NAMESPACE

# Generated by roxygen2: do not edit by hand

export("%<>%")
export("%>%")
export(cut_much)
export(deg_DESeq2)
export(deg_edgeR)
export(deg_limma)
export(deg_run)
export(enhance_barplot)
export(enhance_enrichGO)
export(enhance_gseplot)
export(enhance_heatmap)
export(enhance_volcano)
export(enrichGO_run)
export(enrichKEGG_run)
export(enrich_go)
export(enrich_gsekegg)
export(enrich_kegg)
export(enrichgesKEGG_run)
export(geskegg_barplot)
export(kegg_barplot)
export(pre_check)
export(runAll)
export(run_DESeq2)
export(run_edgeR)
export(run_limma)
export(top_deg)
exportClasses(DEG_container)
import(ggplot2)
importClassesFrom(DOSE,enrichResult)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importClassesFrom(methods,data.frame)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,keytypes)
importFrom(AnnotationDbi,toTable)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,plotDispEsts)
importFrom(DESeq2,results)
importFrom(DESeq2,rlogTransformation)
importFrom(DESeq2,varianceStabilizingTransformation)
importFrom(DOSE,setReadable)
importFrom(FactoMineR,PCA)
importFrom(GO.db,GOTERM)
importFrom(GOSemSim,load_OrgDb)
importFrom(RColorBrewer,brewer.pal)
importFrom(clusterProfiler,bitr)
importFrom(clusterProfiler,enrichKEGG)
importFrom(clusterProfiler,gseKEGG)
importFrom(clusterProfiler,simplify)
importFrom(data.table,.SD)
importFrom(data.table,data.table)
importFrom(dplyr,mutate)
importFrom(dplyr,top_n)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(edgeR,estimateGLMCommonDisp)
importFrom(edgeR,estimateGLMTagwiseDisp)
importFrom(edgeR,estimateGLMTrendedDisp)
importFrom(edgeR,glmFit)
importFrom(edgeR,glmLRT)
importFrom(edgeR,topTags)
importFrom(emoji,emoji)
importFrom(enrichplot,gseaplot2)
importFrom(factoextra,fviz_pca_ind)
importFrom(forcats,fct_reorder)
importFrom(fs,dir_create)
importFrom(fs,dir_exists)
importFrom(furrr,furrr_options)
importFrom(furrr,future_map)
importFrom(ggfun,element_roundrect)
importFrom(ggnewscale,new_scale_color)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,labs)
importFrom(ggplot2,theme)
importFrom(ggrepel,geom_text_repel)
importFrom(glue,glue)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,rainbow)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,par)
importFrom(graphics,strwidth)
importFrom(grid,grid.draw)
importFrom(kit,fduplicated)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(parallel,mclapply)
importFrom(pheatmap,pheatmap)
importFrom(plyr,l_ply)
importFrom(qvalue,qvalue)
importFrom(shadowtext,geom_shadowtext)
importFrom(stats,cor)
importFrom(stats,mad)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,relevel)
importFrom(stats,sd)
importFrom(stringr,str_wrap)
importFrom(utils,head)
importFrom(utils,stack)
importFrom(utils,tail)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importMethodsFrom(SummarizedExperiment,assay)