DESCRIPTION

Type: Package
Package: MetaScope
Title: Tools and functions for preprocessing 16S and metagenomic
    sequencing microbiome data
Version: 1.7.2
Authors@R: c(
    person("Aubrey", "Odom", , "aodom@bu.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-7113-7598")),
    person("Rahul", "Varki", , "rvarki@bu.edu", role = "aut"),
    person("W. Evan", "Johnson", , "wej@bu.edu", role = "aut",
           comment = c(ORCID = "0000-0002-6247-6595")),
    person("Howard", "Fan", , "hjfan@bu.edu", role = "ctb")
  )
Description: This package contains tools and methods for preprocessing
    microbiome data. Functionality includes library generation,
    demultiplexing, alignment, and microbe identification.  It is in part
    an R translation of the PathoScope 2.0 pipeline.
License: GPL (>= 3)
URL: https://github.com/wejlab/metascope
    https://wejlab.github.io/metascope-docs/
BugReports: https://github.com/wejlab/MetaScope/issues
Depends:
    R (>= 4.4.0)
Imports:
    BiocFileCache,
    Biostrings,
    data.table (>= 1.16.2),
    dplyr,
    ggplot2,
    magrittr,
    Matrix,
    MultiAssayExperiment,
    Rbowtie2,
    readr,
    rlang,
    Rsamtools,
    S4Vectors,
    stringr,
    SummarizedExperiment,
    taxonomizr,
    tibble,
    tidyr,
    tools
Suggests:
    animalcules,
    BiocStyle,
    biomformat,
    GenomicRanges,
    IRanges,
    knitr,
    lintr,
    plyr,
    R.utils,
    rmarkdown,
    Rsubread,
    spelling,
    sys,
    testthat,
    usethis
Enhances:
    BiocParallel
VignetteBuilder:
    knitr
BiocType: Software
biocViews: MicrobiomeData, ReproducibleResearch, SequencingData
Encoding: UTF-8
Language: en-US
LazyData: FALSE
RoxygenNote: 7.3.2