README.Rmd

---
output: github_document
---

<!-- README.md is generated from README.Rmd. Please edit that file -->

```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/",
  out.width="100%"
)
```

# qraLm <a href='https://vcadavez.github.io/qraLm/docs/'><img src='man/figures/hex-qraLm.png' align="right" height="80" /></a>

A R package to develop quantitative risk assessment for *L. monocytogenes* in Frozen Vegetables, Diced RTE Cantaloupe and Cold-smoked RTE Fish.

- Version developed under the scope of the [Joint FAO/WHO](https://www.who.int/publications/m/item/jemra-of-listeria-monocytogenes-in-foods)
 Expert meeting on microbiological risk assessment of Listeria monocytogenes in foods.


## Installation

- You can install `qraLm` from [GitHub: https://github.com/vcadavez/qraLm](https://github.com/vcadavez/qraLm)
using the `devtools` package, with the R code below.

- You must first install the `doseresponsemodels` package from [github: https://github.com/vcadavez/doseresponsemodels](https://github.com/vcadavez/doseresponsemodels), which implements the dose-response models for Listeria monocytogenes.

- For Windows users it is recommended to install
[Rtools: https://cran.r-project.org/bin/windows/Rtools/](https://cran.r-project.org/bin/windows/Rtools/) before.

- The packages on which `qraLm` depends are: `Hmisc`, `extraDistr`, `mc2d`, `matrixStats`, `DT`, `dplyr`,
         `ggplot2`, `plotly`, `doseresponsemodels` and `BH`; you should install them before installing `qraLm`.


```{r, eval=FALSE}

if (!require("devtools")) install.packages("devtools")
devtools::install_github("vcadavez/doseresponsemodels")
devtools::install_github("vcadavez/qraLm")
```

## Using qraLm

You can find the vignettes at the `qraLm` website:  [https://vcadavez.github.io/qraLm/](https://vcadavez.github.io/qraLm/).

## Reporting bugs

You can report bugs at: [https://github.com/vcadavez/qraLm/issues](https://github.com/vcadavez/qraLm/issues).