Help please ....error when loading the package

[ZoeyDing2022]

Please help me with this issue.. I am working with R 3.6.2 on Mac. I have tried all the ways to download the package, like from the source, github... but they all shows not available for 3.6.2. Finally, I downloaded the package on my computer and installed it manually. But when I am trying to load it with library(xtail), it didn't work.. I updated all my packages...Please... any suggestions?

library(xtail)
Loading required package: DESeq2
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, get,
grep, grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position,
rank, rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

expand.grid

Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and
for packages 'citation("pkgname")'.

Loading required package: DelayedArray
Loading required package: matrixStats

Attaching package: ‘matrixStats’

The following objects are masked from ‘package:Biobase’:

anyMissing, rowMedians

Loading required package: BiocParallel

Attaching package: ‘DelayedArray’

The following objects are masked from ‘package:matrixStats’:

colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges

The following objects are masked from ‘package:base’:

aperm, apply, rowsum

Error: package or namespace load failed for ‘xtail’:
package ‘xtail’ was installed by an R version with different internals; it needs to be reinstalled for use with this R version

[xug15]

Hi, we develop a docker image that swaps xtail into R to solve this problem.
You can see the manual from this link https://hub.docker.com/r/yanglab/xtail .

[ZoeyDing2022]

Thank you. I downloaded Docker and ran it. It seems working. But I don't know how to input my files. Where is the directory? When I ran it, it shows root@yanglab:/#, I am not good at bioinformatics and don't know if this means the directory is in your server? I just can't figure out where is the directory....

…

________________________________ 发件人: Xu Gang <[email protected]> 发送时间: 2020年4月24日 2:47 收件人: xryanglab/xtail <[email protected]> 抄送: Zola2021 <[email protected]>; Author <[email protected]> 主题: Re: [xryanglab/xtail] Help please ....error when loading the package (#15) Hi, we develop a docker image that swaps xtail into R to solve this problem. You can see manul from this link https://hub.docker.com/r/yanglab/xtail . ― You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#15 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/APJASNYKB2VTFA4HMIYXO2TROD4S7ANCNFSM4MOX2OLA>.

[xug15]

I polished the manual: https://hub.docker.com/r/yanglab/xtail .

If your data is stored in this directory:/user/name/data_path, for example, you can bind this directory into docker container. You can replace this path:/user/name/data_path with the real path in your local server..

#If your data is stored in this directory:/user/name/data_path
ls -l /user/name/data_path
# stop old container
docker stop xtail
# remove the old container
docker rm xtail
# Start a container
#  -v /user/name/data_path:/home/test/share mean you will bind the directory /user/name/data_path in your local server into the docker container directory /home/test/share.
# You can change the path with your real local path.
# start a new container
docker run --name=xtail -dt  -h yanglab --restart unless-stopped -v /user/name/data_path:/home/test/share yanglab/xtail
# You can see the share fold data from /home/test/share
ls /home/test/share

[ZoeyDing2022]

Thank you very much. I am able to run it now!

…

________________________________ 发件人: Xu Gang <[email protected]> 发送时间: 2020年4月25日 1:32 收件人: xryanglab/xtail <[email protected]> 抄送: Zola2021 <[email protected]>; Author <[email protected]> 主题: Re: [xryanglab/xtail] Help please ....error when loading the package (#15) I polished the manual: https://hub.docker.com/r/yanglab/xtail . If your data is stored in this directory:/user/name/data_path, for example, you can bind this file into docker container. You can replace this path:/user/name/data_path with the real path in your local server.. #If your data is stored in this directory:/user/name/data_path ls -l /user/name/data_path stop old container docker stop xtail remove the old container docker rm xtail Start a container -v /user/name/data_path:/home/test/share mean you will bind the directory /user/name/data_path in your local server into the docker container directory /home/test/share. You can change the path with your real local data. start a new container docker run --name=xtail -dt -h yanglab --restart unless-stopped -v /user/name/data_path:/home/test/share yanglab/xtail You can see the share fold data from /home/test/share ls /home/test/share ― You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#15 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/APJASN74CAAPYDUWDXXCK6LROI4RZANCNFSM4MOX2OLA>.