Help with M1 MacOS (Apple Silicon) testing?

[whitews]

Hi All,

If anyone has access to an M1 Mac & wants to help with some testing, let me know below.

This is primarily related to moving all the C extensions into FlowUtils. The idea is that FlowUtils is a more stable code base that is not updated often. If I provide pre-built wheels with the compiled binaries then it's easier for non-technical users to install the suite of Flow packages...no need to find and install a compiler (and/or Visual Studio, Xcode, etc.).

Thanks,
Scott

[sbenz]

Hey Scott,

As mentioned in the other issue I have an M1 mac and I’m happy to run through some testing of new releases. Thanks!

-Steve

[sbenz]

Hey Scott,

Quick update - the default python3 / pip version in Monterey (v.12.3.1) tries to grab the source tar, but when I update pip first then it's able to grab the wheel:

❯ python3 --version
Python 3.8.9
❯ python3 -m venv .venv
❯ source .venv/bin/activate
❯ pip install --no-cache-dir --pre flowutils
Collecting flowutils
  Downloading FlowUtils-1.0.0rc1.tar.gz (14 kB)
^CERROR: Operation cancelled by user
WARNING: You are using pip version 20.2.3; however, version 22.0.4 is available.
You should consider upgrading via the '/Users/sbenz/Software/flowkit-testing/.venv/bin/python3 -m pip install --upgrade pip' command.
❯ pip install -U pip
Collecting pip
  Using cached pip-22.0.4-py3-none-any.whl (2.1 MB)
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 20.2.3
    Uninstalling pip-20.2.3:
      Successfully uninstalled pip-20.2.3
Successfully installed pip-22.0.4
❯ pip install --no-cache-dir --pre flowutils
Collecting flowutils
  Downloading FlowUtils-1.0.0rc1-cp38-cp38-macosx_11_0_arm64.whl (20 kB)
Collecting numpy>=1.20
  Downloading numpy-1.22.3-cp38-cp38-macosx_11_0_arm64.whl (12.7 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.7/12.7 MB 74.9 MB/s eta 0:00:00
Installing collected packages: numpy, flowutils
Successfully installed flowutils-1.0.0rc1 numpy-1.22.3

So may be good to note that in the install directions.

When I move onto python setup.py install it fails trying to compile statsmodels==0.13.2

❯ python setup.py install
running install
running bdist_egg
running egg_info
creating FlowKit.egg-info
writing FlowKit.egg-info/PKG-INFO
writing dependency_links to FlowKit.egg-info/dependency_links.txt
writing requirements to FlowKit.egg-info/requires.txt
writing top-level names to FlowKit.egg-info/top_level.txt
writing manifest file 'FlowKit.egg-info/SOURCES.txt'
reading manifest file 'FlowKit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'FlowKit.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.14-arm64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/flowkit
copying flowkit/_version.py -> build/lib/flowkit
copying flowkit/__init__.py -> build/lib/flowkit
copying flowkit/_conf.py -> build/lib/flowkit
creating build/lib/flowkit/_utils
copying flowkit/_utils/wsp_utils.py -> build/lib/flowkit/_utils
copying flowkit/_utils/__init__.py -> build/lib/flowkit/_utils
copying flowkit/_utils/sample_utils.py -> build/lib/flowkit/_utils
copying flowkit/_utils/plot_utils.py -> build/lib/flowkit/_utils
copying flowkit/_utils/xml_utils.py -> build/lib/flowkit/_utils
creating build/lib/flowkit/tests
copying flowkit/tests/matrix_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/transform_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/string_repr_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/gating_strategy_prog_gate_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/session_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/gating_strategy_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/export_gml_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/gatingml_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/__init__.py -> build/lib/flowkit/tests
copying flowkit/tests/gate_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/sample_export_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/gating_results_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/flowjo_wsp_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/plot_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/sample_tests.py -> build/lib/flowkit/tests
copying flowkit/tests/sample_utils_tests.py -> build/lib/flowkit/tests
creating build/lib/flowkit/_resources
copying flowkit/_resources/__init__.py -> build/lib/flowkit/_resources
creating build/lib/flowkit/_models
copying flowkit/_models/gating_strategy.py -> build/lib/flowkit/_models
copying flowkit/_models/session.py -> build/lib/flowkit/_models
copying flowkit/_models/__init__.py -> build/lib/flowkit/_models
copying flowkit/_models/vertex.py -> build/lib/flowkit/_models
copying flowkit/_models/gating_results.py -> build/lib/flowkit/_models
copying flowkit/_models/sample.py -> build/lib/flowkit/_models
copying flowkit/_models/dimension.py -> build/lib/flowkit/_models
creating build/lib/flowkit/_models/gates
copying flowkit/_models/gates/_gates.py -> build/lib/flowkit/_models/gates
copying flowkit/_models/gates/__init__.py -> build/lib/flowkit/_models/gates
copying flowkit/_models/gates/_base_gate.py -> build/lib/flowkit/_models/gates
copying flowkit/_models/gates/_gml_gates.py -> build/lib/flowkit/_models/gates
copying flowkit/_models/gates/_wsp_gates.py -> build/lib/flowkit/_models/gates
creating build/lib/flowkit/_models/transforms
copying flowkit/_models/transforms/_gml_transforms.py -> build/lib/flowkit/_models/transforms
copying flowkit/_models/transforms/_wsp_transforms.py -> build/lib/flowkit/_models/transforms
copying flowkit/_models/transforms/__init__.py -> build/lib/flowkit/_models/transforms
copying flowkit/_models/transforms/_transforms.py -> build/lib/flowkit/_models/transforms
copying flowkit/_models/transforms/_base_transform.py -> build/lib/flowkit/_models/transforms
copying flowkit/_models/transforms/_matrix.py -> build/lib/flowkit/_models/transforms
copying flowkit/_resources/Transformations.v2.0.xsd -> build/lib/flowkit/_resources
copying flowkit/_resources/Gating-ML.v2.0.xsd -> build/lib/flowkit/_resources
copying flowkit/_resources/DataTypes.v2.0.xsd -> build/lib/flowkit/_resources
creating build/bdist.macosx-10.14-arm64
creating build/bdist.macosx-10.14-arm64/egg
creating build/bdist.macosx-10.14-arm64/egg/flowkit
creating build/bdist.macosx-10.14-arm64/egg/flowkit/_utils
copying build/lib/flowkit/_utils/wsp_utils.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_utils
copying build/lib/flowkit/_utils/__init__.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_utils
copying build/lib/flowkit/_utils/sample_utils.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_utils
copying build/lib/flowkit/_utils/plot_utils.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_utils
copying build/lib/flowkit/_utils/xml_utils.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_utils
copying build/lib/flowkit/_version.py -> build/bdist.macosx-10.14-arm64/egg/flowkit
creating build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/matrix_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/transform_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/string_repr_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/gating_strategy_prog_gate_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/session_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/gating_strategy_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/export_gml_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/gatingml_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/__init__.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/gate_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/sample_export_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/gating_results_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/flowjo_wsp_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/plot_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/sample_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/tests/sample_utils_tests.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/tests
copying build/lib/flowkit/__init__.py -> build/bdist.macosx-10.14-arm64/egg/flowkit
creating build/bdist.macosx-10.14-arm64/egg/flowkit/_resources
copying build/lib/flowkit/_resources/__init__.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_resources
copying build/lib/flowkit/_resources/Transformations.v2.0.xsd -> build/bdist.macosx-10.14-arm64/egg/flowkit/_resources
copying build/lib/flowkit/_resources/Gating-ML.v2.0.xsd -> build/bdist.macosx-10.14-arm64/egg/flowkit/_resources
copying build/lib/flowkit/_resources/DataTypes.v2.0.xsd -> build/bdist.macosx-10.14-arm64/egg/flowkit/_resources
copying build/lib/flowkit/_conf.py -> build/bdist.macosx-10.14-arm64/egg/flowkit
creating build/bdist.macosx-10.14-arm64/egg/flowkit/_models
creating build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates
copying build/lib/flowkit/_models/gates/_gates.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates
copying build/lib/flowkit/_models/gates/__init__.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates
copying build/lib/flowkit/_models/gates/_base_gate.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates
copying build/lib/flowkit/_models/gates/_gml_gates.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates
copying build/lib/flowkit/_models/gates/_wsp_gates.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates
copying build/lib/flowkit/_models/gating_strategy.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models
copying build/lib/flowkit/_models/session.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models
copying build/lib/flowkit/_models/__init__.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models
copying build/lib/flowkit/_models/vertex.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models
creating build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms
copying build/lib/flowkit/_models/transforms/_gml_transforms.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms
copying build/lib/flowkit/_models/transforms/_wsp_transforms.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms
copying build/lib/flowkit/_models/transforms/__init__.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms
copying build/lib/flowkit/_models/transforms/_transforms.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms
copying build/lib/flowkit/_models/transforms/_base_transform.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms
copying build/lib/flowkit/_models/transforms/_matrix.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms
copying build/lib/flowkit/_models/gating_results.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models
copying build/lib/flowkit/_models/sample.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models
copying build/lib/flowkit/_models/dimension.py -> build/bdist.macosx-10.14-arm64/egg/flowkit/_models
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_utils/wsp_utils.py to wsp_utils.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_utils/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_utils/sample_utils.py to sample_utils.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_utils/plot_utils.py to plot_utils.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_utils/xml_utils.py to xml_utils.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_version.py to _version.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/matrix_tests.py to matrix_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/transform_tests.py to transform_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/string_repr_tests.py to string_repr_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/gating_strategy_prog_gate_tests.py to gating_strategy_prog_gate_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/session_tests.py to session_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/gating_strategy_tests.py to gating_strategy_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/export_gml_tests.py to export_gml_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/gatingml_tests.py to gatingml_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/gate_tests.py to gate_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/sample_export_tests.py to sample_export_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/gating_results_tests.py to gating_results_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/flowjo_wsp_tests.py to flowjo_wsp_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/plot_tests.py to plot_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/sample_tests.py to sample_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/tests/sample_utils_tests.py to sample_utils_tests.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_resources/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_conf.py to _conf.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates/_gates.py to _gates.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates/_base_gate.py to _base_gate.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates/_gml_gates.py to _gml_gates.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gates/_wsp_gates.py to _wsp_gates.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gating_strategy.py to gating_strategy.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/session.py to session.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/vertex.py to vertex.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms/_gml_transforms.py to _gml_transforms.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms/_wsp_transforms.py to _wsp_transforms.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms/_transforms.py to _transforms.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms/_base_transform.py to _base_transform.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/transforms/_matrix.py to _matrix.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/gating_results.py to gating_results.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/sample.py to sample.cpython-38.pyc
byte-compiling build/bdist.macosx-10.14-arm64/egg/flowkit/_models/dimension.py to dimension.cpython-38.pyc
creating build/bdist.macosx-10.14-arm64/egg/EGG-INFO
copying FlowKit.egg-info/PKG-INFO -> build/bdist.macosx-10.14-arm64/egg/EGG-INFO
copying FlowKit.egg-info/SOURCES.txt -> build/bdist.macosx-10.14-arm64/egg/EGG-INFO
copying FlowKit.egg-info/dependency_links.txt -> build/bdist.macosx-10.14-arm64/egg/EGG-INFO
copying FlowKit.egg-info/requires.txt -> build/bdist.macosx-10.14-arm64/egg/EGG-INFO
copying FlowKit.egg-info/top_level.txt -> build/bdist.macosx-10.14-arm64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
creating dist
creating 'dist/FlowKit-0.9.0rc1-py3.8.egg' and adding 'build/bdist.macosx-10.14-arm64/egg' to it
removing 'build/bdist.macosx-10.14-arm64/egg' (and everything under it)
Processing FlowKit-0.9.0rc1-py3.8.egg
Copying FlowKit-0.9.0rc1-py3.8.egg to /Users/sbenz/Software/flowkit-testing/.venv/lib/python3.8/site-packages
Adding FlowKit 0.9.0rc1 to easy-install.pth file

