You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Right now the test script only uses NA12878. It would be good to also use HG002 as a test sample.
The challenge here is generating the haplotype graphs needed to simulate the reads, since this sample isn't in the 1kg VCFs; we may need to add a second vg construct step just to get the graphs to simulate reads from.
We also would need duplicate mapeval and calleval steps, because each only handles a single sample.
The text was updated successfully, but these errors were encountered:
Right now the test script only uses NA12878. It would be good to also use HG002 as a test sample.
The challenge here is generating the haplotype graphs needed to simulate the reads, since this sample isn't in the 1kg VCFs; we may need to add a second vg construct step just to get the graphs to simulate reads from.
We also would need duplicate mapeval and calleval steps, because each only handles a single sample.
The text was updated successfully, but these errors were encountered: