cooler.create._ingest.BadInputError: Found bin ID < 0

[xfcypeng]

Traceback (most recent call last):
File "/media/ps/4T/CPhasing/bin/cphasing", line 7, in
sys.exit(cli())
^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/click/core.py", line 1157, in call
return self.main(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/rich_click/rich_command.py", line 126, in main
rv = self.invoke(ctx)
^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/click/core.py", line 1688, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/media/ps/4T/CPhasing/cphasing/cli.py", line 995, in pipeline
run(fasta,
^^^^^^^^^^
File "/media/ps/4T/CPhasing/cphasing/pipeline/pipeline.py", line 1090, in run
plot.main(args=args,
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/rich_click/rich_command.py", line 126, in main
rv = self.invoke(ctx)
^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/media/ps/4T/CPhasing/cphasing/cli.py", line 5052, in plot
matrix = coarsen_matrix(matrix, factor, None, threads)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/media/ps/4T/CPhasing/cphasing/plot.py", line 648, in coarsen_matrix
coarsen.main(args=[cool,
^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/click/core.py", line 1078, in main
rv = self.invoke(ctx)
^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/cooler/cli/coarsen.py", line 84, in coarsen
coarsen_cooler(
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/cooler/reduce.py", line 740, in coarsen_cooler
create(
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/cooler/create/_create.py", line 681, in create
nnz, ncontacts = write_pixels(
^^^^^^^^^^^^^
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/cooler/create/_create.py", line 235, in write_pixels
for i, chunk in enumerate(iterable):
File "/home/ps/anaconda3/envs/cphasing/lib/python3.12/site-packages/cooler/create/_ingest.py", line 404, in _validate_pixels
raise BadInputError("Found bin ID < 0")
cooler.create._ingest.BadInputError: Found bin ID < 0

[wangyibin]

Hi,
Sorry for the late reply.
I failed to repeat this bug; I tried to fix this bug in the new version of v0.2.0.r278.

Best regards,
Yibin