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Do both HG002 and NA12878 (aka HG001) #6

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adamnovak opened this issue May 17, 2018 · 0 comments
Open

Do both HG002 and NA12878 (aka HG001) #6

adamnovak opened this issue May 17, 2018 · 0 comments
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HAMP Haplotype-Aware Mapping Paper ready

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@adamnovak
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Right now the test script only uses NA12878. It would be good to also use HG002 as a test sample.

The challenge here is generating the haplotype graphs needed to simulate the reads, since this sample isn't in the 1kg VCFs; we may need to add a second vg construct step just to get the graphs to simulate reads from.

We also would need duplicate mapeval and calleval steps, because each only handles a single sample.

@adamnovak adamnovak added the HAMP Haplotype-Aware Mapping Paper label May 17, 2018
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