Visual maps from anatomy

In which LMP and RL and BW write up how we use the Benson docker container to identify V1/V2/V3 and potentially other Wang atlas maps from T1 data in the Flywheel repository.

Input

T1 anatomy file

Output

A nifti at the same resolution of the T1 anatomy file. The value at each voxel indicates the visual area assignment. For example, the visual area template will consist of values ranging from 0-3, where (1: V1, 2: V2, 3: V3, 0: none of the above).

Visualizing