Installed /Users/sbenz/Software/flowkit-testing/.venv/lib/python3.8/site-packages/FlowKit-0.9.0rc1-py3.8.egg
Processing dependencies for FlowKit==0.9.0rc1
Searching for statsmodels
Reading https://pypi.org/simple/statsmodels/
Downloading https://files.pythonhosted.org/packages/e1/4a/0eb4efa49cc352e2721e2aebfe8573264db2add195545ec3979c98040c3b/statsmodels-0.13.2.tar.gz#sha256=77dc292c9939c036a476f1770f9d08976b05437daa229928da73231147cde7d4
Best match: statsmodels 0.13.2
Processing statsmodels-0.13.2.tar.gz
Writing /var/folders/fh/hzvxhqgx4kg_778zhp28121w0000gn/T/easy_install-5j4f9vjm/statsmodels-0.13.2/setup.cfg
Running statsmodels-0.13.2/setup.py -q bdist_egg --dist-dir /var/folders/fh/hzvxhqgx4kg_778zhp28121w0000gn/T/easy_install-5j4f9vjm/statsmodels-0.13.2/egg-dist-tmp-y8ocbw71
warning: no files found matching '*.pxi' anywhere in distribution
warning: no previously-included files matching '*' found under directory 'build'
warning: no previously-included files matching '*' found under directory 'dist'
warning: no previously-included files matching '*' found under directory 'tools'
warning: no previously-included files found matching 'docs/source/generated/*'
warning: no files found matching '*' under directory 'docs/sphinxext'
warning: no files found matching '*' under directory 'docs/themes'
warning: no previously-included files matching '*' found under directory 'docs/build'
warning: no previously-included files matching '*' found under directory 'docs/build/htmlhelp'
warning: no files found matching 'statsmodels/statsmodelsdoc.chm'
no previously-included directories found matching '*/__pycache__'
warning: no previously-included files matching '*~' found anywhere in distribution
warning: no previously-included files matching '*.swp' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '*.bak' found anywhere in distribution
UPDATING build/lib.macosx-10.14-arm64-3.8/statsmodels/_version.py
set build/lib.macosx-10.14-arm64-3.8/statsmodels/_version.py to '0.13.2'

