% VCFRANDOM(1) vcfrandom (vcflib) | vcfrandom (VCF statistics) % Erik Garrison and vcflib contributors
vcfrandom
vcfrandom
Generate a random VCF file
Example:
**vcfrandom**
##fileformat=VCFv4.0
##source=**vcfrandom**
##reference=/d2/data/references/build_37/human_reference_v37.fa
##phasing=none
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
##INFO=<ID=AC,Number=1,Type=Integer,Description="Total number of alternate alleles in called genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AF,Number=1,Type=Float,Description="Estimated allele frequency in the range (0,1]">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT bill
one 1 . G G,A 100 . DP=83 GT:DP 0/1:1
one 2 . G G,A 100 . DP=3 GT:DP 0/1:49
one 3 . G C,T 100 . DP=5 GT:DP 0/1:12
one 4 . C G,T 100 . DP=51 GT:DP 0/1:60
one 5 . A T,A 100 . DP=31 GT:DP 0/1:89
one 6 . T T,A 100 . DP=56 GT:DP 0/1:60
one 7 . T A,C 100 . DP=78 GT:DP 0/1:75
one 8 . T G,A 100 . DP=73 GT:DP 0/1:78
one 9 . C C,G 100 . DP=42 GT:DP 0/1:67
Type: statistics
0 : Success
not 0 : Failure
vcflib(1)
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.