Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Refactor gene information interfaces #339

Open
6 tasks
holtgrewe opened this issue Nov 27, 2023 · 0 comments
Open
6 tasks

Refactor gene information interfaces #339

holtgrewe opened this issue Nov 27, 2023 · 0 comments
Labels
enhancement New feature or request

Comments

@holtgrewe
Copy link
Contributor

Is your feature request related to a problem? Please describe.
The current gene information retrieval interfaces are a bit problematic. See below.

Describe the solution you'd like
Adjust them as follows:

  • do not return maps from HGNC ID to information but rather lists of information objects with HGNC ID being a member
  • retrieve "slimmer" version by default
  • allow to switch on / off certain sections so not the full information is retrieved
  • store "id only" information in an additional column family for faster iteration
  • make all data structures on the interfaces to external protocol buffers
  • implement pagination for retrieving genes

Describe alternatives you've considered
N/A

Additional context
N/A

@holtgrewe holtgrewe added the enhancement New feature or request label Nov 27, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
Status: Backlog
Development

No branches or pull requests

1 participant