error: Setup script exited with error: SandboxViolation: mkdir('/Users/sbenz/Library/Caches/com.apple.python/private/var/folders/fh/hzvxhqgx4kg_778zhp28121w0000gn/T/easy_install-5j4f9vjm', 511) {}

The package setup script has attempted to modify files on your system
that are not within the EasyInstall build area, and has been aborted.

This package cannot be safely installed by EasyInstall, and may not
support alternate installation locations even if you run its setup
script by hand.  Please inform the package's author and the EasyInstall
maintainers to find out if a fix or workaround is available.

Haven't googled around yet to see if there's a quick solution to that one, but will do that now.

-Steve

[whitews]

Thanks Steve, I'll do the same...maybe statsmodels doesn't have a wheel for Apple Silicon yet

[sbenz]

Okay, for some reason I can install that and a few other packages separately:

❯ pip install statsmodels
Collecting statsmodels
  Using cached statsmodels-0.13.2-cp38-cp38-macosx_11_0_arm64.whl (9.1 MB)
...

❯ pip install psutil
Collecting psutil
  Using cached psutil-5.9.0.tar.gz (478 kB)
  Preparing metadata (setup.py) ... done
Building wheels for collected packages: psutil
  Building wheel for psutil (setup.py) ... done
  Created wheel for psutil: filename=psutil-5.9.0-cp38-cp38-macosx_10_14_arm64.whl size=265039 sha256=edd1478b559b4c01bc95df544e9cd45d3453df045ef2f618aa3745623e31be0f
  Stored in directory: /Users/sbenz/Library/Caches/pip/wheels/9c/28/d8/45cbe6aa547b8b581dfa337cb3aaec76f3029d22f1199fff9e
Successfully built psutil
Installing collected packages: psutil

❯ pip install lxml
Collecting lxml
  Using cached lxml-4.8.0.tar.gz (3.2 MB)
  Preparing metadata (setup.py) ... done
Building wheels for collected packages: lxml
  Building wheel for lxml (setup.py) ... done
  Created wheel for lxml: filename=lxml-4.8.0-cp38-cp38-macosx_10_14_arm64.whl size=3024274 sha256=1563f87a5abd9091146ca502ea9678511f8cf20d9dcbd6fee16af12fef20cc94
  Stored in directory: /Users/sbenz/Library/Caches/pip/wheels/b0/fd/85/b657b0bb522ca7820a9af40ad25cb9017e42823a0993244fda
Successfully built lxml
Installing collected packages: lxml
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
flowkit 0.9.0rc1 requires anytree>=2.6, which is not installed.
flowkit 0.9.0rc1 requires bokeh<3,>=2, which is not installed.
flowkit 0.9.0rc1 requires flowio<1.1,>=1, which is not installed.
Successfully installed lxml-4.8.0


❯ pip install flowio
Collecting flowio
  Using cached FlowIO-1.0.0-py3-none-any.whl
Installing collected packages: flowio


❯ pip install bokeh
Requirement already satisfied: bokeh in /Users/sbenz/Software/flowkit-testing/.venv/lib/python3.8/site-packages/bokeh-2.4.2-py3.8.egg (2.4.2)
Collecting Jinja2>=2.9
  Using cached Jinja2-3.1.1-py3-none-any.whl (132 kB)
Collecting PyYAML>=3.10
  Using cached PyYAML-6.0.tar.gz (124 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: numpy>=1.11.3 in /Users/sbenz/Software/flowkit-testing/.venv/lib/python3.8/site-packages (from bokeh) (1.22.3)
Requirement already satisfied: packaging>=16.8 in /Users/sbenz/Software/flowkit-testing/.venv/lib/python3.8/site-packages (from bokeh) (21.3)
Requirement already satisfied: pillow>=7.1.0 in /Users/sbenz/Software/flowkit-testing/.venv/lib/python3.8/site-packages (from bokeh) (9.1.0)
Collecting tornado>=5.1
  Using cached tornado-6.1.tar.gz (497 kB)
  Preparing metadata (setup.py) ... done
Requirement already satisfied: typing-extensions>=3.10.0 in /Users/sbenz/Software/flowkit-testing/.venv/lib/python3.8/site-packages/typing_extensions-4.2.0-py3.8.egg (from bokeh) (4.2.0)
Collecting MarkupSafe>=2.0
  Using cached MarkupSafe-2.1.1-cp38-cp38-macosx_10_9_universal2.whl (17 kB)
Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /Users/sbenz/Software/flowkit-testing/.venv/lib/python3.8/site-packages (from packaging>=16.8->bokeh) (3.0.8)
Building wheels for collected packages: PyYAML, tornado
  Building wheel for PyYAML (pyproject.toml) ... done
  Created wheel for PyYAML: filename=PyYAML-6.0-cp38-cp38-macosx_10_14_arm64.whl size=45339 sha256=ba503edb1f62804cc62cef169b77390c0b26ac2eeeb47b0e53b511627d4b1407
  Stored in directory: /Users/sbenz/Library/Caches/pip/wheels/52/84/66/50912fd7bf1639a31758e40bd4312602e104a8eca1e0da9645
  Building wheel for tornado (setup.py) ... done
  Created wheel for tornado: filename=tornado-6.1-cp38-cp38-macosx_10_14_arm64.whl size=418662 sha256=c3acb04b500e4b75c432212c95651c1c8a8f6e5a2b65ff5395888ed132d0f608
  Stored in directory: /Users/sbenz/Library/Caches/pip/wheels/6f/c2/a9/adcb8514b044bbf29d20a89d9a6be2549773d0d44666893112
Successfully built PyYAML tornado
Installing collected packages: tornado, PyYAML, MarkupSafe, Jinja2
Successfully installed Jinja2-3.1.1 MarkupSafe-2.1.1 PyYAML-6.0 tornado-6.1

Now the python setup.py install worked

[sbenz]

And the tests run successfully:

❯ python run_tests.py
......................................................................................................................................................................................................................................................................................................
----------------------------------------------------------------------
Ran 294 tests in 7.868s

OK

[whitews]

Great! The dependency installs needing to be done separate is odd, but not really related to the flowkit code.

Also good to know about the pip version needing to be upgraded, I'll update the README to include that.

Thanks again Steve!