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docs: refine README #5

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dominikburri opened this issue Sep 16, 2022 · 1 comment
Open
3 tasks

docs: refine README #5

dominikburri opened this issue Sep 16, 2022 · 1 comment

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@dominikburri
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  • test execution description should be before the DAG run. The test downloads additional files. How much disk space, approximately?
  • config.yaml can possibly include the same test files as the test run within test/test_singularity_execution/. Alternative: download the additional files as for the test run.
  • write how long the test will run on local and/or cluster execution.
@dominikburri
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dominikburri commented Sep 16, 2022

after executing bash test/test_singularity_execution/test_local.sh without cleanup, i.e. commenting it out:

cleanup () {
    rc=$?
#    rm -rf .cache/
#    rm -rf .config/
#    rm -rf .snakemake/
#    rm -rf logs/
#    rm -rf results/
    cd $user_dir
    echo "Exit status: $rc"
}

the RCRUNCH total directory size is: 4968M (with du -BM). This contains the test files plus the singularity images.

The test took approx. 8 minutes on cluster with local-singularity profile with the default 4 cores.

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