimate of work enhancement New feature or request HPC Milestone 2 Building Docker Containers for Development and Production tooling

Comments

@atambay37
Copy link
Member

atambay37 commented Jan 23, 2025 •
edited by IshikaKhandelwal
Loading

Build a lightweight, performance-focused container optimized for running the pipeline in HPC environments.

Tasks:

  • Use r-base as the base image or evaluate alternatives for better performance.
  • Install only the libraries required to run the pipeline, avoiding development dependencies.
  • Test the container for parallel execution of workflow tasks.
  • Ensure compatibility with persistent volume mounting for shared data access.
  • Test with apptainer environment (e.g. Hyak)
  • Ben/Andreas testing of the container on their environment
@atambay37 atambay37 added 3d 3 Days estimate of work Milestone 2 Building Docker Containers for Development and Production 5d 5 Days estimate of work enhancement New feature or request tooling HPC and removed 3d 3 Days estimate of work labels Jan 23, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@IshikaKhandelwal IshikaKhandelwal

Labels
5d 5 Days estimate of work enhancement New feature or request HPC Milestone 2 Building Docker Containers for Development and Production tooling
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@atambay37 @IshikaKhandelwal