Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

lack of nuclei number after inference #274

Open
akidway opened this issue Dec 30, 2023 · 2 comments
Open

lack of nuclei number after inference #274

akidway opened this issue Dec 30, 2023 · 2 comments

Comments

@akidway
Copy link

akidway commented Dec 30, 2023

Hi,
I'm using run_infer.py to make inference on tiles.
After run script run_infer.py, I got output json and mat file.
But I found that the number of nuclei is not continues in json and mat file.
There's not 315 after 314.
It seems like fig below.
json
mat

Is that a normal phenomenon?
I wonder if anyone could help me.
Thanks a lot.

I use command as below:
python3 /home/lzh/colon/hovernet/hover_net-master/run_infer.py --gpu=0 --nr_types=6
--type_info_path=/home/lzh/colon/hovernet/hover_net-master/type_info.json --batch_size=16 --model_mode=fast
--model_path=/home/lzh/colon/hovernet/pretrained-model/hovernet_fast_pannuke_type_tf2pytorch.tar --nr_inference_workers=8
--nr_post_proc_workers=8 tile --input_dir=/home/lzh/colon/colon-tiles/id --output_dir=/work/lzh/colon/colon-inference/id
--draw_dot

@Junjunsss
Copy link

请问你解决这个问题了吗

@akidway
Copy link
Author

akidway commented Apr 20, 2024

请问你解决这个问题了吗

没有,我目前已经不用hovernet了

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants