diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md new file mode 100644 index 0000000..dd84ea7 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/bug_report.md @@ -0,0 +1,38 @@ +--- +name: Bug report +about: Create a report to help us improve +title: '' +labels: '' +assignees: '' + +--- + +**Describe the bug** +A clear and concise description of what the bug is. + +**To Reproduce** +Steps to reproduce the behavior: +1. Go to '...' +2. Click on '....' +3. Scroll down to '....' +4. See error + +**Expected behavior** +A clear and concise description of what you expected to happen. + +**Screenshots** +If applicable, add screenshots to help explain your problem. + +**Desktop (please complete the following information):** + - OS: [e.g. iOS] + - Browser [e.g. chrome, safari] + - Version [e.g. 22] + +**Smartphone (please complete the following information):** + - Device: [e.g. iPhone6] + - OS: [e.g. iOS8.1] + - Browser [e.g. stock browser, safari] + - Version [e.g. 22] + +**Additional context** +Add any other context about the problem here. diff --git a/.github/ISSUE_TEMPLATE/feature_request.md b/.github/ISSUE_TEMPLATE/feature_request.md new file mode 100644 index 0000000..bbcbbe7 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/feature_request.md @@ -0,0 +1,20 @@ +--- +name: Feature request +about: Suggest an idea for this project +title: '' +labels: '' +assignees: '' + +--- + +**Is your feature request related to a problem? Please describe.** +A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] + +**Describe the solution you'd like** +A clear and concise description of what you want to happen. + +**Describe alternatives you've considered** +A clear and concise description of any alternative solutions or features you've considered. + +**Additional context** +Add any other context or screenshots about the feature request here. diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..851a327 --- /dev/null +++ b/.gitignore @@ -0,0 +1,10 @@ +# all backup emacs and vim files +*~ + +# mac files +.DS_Store +._* + +# snakemake internal directories for tests +tests/integration/execution/.snakemake/ +.snakemake/ diff --git a/.travis.yml b/.travis.yml new file mode 100644 index 0000000..5c14496 --- /dev/null +++ b/.travis.yml @@ -0,0 +1,124 @@ +language: bash + +os: + - linux + - osx + +install: + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo apt update; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; fi + - if [ "$TRAVIS_OS_NAME" = "osx" ]; then brew update; fi + - if [ "$TRAVIS_OS_NAME" = "osx" ]; then wget https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O miniconda.sh; fi + - bash miniconda.sh -b -p $HOME/miniconda + - source "$HOME/miniconda/etc/profile.d/conda.sh" + - hash -r + - conda config --set always_yes yes --set changeps1 no + - conda update -q conda + # Useful for debugging any issues with conda + - conda info -a + # Install singularity + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo apt-get install -y wget; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo apt-get install -y build-essential; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo apt-get install -y uuid-dev ; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo apt-get install -y squashfs-tools; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo apt-get install -y libseccomp-dev; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo apt-get install -y pkg-config; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo apt-get install -y cryptsetup-bin; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then eval "$(gimme 1.13.1)"; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then go version; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then export VERSION=3.5.2; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then wget https://github.com/sylabs/singularity/releases/download/v${VERSION}/singularity-${VERSION}.tar.gz; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then tar -xzf singularity-${VERSION}.tar.gz; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then cd singularity; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then ./mconfig; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then make -C ./builddir; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo make -C ./builddir install; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then singularity --version; fi + - if [ "$TRAVIS_OS_NAME" = "linux" ]; then cd ..; fi + +before_script: + # Create conda virtual environments + - conda env create -f envs/main.yml + - conda env create -f envs/dev.yml + - conda env create -f workflow/envs/plot_heatmap_of_MotEvo_results.yml + - conda env create -f workflow/envs/combine-motevo-results.yml + - conda env create -f workflow/envs/plot_sequence_logos.yml + # Activate the main env + - conda activate binding-scanner && echo $CONDA_DEFAULT_ENV + +script: + # Download and extract the ATtRACT db + #- bash scripts/download-ATtRACT-motifs.sh -o ATtRACT # this curl/wget do not work on Travis machine... + # Extract the backup db + - mkdir ATtRACT_backup_26082020 + - unzip resources/ATtRACT_backup_26082020.zip -d ATtRACT_backup_26082020 + # Extract motifs for Homo sapiens + - mkdir tests/unit/format-ATtRACT-motifs/ATtRACT_hsa + - > + python scripts/format-ATtRACT-motifs.py + --pwms tests/unit/format-ATtRACT-motifs/ATtRACT/pwm.txt + --names tests/unit/format-ATtRACT-motifs/ATtRACT/ATtRACT_db.txt + --organism Homo_sapiens + --outdir tests/unit/format-ATtRACT-motifs/ATtRACT_hsa + - md5sum --check tests/unit/format-ATtRACT-motifs/expected_output_hsa.md5 + # Extract motifs for Mus musculus + - mkdir tests/unit/format-ATtRACT-motifs/ATtRACT_mmu + - > + python scripts/format-ATtRACT-motifs.py + --pwms tests/unit/format-ATtRACT-motifs/ATtRACT/pwm.txt + --names tests/unit/format-ATtRACT-motifs/ATtRACT/ATtRACT_db.txt + --organism Mus_musculus + --outdir tests/unit/format-ATtRACT-motifs/ATtRACT_mmu + - md5sum --check tests/unit/format-ATtRACT-motifs/expected_output_mmu.md5 + # Test sequence_logos.py script + - conda activate plot_sequence_logos + - > + python workflow/scripts/sequence_logos.py + --input_file tests/unit/plot_sequence_logos/motif_HNRNPF_820 + --output_location tests/unit/plot_sequence_logos + - > + python workflow/scripts/sequence_logos.py + --input_file tests/unit/plot_sequence_logos/motif_HNRNPF_821 + --output_location tests/unit/plot_sequence_logos + - > + python workflow/scripts/sequence_logos.py + --input_file tests/unit/plot_sequence_logos/motif_HNRNPF_822 + --output_location tests/unit/plot_sequence_logos + - > + python workflow/scripts/sequence_logos.py + --input_file tests/unit/plot_sequence_logos/motif_HNRNPF_823 + --output_location tests/unit/plot_sequence_logos + - > + python workflow/scripts/sequence_logos.py + --input_file tests/unit/plot_sequence_logos/motif_HNRNPF_824 + --output_location tests/unit/plot_sequence_logos + - md5sum --check tests/unit/plot_sequence_logos/expected_output.md5 + # Test combine-motevo-results.py script + - conda activate combine-motevo-results + - > + python workflow/scripts/combine-motevo-results.py + --input_directories tests/unit/combine_results/motif_HNRNPF_820 tests/unit/combine_results/motif_HNRNPF_821 tests/unit/combine_results/motif_HNRNPF_822 tests/unit/combine_results/motif_HNRNPF_823 tests/unit/combine_results/motif_HNRNPF_824 + --filename posterior_sites + --outfile tests/unit/combine_results/combined_MotEvo_results.tsv + - md5sum --check tests/unit/combine_results/expected_output.md5 + # Test heatmap.r script + - conda activate plot_heatmap_of_MotEvo_results + - > + Rscript workflow/scripts/heatmap.r + --input_tsv tests/unit/Plot-heatmap-for-motifs/combined_MotEvo_results.tsv + --input_sequence ATGTGAGTGAAGTGTGGGAAAGATGACTCGATATATCTGGATGCTAGGGATCGGATGGCGATACG + --outfile tests/unit/Plot-heatmap-for-motifs/ProbabilityvsSequences.pdf + --sequence_logos_directory tests/unit/Plot-heatmap-for-motifs/sequence_logos + #- md5sum --check tests/unit/Plot-heatmap-for-motifs/expected_output.md5 + - conda activate binding-scanner + # Test snakemake Rulegraph and DAG + - bash tests/integration/execution/snakemake_rulegraph_run.sh + - bash tests/integration/execution/snakemake_dag_run.sh + # Test pipeline execution: local, conda envs: + - bash tests/integration/execution/snakemake_local_run_conda_environments.sh + - md5sum --check tests/integration/expected_output.md5 + - rm -rf tests/integration/output/ + # On Linux: Test pipeline execution: local, singularity containers: + # - if [ "$TRAVIS_OS_NAME" = "linux" ]; then bash tests/integration/execution/snakemake_local_run_singularity_environments.sh; fi + # - if [ "$TRAVIS_OS_NAME" = "linux" ]; then md5sum --check tests/integration/expected_output_singularity.md5; fi + # - if [ "$TRAVIS_OS_NAME" = "linux" ]; then rm -rf tests/integration/output/; fi diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md new file mode 100644 index 0000000..60b43e8 --- /dev/null +++ b/CODE_OF_CONDUCT.md @@ -0,0 +1,73 @@ +# Contributor Covenant Code of Conduct + +## Our Pledge + +In the interest of fostering an open and welcoming environment, we as +contributors and maintainers pledge to making participation in our project and +our community a harassment-free experience for everyone, regardless of age, body +size, disability, ethnicity, sex characteristics, gender identity and expression, +level of experience, education, socio-economic status, nationality, personal +appearance, race, religion, or sexual identity and orientation. + +## Our Standards + +Examples of behavior that contributes to creating a positive environment +include: + +* Using welcoming and inclusive language +* Being respectful of differing viewpoints and experiences +* Gracefully accepting constructive criticism +* Focusing on what is best for the community +* Showing empathy towards other community members + +Examples of unacceptable behavior by participants include: + +* The use of sexualized language or imagery and unwelcome sexual attention or + advances +* Trolling, insulting/derogatory comments, and personal or political attacks +* Public or private harassment +* Publishing others' private information, such as a physical or electronic + address, without explicit permission +* Other conduct which could reasonably be considered inappropriate in a + professional setting + +## Our Responsibilities + +Project maintainers are responsible for clarifying the standards of acceptable +behavior and are expected to take appropriate and fair corrective action in +response to any instances of unacceptable behavior. + +Project maintainers have the right and responsibility to remove, edit, or +reject comments, commits, code, wiki edits, issues, and other contributions +that are not aligned to this Code of Conduct, or to ban temporarily or +permanently any contributor for other behaviors that they deem inappropriate, +threatening, offensive, or harmful. + +## Scope + +This Code of Conduct applies both within project spaces and in public spaces +when an individual is representing the project or its community. Examples of +representing a project or community include using an official project e-mail +address, posting via an official social media account, or acting as an appointed +representative at an online or offline event. Representation of a project may be +further defined and clarified by project maintainers. + +## Enforcement + +Instances of abusive, harassing, or otherwise unacceptable behavior may be +reported by contacting the project team at . All complaints will be +reviewed and investigated and will result in a response that is deemed necessary +and appropriate to the circumstances. The project team is obligated to maintain +confidentiality with regard to the reporter of an incident. Further details of +specific enforcement policies may be posted separately. + +Project maintainers who do not follow or enforce the Code of Conduct in good +faith may face temporary or permanent repercussions as determined by other +members of the project's leadership. + +## Attribution + +This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4, +available at + +[homepage]: https://www.contributor-covenant.org \ No newline at end of file diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 0000000..09e4de0 --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,151 @@ +# Guidelines for contributing + +## General workflow + +We are using [Git][res-git], [GitHub][res-github] and [Git Flow][res-git-flow]. + +> **Note:** If you are a **beginner** and do not have a lot of experience with +> this sort of workflow, please do not feel overwhelmed. We will guide you +> through the process until you feel comfortable using it. And do not worry +> about mistakes either - everybody does them. Often! Our project layout makes +> it very very hard for anyone to cause irreversible harm, so relax, try things +> out, take your time and enjoy the work! :) + +## Issue tracker + +Please use each project's GitHub [issue tracker][res-issue-tracker] to: + +- find issues to work on +- report bugs +- propose features +- discuss future directions + +## Submitting issues + +Please choose a template when submitting an issue: choose the [Bug report +template][res-bug-report] only when reporting bugs; for all other issues, +choose the [Feature request template][res-feature-request]. Please follow the +instructions in the template. + +You do not need to worry about adding labels or milestones for an issue, the +project maintainers will do that for you. However, it is important that all +issues are written concisely, yet with enough detail and with proper +references (links, screenshots, etc.) to allow other contributors to start +working on them. For bug reports, it is essential that they include +reproducible examples. + +Please **do not** use the issue tracker to ask usage questions, installation +problems etc., unless they appear to be bugs. For these issues, please use +the [communication channels](#communication) outlined below. + +## Communication + +If you want to reach out to us (e.g., to discuss potential issues for you to +work on), check the [main documentation][res-docs] for contact information. + +## Code style & testing + +To make it easier for everyone to maintain, read and contribute to the code, +as well as to ensure that the code base is robust and of high quality, we +would kindly ask you to stick to the following guidelines for code style and +testing. + +- Please use a recent version of [Python 3][res-py] (3.7.4+) +- Please try to conform to the used code, docstring and commenting style within + a project to maintain consistency +- Please use type hints for all function/method signatures + (exception: tests) +- Please use the following linters (use default settings unless otherwise + stated): + - [`shellcheck`][res-sh-shellcheck] + - [`flake8`][res-py-flake8] +- Please use the following test suites: + - [`pytest`][res-py-pytest] + - [`coverage`][res-py-coverage] + +## Commit messages + +In an effort to increase consistency, simplify maintenance and enable automated +change logs, we would like to kindly ask you to write _semantic commit +messages_, as described in the [Conventional Commits +specification][res-conv-commits]. + +The general structure of _Conventional Commits_ is as follows: + +```console +[optional scope]: + +[optional body] + +[optional footer] +``` + +Depending on the changes, please use one of the following **type** prefixes: + +| Type | Description | +| --- | --- | +| build | The build type (formerly known as chore) is used to identify development changes related to the build system (involving scripts, configurations or tools) and package dependencies. | +| ci | The ci type is used to identify development changes related to the continuous integration and deployment system - involving scripts, configurations or tools. | +| docs | The docs type is used to identify documentation changes related to the project - whether intended externally for the end users (in case of a library) or internally for the developers. | +| feat | The feat type is used to identify production changes related to new backward-compatible abilities or functionality. | +| fix | The fix type is used to identify production changes related to backward-compatible bug fixes. | +| perf | The perf type is used to identify production changes related to backward-compatible performance improvements. | +| refactor | The refactor type is used to identify development changes related to modifying the codebase, which neither adds a feature nor fixes a bug - such as removing redundant code, simplifying the code, renaming variables, etc. | +| revert | For commits that revert one or more previous commits. | +| style | The style type is used to identify development changes related to styling the codebase, regardless of the meaning - such as indentations, semi-colons, quotes, trailing commas and so on. | +| test | The test type is used to identify development changes related to tests - such as refactoring existing tests or adding new tests. | + +In order to ensure that the format of your commit messages adheres to the +Conventional Commits specification and the defined type vocabulary, you can +use the [dedicated linter][res-conv-commits-lint]. More information about +_Conventional Commits_ can also be found in this [blog +post][res-conv-commits-blog]. + +## Merging your code + +Here is a check list that you can follow to make sure that code merges +happen smoothly: + +1. [Open an issue](#submitting-issues) _first_ to give other contributors a + chance to discuss the proposed changes (alternatively: assign yourself + to one of the existing issues) +2. Clone the repository, create a feature branch off of the default branch + (never commit changes to protected branches directly) and implement your + code changes +3. If applicable, update relevant sections of the [documentation][res-documentation] +4. Add or update tests; untested code will not be merged; refer to the + [guidelines](#code-style--testing) above for details +5. Ensure that your coding style is in line with the + [guidelines](#code-style--testing) described above +6. Ensure that all tests and linter checks configured in the [Travis + CI][res-travis-docs] [continuous integration][res-ci-cd] (CI) pipeline pass without + issues +7. If necessary, clean up excessive commits with `git rebase`; cherry-pick and + merge commits as you see fit; use concise and descriptive commit messages +8. Push your clean, tested and documented feature branch to the remote; make + sure the Travis CI pipeline passes +9. Issue a pull request against the default branch; follow the instructions in + the [template][res-pull-request]; importantly, describe your changes in + detail, yet with concise language, and do not forget to indicate which + issue(s) the code changes resolve or refer to; assign a project maintainer + to review your changes + +[res-git]: +[res-github]: +[res-git-flow]: +[res-issue-tracker]: +[res-bug-report]: .github/ISSUE_TEMPLATE/bug_report.md +[res-feature-request]: .github/ISSUE_TEMPLATE/feature_request.md +[res-py]: +[res-sh-shellcheck]: +[res-py-flake8]: +[res-py-pytest]: +[res-py-coverage]: +[res-conv-commits]: +[res-conv-commits-lint]: +[res-conv-commits-blog]: +[res-docs]: README.md +[res-documentation]: workflow/documentation.md +[res-ci-cd]: +[res-travis-docs]: +[res-pull-request]: PULL_REQUEST_TEMPLATE.md diff --git a/PULL_REQUEST_TEMPLATE.md b/PULL_REQUEST_TEMPLATE.md new file mode 100644 index 0000000..7728aa4 --- /dev/null +++ b/PULL_REQUEST_TEMPLATE.md @@ -0,0 +1,24 @@ +## Description + +Please include a summary of the change and which issue is fixed. Please also include relevant motivation and context. List any dependencies that are required for this change. + +Fixes # (issue) + +## Type of change + +Please delete options that are not relevant. + +- [ ] Bug fix (non-breaking change which fixes an issue) +- [ ] New feature (non-breaking change which adds functionality) +- [ ] Breaking change (fix or feature that would cause existing functionality to not work as expected) +- [ ] Documentation updated + +## Checklist: + +- [ ] My code follows the style guidelines of this project +- [ ] I have performed a self-review of my own code +- [ ] I have commented my code, particularly in hard-to-understand areas +- [ ] My changes generate no new warnings +- [ ] I have added tests that prove my fix is effective or that my feature works +- [ ] New and existing unit tests pass locally with my changes +- [ ] I have not reduced the existing code coverage \ No newline at end of file diff --git a/README.md b/README.md index bdecbcd..231b7d1 100644 --- a/README.md +++ b/README.md @@ -1 +1,181 @@ -Binding Scanner \ No newline at end of file + + +# BindingScanner + +BindingScanner is a tool for predicting binding sites of RNA-binding proteins in a given input RNA sequence, implemented in a snakemake pipeline. + +## Table of Contents + +- [BindingScanner](#bindingscanner) + - [Table of Contents](#table-of-contents) + - [General information](#general-information) + - [Installation instructions](#installation-instructions) + - [Step 1: Download and install Miniconda3](#step-1-download-and-install-miniconda3) + - [Step 2: Clone the repository](#step-2-clone-the-repository) + - [Step 3: Build and activate virtual environment for BindingScanner](#step-3-build-and-activate-virtual-environment-for-bindingscanner) + - [Optional: Download and parse PWMs from ATtRACT database](#optional-download-and-parse-pwms-from-attract-database) + - [Workflow execution](#workflow-execution) + - [Contributing](#contributing) + - [Contact](#contact) + +## General information + +BindingScanner is a tool for predicting binding sites of distinct regulators in an RNA sequence by calculating posterior probabilities with [MotEvo], given the sequence specificity of regulators, represented as position-specific weight matrices. It is intended to help in the analysis of individual reporter sequences, by predicting regulatory that may act on the sequence as well as how the binding may be affected by specific mutations introduced in the reporter sequences. The tools scans the input sequence with a set of position-specific weight matrices (PWMs) representing the binding specificity of individual RNA-binding proteins. The run time scales linearly with both the sequence length and with the number of PWMs, so please make sure to test it on your architecture before running it on batches of sequences. + +The tool is implemented as a [Snakemake] workflow. + +> ![rule_graph][rule-graph] + +The main output of the pipeline are: a tab-separated file (`combined_MotEvo_results.tsv`) and a PDF-formatted image (`ProbabilityVsSequence.pdf`). The former collects all predicted binding sites of all analyzed motifs into one table and reports: binding positions (relative to the input sequence start), binding posterior probability, bound subsequence as well as binding energy. The latter is a visualisation of these binding probabilities in a form of a heatmap. + +## Installation instructions + +Snakemake is a workflow management system that helps to create and execute data processing pipelines. It requires [Python 3] and can be most easily installed via the [bioconda] channel from the [anaconda cloud] service. + +### Step 1: Download and install Miniconda3 + +To install the latest version of [miniconda] please execute: + +[Linux]: + +```bash +wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh +bash Miniconda3-latest-Linux-x86_64.sh +source .bashrc +``` + +[macOS]: + +```bash +wget https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh +bash Miniconda3-latest-MacOSX-x86_64.sh +source .bashrc +``` + +### Step 2: Clone the repository + +Cloning repositories requires [git] to be installed (available via `conda`): + +```bash +conda install git +``` + +Clone this git repository into a desired location (here: binding_scanner_git in the current working directory ) with the following command: + +```bash +git clone https://github.com/zavolanlab/binding-scanner.git binding_scanner_git +``` + +### Step 3: Build and activate virtual environment for BindingScanner + +To help the users in the installation process we have prepared a recipe for a *conda* virtual environment that contains all the software needed to run BindingScanner. This environment can be created by the following script: + +```bash +bash binding_scanner_git/scripts/create-conda-environment-main.sh +``` + +The built *conda* environment may then be activated with: + +```bash +conda activate binding-scanner +``` + +## Optional: Download and parse PWMs from ATtRACT database + +Inside this repository we have included a snapshot of a database of Position Weight Matrices for distinct RNA binding proteins ([ATtRACT]: 26-08-2020). We suggest to use the pre-formatted files which we have already prepared: `resources/ATtRACT_hsa` and `resources/ATtRACT_mmu` for *Homo sapiens* and *Mus musculus*, respectively. + +However, if the user would like to download and parse a new version of matrices from ATtRACT we describe the procedure below: + +Please change directory to the pipeline's root directory: + +```bash +cd binding_scanner_git +``` + +To utilize position-specific weight matrices from the ATtRACT database of known RBPs' binding motifs we provide two scripts: + +1. Download and extract the database into a directory `ATtRACT` under `resources`: + ```bash + bash scripts/download-ATtRACT-motifs.sh -o resources/ATtRACT + ``` +2. Parse the database and reformat the PWMs into a TRANSFAC format (currently supported species are *Homo_sapiens* or *Mus_musculus*): + + *Homo sapiens* + ```bash + mkdir resources/ATtRACT/ATtRACT_hsa + python scripts/format-ATtRACT-motifs.py \ + --pwms resources/ATtRACT/pwm.txt \ + --names resources/ATtRACT/ATtRACT_db.txt \ + --organism Homo_sapiens \ + --outdir resources/ATtRACT/ATtRACT_hsa + ``` + + *Mus musculus* + ```bash + mkdir resources/ATtRACT/ATtRACT_mmu + python scripts/format-ATtRACT-motifs.py \ + --pwms resources/ATtRACT/pwm.txt \ + --names resources/ATtRACT/ATtRACT_db.txt \ + --organism Mus_musculus \ + --outdir resources/ATtRACT/ATtRACT_mmu + ``` + + To print information about the script's arguments please type: + + ``` + python scripts/format-ATtRACT-motifs.py --help + ``` + +## Workflow execution + +Please change directory to the pipeline's root directory: + +```bash +cd binding_scanner_git +``` + +All the input, output and parameters for the pipeline execution should be specified in a snakemake configuration file in YAML format. Such a file can be created based on our prepared template located at `workflow/config/config-template.yml`. Assuming that the user created a `config.yml` and saved it in the repository's root directory (and that it is the current working directory) the workflow can be executed on the local machine with: + +```bash +snakemake \ + --snakefile="workflow/Snakefile" \ + --configfile="config.yml" \ + --use-conda \ + --cores=1 \ + --printshellcmds \ + --verbose +``` + +We also provide a integration test for the pipeline on a small input dataset to examine if the installation was successful: + +```bash +bash tests/integration/execution/snakemake_local_run_conda_environments.sh +``` + +## Contributing + +This project lives off your contributions, be it in the form of bug reports, +feature requests, discussions, or fixes and other code changes. Please refer +to the [contributing guidelines](CONTRIBUTING.md) if you are interested to +contribute. Please mind the [code of conduct](CODE_OF_CONDUCT.md) for all +interactions with the community. + +## Contact + +For questions or suggestions regarding the code, please use the +[issue tracker][res-issue-tracker]. For any other inquiries, please contact us +by email: + +(c) 2020 [Zavolan lab, Biozentrum, University of Basel][res-zavolab] + +[MotEvo]: https://academic.oup.com/bioinformatics/article/28/4/487/212418 +[Snakemake]: https://snakemake.readthedocs.io/en/stable/ +[rule-graph]: images/rulegraph.svg +[Python 3]: https://www.python.org/download/releases/3.0/ +[bioconda]: https://bioconda.github.io/ +[anaconda cloud]: https://anaconda.org/ +[miniconda]: https://docs.conda.io/en/latest/miniconda.html +[git]: https://git-scm.com/ +[ATtRACT]: https://attract.cnic.es/index +[res-issue-tracker]: +[res-zavolab]: diff --git a/envs/dev.yml b/envs/dev.yml new file mode 100644 index 0000000..e3fed9d --- /dev/null +++ b/envs/dev.yml @@ -0,0 +1,38 @@ +############################################################################### +# +# Software to be installed in the environment +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 04-07-2020 +# LICENSE: Apache_2.0 +# +############################################################################### +--- + + name: binding-scanner-dev + + channels: + - bioconda + - conda-forge + + dependencies: + - bash=4.4.18 + - beautysh=6.0.1 + - coverage=5.1 + - curl=7.68.0 + - flake8=3.8.3 + - graphviz=2.38.0 + - jinja2=2.10 + - pandas=1.0.1 + - pulp=1.6.8 + - pytest=5.4.3 + - python=3.7.4 + - pyyaml=3.12 + - shellcheck=0.7.0 + - snakemake=5.24.2 + - unzip=6.0 + +... diff --git a/envs/main.yml b/envs/main.yml new file mode 100644 index 0000000..e00d647 --- /dev/null +++ b/envs/main.yml @@ -0,0 +1,33 @@ +############################################################################### +# +# Software to be installed in the environment +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 04-07-2020 +# LICENSE: Apache_2.0 +# +############################################################################### +--- + + name: binding-scanner + + channels: + - bioconda + - conda-forge + + dependencies: + - bash=4.4.18 + - curl=7.68.0 + - graphviz=2.38.0 + - jinja2=2.10 + - pandas=1.0.1 + - pulp=1.6.8 + - python=3.7.4 + - pyyaml=3.12 + - snakemake=5.24.2 + - unzip=6.0 + +... diff --git a/images/dag.svg b/images/dag.svg new file mode 100644 index 0000000..960ffba --- /dev/null +++ b/images/dag.svg @@ -0,0 +1,434 @@ + + + + + + +snakemake_dag + + +0 + +all + + +1 + +plot_heatmap_of_MotEvo_results + + +1->0 + + + + +2 + +combine_MotEvo_results + + +2->1 + + + + +3 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_825 + + +3->1 + + + + +4 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_829 + + +4->1 + + + + +5 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_826 + + +5->1 + + + + +6 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_821 + + +6->1 + + + + +7 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_827 + + +7->1 + + + + +8 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_823 + + +8->1 + + + + +9 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_828 + + +9->1 + + + + +10 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_822 + + +10->1 + + + + +11 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_820 + + +11->1 + + + + +12 + +plot_sequence_logos +pwm_dir: motif_HNRNPF_824 + + +12->1 + + + + +13 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_825 + + +13->2 + + + + +14 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_829 + + +14->2 + + + + +15 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_826 + + +15->2 + + + + +16 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_821 + + +16->2 + + + + +17 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_827 + + +17->2 + + + + +18 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_823 + + +18->2 + + + + +19 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_828 + + +19->2 + + + + +20 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_822 + + +20->2 + + + + +21 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_820 + + +21->2 + + + + +22 + +run_MotEvo_analysis +pwm_dir: motif_HNRNPF_824 + + +22->2 + + + + +23 + +create_results_directory +outdir: tests/integration/output + + +23->3 + + + + +23->4 + + + + +23->5 + + + + +23->6 + + + + +23->7 + + + + +23->8 + + + + +23->9 + + + + +23->10 + + + + +23->11 + + + + +23->12 + + + + +24 + +prepare_MotEvo_parameters + + +23->24 + + + + +25 + +prepare_sequence_for_MotEvo + + +23->25 + + + + +24->13 + + + + +24->14 + + + + +24->15 + + + + +24->16 + + + + +24->17 + + + + +24->18 + + + + +24->19 + + + + +24->20 + + + + +24->21 + + + + +24->22 + + + + +25->13 + + + + +25->14 + + + + +25->15 + + + + +25->16 + + + + +25->17 + + + + +25->18 + + + + +25->19 + + + + +25->20 + + + + +25->21 + + + + +25->22 + + + + + diff --git a/images/logo.128px.png b/images/logo.128px.png new file mode 100644 index 0000000..6783372 Binary files /dev/null and b/images/logo.128px.png differ diff --git a/images/rulegraph.svg b/images/rulegraph.svg new file mode 100644 index 0000000..140fec3 --- /dev/null +++ b/images/rulegraph.svg @@ -0,0 +1,98 @@ + + + + + + +snakemake_dag + + +0 + +all + + +1 + +plot_heatmap_of_MotEvo_results + + +1->0 + + + + +2 + +combine_MotEvo_results + + +2->1 + + + + +3 + +plot_sequence_logos + + +3->1 + + + + +4 + +run_MotEvo_analysis + + +4->2 + + + + +5 + +create_results_directory + + +5->3 + + + + +6 + +prepare_MotEvo_parameters + + +5->6 + + + + +7 + +prepare_sequence_for_MotEvo + + +5->7 + + + + +6->4 + + + + +7->4 + + + + + diff --git a/resources/ATtRACT_backup_26082020.zip b/resources/ATtRACT_backup_26082020.zip new file mode 100644 index 0000000..3581a06 Binary files /dev/null and b/resources/ATtRACT_backup_26082020.zip differ diff --git a/resources/ATtRACT_hsa/motif_A1CF_110 b/resources/ATtRACT_hsa/motif_A1CF_110 new file mode 100644 index 0000000..5b4eba6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_A1CF_110 @@ -0,0 +1,15 @@ +// +NA A1CF_110 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 0.962 97.115 +11 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_A1CF_M001_0.6 b/resources/ATtRACT_hsa/motif_A1CF_M001_0.6 new file mode 100644 index 0000000..b1e786e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_A1CF_M001_0.6 @@ -0,0 +1,11 @@ +// +NA A1CF_M001_0.6 + A C G T +01 39.533 10.551 10.551 39.364 +02 0.77 0.77 0.77 97.689 +03 97.689 0.77 0.77 0.77 +04 97.689 0.77 0.77 0.77 +05 0.77 0.77 0.77 97.689 +06 0.77 0.77 0.77 97.689 +07 32.113 14.38 47.837 5.669 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ACO1_M256_0.6 b/resources/ATtRACT_hsa/motif_ACO1_M256_0.6 new file mode 100644 index 0000000..1a5da65 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ACO1_M256_0.6 @@ -0,0 +1,10 @@ +// +NA ACO1_M256_0.6 + A C G T +01 5.455 63.636 14.545 16.364 +02 80.0 5.455 1.818 12.727 +03 16.364 1.0 80.818 1.818 +04 16.364 7.273 18.182 58.182 +05 20.0 12.727 63.636 3.636 +06 29.091 40.0 9.091 21.818 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ADAR_494 b/resources/ATtRACT_hsa/motif_ADAR_494 new file mode 100644 index 0000000..5df3275 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ADAR_494 @@ -0,0 +1,9 @@ +// +NA ADAR_494 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ADAR_536 b/resources/ATtRACT_hsa/motif_ADAR_536 new file mode 100644 index 0000000..2255ea5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ADAR_536 @@ -0,0 +1,8 @@ +// +NA ADAR_536 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_AGO1_359 b/resources/ATtRACT_hsa/motif_AGO1_359 new file mode 100644 index 0000000..768bd3d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_AGO1_359 @@ -0,0 +1,9 @@ +// +NA AGO1_359 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_AGO1_509 b/resources/ATtRACT_hsa/motif_AGO1_509 new file mode 100644 index 0000000..9afff69 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_AGO1_509 @@ -0,0 +1,14 @@ +// +NA AGO1_509 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_AGO2_399 b/resources/ATtRACT_hsa/motif_AGO2_399 new file mode 100644 index 0000000..43d8eba --- /dev/null +++ b/resources/ATtRACT_hsa/motif_AGO2_399 @@ -0,0 +1,14 @@ +// +NA AGO2_399 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_AGO2_414 b/resources/ATtRACT_hsa/motif_AGO2_414 new file mode 100644 index 0000000..6ae2a8c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_AGO2_414 @@ -0,0 +1,13 @@ +// +NA AGO2_414 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_AKAP1_97 b/resources/ATtRACT_hsa/motif_AKAP1_97 new file mode 100644 index 0000000..0c49ca4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_AKAP1_97 @@ -0,0 +1,12 @@ +// +NA AKAP1_97 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ANKHD1_M002_0.6 b/resources/ATtRACT_hsa/motif_ANKHD1_M002_0.6 new file mode 100644 index 0000000..e4b8b32 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ANKHD1_M002_0.6 @@ -0,0 +1,11 @@ +// +NA ANKHD1_M002_0.6 + A C G T +01 77.32 7.56 7.56 7.56 +02 0.43 0.43 98.709 0.43 +03 98.709 0.43 0.43 0.43 +04 0.43 98.709 0.43 0.43 +05 0.43 0.43 98.709 0.43 +06 22.881 10.209 0.43 66.48 +07 42.775 7.931 9.973 39.321 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_425 b/resources/ATtRACT_hsa/motif_CELF1_425 new file mode 100644 index 0000000..9fbefa3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_425 @@ -0,0 +1,10 @@ +// +NA CELF1_425 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_436 b/resources/ATtRACT_hsa/motif_CELF1_436 new file mode 100644 index 0000000..1e8f270 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_436 @@ -0,0 +1,9 @@ +// +NA CELF1_436 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_478 b/resources/ATtRACT_hsa/motif_CELF1_478 new file mode 100644 index 0000000..390e70e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_478 @@ -0,0 +1,9 @@ +// +NA CELF1_478 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_522 b/resources/ATtRACT_hsa/motif_CELF1_522 new file mode 100644 index 0000000..37fff67 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_522 @@ -0,0 +1,9 @@ +// +NA CELF1_522 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_542 b/resources/ATtRACT_hsa/motif_CELF1_542 new file mode 100644 index 0000000..c91ef70 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_542 @@ -0,0 +1,8 @@ +// +NA CELF1_542 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_592 b/resources/ATtRACT_hsa/motif_CELF1_592 new file mode 100644 index 0000000..8bb9c34 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_592 @@ -0,0 +1,11 @@ +// +NA CELF1_592 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_s84 b/resources/ATtRACT_hsa/motif_CELF1_s84 new file mode 100644 index 0000000..2a53ece --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_s84 @@ -0,0 +1,9 @@ +// +NA CELF1_s84 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_s85 b/resources/ATtRACT_hsa/motif_CELF1_s85 new file mode 100644 index 0000000..71e43ea --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_s85 @@ -0,0 +1,10 @@ +// +NA CELF1_s85 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_s86 b/resources/ATtRACT_hsa/motif_CELF1_s86 new file mode 100644 index 0000000..6f0c734 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_s86 @@ -0,0 +1,11 @@ +// +NA CELF1_s86 + A C G T +01 0.49 0.49 0.49 98.529 +02 0.49 0.49 98.529 0.49 +03 0.49 0.49 0.49 98.529 +04 0.49 0.49 49.51 49.51 +05 0.49 0.49 0.49 98.529 +06 0.49 0.49 98.529 0.49 +07 0.49 0.49 0.49 98.529 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_s87 b/resources/ATtRACT_hsa/motif_CELF1_s87 new file mode 100644 index 0000000..24bb6a0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_s87 @@ -0,0 +1,12 @@ +// +NA CELF1_s87 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_s88 b/resources/ATtRACT_hsa/motif_CELF1_s88 new file mode 100644 index 0000000..e01d904 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_s88 @@ -0,0 +1,13 @@ +// +NA CELF1_s88 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_s89 b/resources/ATtRACT_hsa/motif_CELF1_s89 new file mode 100644 index 0000000..b87e67f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_s89 @@ -0,0 +1,14 @@ +// +NA CELF1_s89 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_s90 b/resources/ATtRACT_hsa/motif_CELF1_s90 new file mode 100644 index 0000000..2097cf6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_s90 @@ -0,0 +1,15 @@ +// +NA CELF1_s90 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF1_s91 b/resources/ATtRACT_hsa/motif_CELF1_s91 new file mode 100644 index 0000000..0fd8f42 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF1_s91 @@ -0,0 +1,16 @@ +// +NA CELF1_s91 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 97.115 0.962 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF2_365 b/resources/ATtRACT_hsa/motif_CELF2_365 new file mode 100644 index 0000000..4a5eeff --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF2_365 @@ -0,0 +1,8 @@ +// +NA CELF2_365 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF2_602 b/resources/ATtRACT_hsa/motif_CELF2_602 new file mode 100644 index 0000000..7f77b87 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF2_602 @@ -0,0 +1,9 @@ +// +NA CELF2_602 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF2_603 b/resources/ATtRACT_hsa/motif_CELF2_603 new file mode 100644 index 0000000..ec07080 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF2_603 @@ -0,0 +1,9 @@ +// +NA CELF2_603 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF2_s4 b/resources/ATtRACT_hsa/motif_CELF2_s4 new file mode 100644 index 0000000..afab21d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF2_s4 @@ -0,0 +1,9 @@ +// +NA CELF2_s4 + A C G T +01 16.694 16.694 16.694 49.917 +02 16.694 0.083 41.611 41.611 +03 0.083 0.083 33.306 66.528 +04 0.083 8.389 33.306 58.223 +05 0.083 8.389 33.306 58.223 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF2_s5 b/resources/ATtRACT_hsa/motif_CELF2_s5 new file mode 100644 index 0000000..27f1a1b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF2_s5 @@ -0,0 +1,10 @@ +// +NA CELF2_s5 + A C G T +01 10.06 0.1 39.94 49.9 +02 20.02 0.1 20.02 59.861 +03 10.06 10.06 29.98 49.9 +04 0.1 0.1 39.94 59.861 +05 0.1 0.1 59.861 39.94 +06 0.1 0.1 20.02 79.781 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF4_M004_0.6 b/resources/ATtRACT_hsa/motif_CELF4_M004_0.6 new file mode 100644 index 0000000..b38d6af --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF4_M004_0.6 @@ -0,0 +1,11 @@ +// +NA CELF4_M004_0.6 + A C G T +01 8.506 8.506 17.595 65.392 +02 1.305 1.305 77.658 19.733 +03 1.305 1.305 1.305 96.086 +04 1.305 1.305 76.458 20.933 +05 1.305 1.305 10.463 86.927 +06 1.305 1.305 66.68 30.711 +07 8.31 8.31 26.455 56.925 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF5_M157_0.6 b/resources/ATtRACT_hsa/motif_CELF5_M157_0.6 new file mode 100644 index 0000000..f850e66 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF5_M157_0.6 @@ -0,0 +1,11 @@ +// +NA CELF5_M157_0.6 + A C G T +01 8.396 8.396 8.396 74.811 +02 1.012 1.012 88.022 9.953 +03 1.012 1.012 1.012 96.963 +04 1.012 1.012 77.261 20.714 +05 1.012 1.012 9.611 88.364 +06 1.012 1.012 73.431 24.545 +07 5.717 5.717 22.884 65.683 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CELF6_M178_0.6 b/resources/ATtRACT_hsa/motif_CELF6_M178_0.6 new file mode 100644 index 0000000..6adca23 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CELF6_M178_0.6 @@ -0,0 +1,11 @@ +// +NA CELF6_M178_0.6 + A C G T +01 6.033 6.033 6.033 81.902 +02 1.304 1.304 96.088 1.304 +03 1.304 1.304 1.304 96.088 +04 1.304 1.304 85.839 11.553 +05 20.254 1.304 40.063 38.379 +06 1.304 1.304 47.825 49.566 +07 6.027 6.027 73.175 14.771 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CMTR1_427 b/resources/ATtRACT_hsa/motif_CMTR1_427 new file mode 100644 index 0000000..d1f2733 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CMTR1_427 @@ -0,0 +1,8 @@ +// +NA CMTR1_427 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CNOT4_M147_0.6 b/resources/ATtRACT_hsa/motif_CNOT4_M147_0.6 new file mode 100644 index 0000000..34196f9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CNOT4_M147_0.6 @@ -0,0 +1,11 @@ +// +NA CNOT4_M147_0.6 + A C G T +01 2.893 16.888 77.326 2.893 +02 98.456 0.515 0.515 0.515 +03 0.515 91.451 7.52 0.515 +04 98.456 0.515 0.515 0.515 +05 0.515 18.417 80.554 0.515 +06 98.456 0.515 0.515 0.515 +07 30.101 18.413 20.97 30.516 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CPEB1_333 b/resources/ATtRACT_hsa/motif_CPEB1_333 new file mode 100644 index 0000000..91cb371 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CPEB1_333 @@ -0,0 +1,9 @@ +// +NA CPEB1_333 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CPEB2_M012_0.6 b/resources/ATtRACT_hsa/motif_CPEB2_M012_0.6 new file mode 100644 index 0000000..1c1edd2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CPEB2_M012_0.6 @@ -0,0 +1,11 @@ +// +NA CPEB2_M012_0.6 + A C G T +01 3.288 79.609 3.288 13.815 +02 27.737 21.813 0.895 49.556 +03 10.426 9.617 0.895 79.062 +04 0.895 0.895 0.895 97.316 +05 0.895 0.895 0.895 97.316 +06 0.895 0.895 0.895 97.316 +07 3.271 3.271 21.438 72.021 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CPEB4_345 b/resources/ATtRACT_hsa/motif_CPEB4_345 new file mode 100644 index 0000000..d2dfd5a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CPEB4_345 @@ -0,0 +1,9 @@ +// +NA CPEB4_345 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CPEB4_M149_0.6 b/resources/ATtRACT_hsa/motif_CPEB4_M149_0.6 new file mode 100644 index 0000000..3c56225 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CPEB4_M149_0.6 @@ -0,0 +1,11 @@ +// +NA CPEB4_M149_0.6 + A C G T +01 16.979 45.247 16.451 21.323 +02 9.693 9.199 0.658 80.45 +03 0.658 0.658 0.658 98.025 +04 0.658 0.658 0.658 98.025 +05 0.658 0.658 0.658 98.025 +06 0.658 0.658 9.057 89.627 +07 3.054 3.054 3.054 90.839 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CSTF2_112 b/resources/ATtRACT_hsa/motif_CSTF2_112 new file mode 100644 index 0000000..8ec2710 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CSTF2_112 @@ -0,0 +1,16 @@ +// +NA CSTF2_112 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CSTF2_162 b/resources/ATtRACT_hsa/motif_CSTF2_162 new file mode 100644 index 0000000..6c97826 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CSTF2_162 @@ -0,0 +1,15 @@ +// +NA CSTF2_162 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CSTF2_19 b/resources/ATtRACT_hsa/motif_CSTF2_19 new file mode 100644 index 0000000..7805cf7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CSTF2_19 @@ -0,0 +1,12 @@ +// +NA CSTF2_19 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_CSTF2_60 b/resources/ATtRACT_hsa/motif_CSTF2_60 new file mode 100644 index 0000000..fd406c4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_CSTF2_60 @@ -0,0 +1,14 @@ +// +NA CSTF2_60 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DAZAP1_593 b/resources/ATtRACT_hsa/motif_DAZAP1_593 new file mode 100644 index 0000000..9ca4122 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DAZAP1_593 @@ -0,0 +1,9 @@ +// +NA DAZAP1_593 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DAZAP1_594 b/resources/ATtRACT_hsa/motif_DAZAP1_594 new file mode 100644 index 0000000..76b41ab --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DAZAP1_594 @@ -0,0 +1,11 @@ +// +NA DAZAP1_594 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DAZAP1_595 b/resources/ATtRACT_hsa/motif_DAZAP1_595 new file mode 100644 index 0000000..553b988 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DAZAP1_595 @@ -0,0 +1,11 @@ +// +NA DAZAP1_595 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DAZAP1_596 b/resources/ATtRACT_hsa/motif_DAZAP1_596 new file mode 100644 index 0000000..922b3e4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DAZAP1_596 @@ -0,0 +1,11 @@ +// +NA DAZAP1_596 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DAZAP1_597 b/resources/ATtRACT_hsa/motif_DAZAP1_597 new file mode 100644 index 0000000..b04f2b0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DAZAP1_597 @@ -0,0 +1,10 @@ +// +NA DAZAP1_597 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DAZAP1_598 b/resources/ATtRACT_hsa/motif_DAZAP1_598 new file mode 100644 index 0000000..72c85f4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DAZAP1_598 @@ -0,0 +1,10 @@ +// +NA DAZAP1_598 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DAZAP1_599 b/resources/ATtRACT_hsa/motif_DAZAP1_599 new file mode 100644 index 0000000..f71fba6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DAZAP1_599 @@ -0,0 +1,10 @@ +// +NA DAZAP1_599 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DAZAP1_600 b/resources/ATtRACT_hsa/motif_DAZAP1_600 new file mode 100644 index 0000000..1ea5fe0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DAZAP1_600 @@ -0,0 +1,10 @@ +// +NA DAZAP1_600 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DAZAP1_M013_0.6 b/resources/ATtRACT_hsa/motif_DAZAP1_M013_0.6 new file mode 100644 index 0000000..cd99574 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DAZAP1_M013_0.6 @@ -0,0 +1,11 @@ +// +NA DAZAP1_M013_0.6 + A C G T +01 1.202 1.202 1.202 96.394 +02 96.394 1.202 1.202 1.202 +03 10.164 1.202 87.431 1.202 +04 11.753 1.202 67.05 19.994 +05 20.196 1.202 9.922 68.68 +06 68.68 1.202 9.791 20.327 +07 33.727 5.916 54.442 5.916 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DDX19B_332 b/resources/ATtRACT_hsa/motif_DDX19B_332 new file mode 100644 index 0000000..53c22b3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DDX19B_332 @@ -0,0 +1,11 @@ +// +NA DDX19B_332 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DDX19B_554 b/resources/ATtRACT_hsa/motif_DDX19B_554 new file mode 100644 index 0000000..1e691e7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DDX19B_554 @@ -0,0 +1,10 @@ +// +NA DDX19B_554 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DDX58_381 b/resources/ATtRACT_hsa/motif_DDX58_381 new file mode 100644 index 0000000..a6e9ed7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DDX58_381 @@ -0,0 +1,8 @@ +// +NA DDX58_381 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DDX58_473 b/resources/ATtRACT_hsa/motif_DDX58_473 new file mode 100644 index 0000000..d93387e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DDX58_473 @@ -0,0 +1,10 @@ +// +NA DDX58_473 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DDX58_511 b/resources/ATtRACT_hsa/motif_DDX58_511 new file mode 100644 index 0000000..9151f93 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DDX58_511 @@ -0,0 +1,9 @@ +// +NA DDX58_511 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DHX58_422 b/resources/ATtRACT_hsa/motif_DHX58_422 new file mode 100644 index 0000000..5a6e563 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DHX58_422 @@ -0,0 +1,9 @@ +// +NA DHX58_422 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DHX9_377 b/resources/ATtRACT_hsa/motif_DHX9_377 new file mode 100644 index 0000000..fb13a31 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DHX9_377 @@ -0,0 +1,8 @@ +// +NA DHX9_377 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DHX9_435 b/resources/ATtRACT_hsa/motif_DHX9_435 new file mode 100644 index 0000000..49b94c4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DHX9_435 @@ -0,0 +1,9 @@ +// +NA DHX9_435 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_DHX9_458 b/resources/ATtRACT_hsa/motif_DHX9_458 new file mode 100644 index 0000000..ef0d676 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_DHX9_458 @@ -0,0 +1,8 @@ +// +NA DHX9_458 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_EIF4A3_407 b/resources/ATtRACT_hsa/motif_EIF4A3_407 new file mode 100644 index 0000000..9d95ae0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_EIF4A3_407 @@ -0,0 +1,10 @@ +// +NA EIF4A3_407 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_EIF4A3_426 b/resources/ATtRACT_hsa/motif_EIF4A3_426 new file mode 100644 index 0000000..84914ba --- /dev/null +++ b/resources/ATtRACT_hsa/motif_EIF4A3_426 @@ -0,0 +1,10 @@ +// +NA EIF4A3_426 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_EIF4A3_432 b/resources/ATtRACT_hsa/motif_EIF4A3_432 new file mode 100644 index 0000000..fc42966 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_EIF4A3_432 @@ -0,0 +1,10 @@ +// +NA EIF4A3_432 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_EIF4B_M290_0.6 b/resources/ATtRACT_hsa/motif_EIF4B_M290_0.6 new file mode 100644 index 0000000..ad07dbb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_EIF4B_M290_0.6 @@ -0,0 +1,11 @@ +// +NA EIF4B_M290_0.6 + A C G T +01 7.692 15.385 53.846 23.077 +02 1.0 23.077 1.0 74.923 +03 23.077 30.769 1.0 45.154 +04 1.0 1.0 97.0 1.0 +05 1.0 1.0 97.0 1.0 +06 90.308 7.692 1.0 1.0 +07 68.231 23.077 1.0 7.692 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_1103 b/resources/ATtRACT_hsa/motif_ELAVL1_1103 new file mode 100644 index 0000000..e077721 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_1103 @@ -0,0 +1,9 @@ +// +NA ELAVL1_1103 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_1104 b/resources/ATtRACT_hsa/motif_ELAVL1_1104 new file mode 100644 index 0000000..543a807 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_1104 @@ -0,0 +1,9 @@ +// +NA ELAVL1_1104 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_1105 b/resources/ATtRACT_hsa/motif_ELAVL1_1105 new file mode 100644 index 0000000..1498a42 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_1105 @@ -0,0 +1,13 @@ +// +NA ELAVL1_1105 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_1106 b/resources/ATtRACT_hsa/motif_ELAVL1_1106 new file mode 100644 index 0000000..a96e1ea --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_1106 @@ -0,0 +1,11 @@ +// +NA ELAVL1_1106 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_1107 b/resources/ATtRACT_hsa/motif_ELAVL1_1107 new file mode 100644 index 0000000..a13a652 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_1107 @@ -0,0 +1,11 @@ +// +NA ELAVL1_1107 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_1108 b/resources/ATtRACT_hsa/motif_ELAVL1_1108 new file mode 100644 index 0000000..3392cae --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_1108 @@ -0,0 +1,11 @@ +// +NA ELAVL1_1108 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_161 b/resources/ATtRACT_hsa/motif_ELAVL1_161 new file mode 100644 index 0000000..1728951 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_161 @@ -0,0 +1,16 @@ +// +NA ELAVL1_161 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_164 b/resources/ATtRACT_hsa/motif_ELAVL1_164 new file mode 100644 index 0000000..cf5b5b8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_164 @@ -0,0 +1,16 @@ +// +NA ELAVL1_164 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_367 b/resources/ATtRACT_hsa/motif_ELAVL1_367 new file mode 100644 index 0000000..dccf9b6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_367 @@ -0,0 +1,8 @@ +// +NA ELAVL1_367 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_476 b/resources/ATtRACT_hsa/motif_ELAVL1_476 new file mode 100644 index 0000000..6486cf6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_476 @@ -0,0 +1,9 @@ +// +NA ELAVL1_476 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_512 b/resources/ATtRACT_hsa/motif_ELAVL1_512 new file mode 100644 index 0000000..d875e3f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_512 @@ -0,0 +1,8 @@ +// +NA ELAVL1_512 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_84 b/resources/ATtRACT_hsa/motif_ELAVL1_84 new file mode 100644 index 0000000..ca786f6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_84 @@ -0,0 +1,15 @@ +// +NA ELAVL1_84 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_M031_0.6 b/resources/ATtRACT_hsa/motif_ELAVL1_M031_0.6 new file mode 100644 index 0000000..5dc134d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_M031_0.6 @@ -0,0 +1,11 @@ +// +NA ELAVL1_M031_0.6 + A C G T +01 0.648 0.648 0.648 98.056 +02 0.648 0.648 0.648 98.056 +03 53.644 0.648 17.727 27.981 +04 8.792 0.648 18.565 71.995 +05 0.648 0.648 0.648 98.056 +06 0.648 0.648 0.648 98.056 +07 5.695 14.373 14.365 65.567 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_M108_0.6 b/resources/ATtRACT_hsa/motif_ELAVL1_M108_0.6 new file mode 100644 index 0000000..ec411e3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_M108_0.6 @@ -0,0 +1,11 @@ +// +NA ELAVL1_M108_0.6 + A C G T +01 5.832 5.832 5.832 82.503 +02 5.832 5.832 5.832 82.503 +03 22.836 1.106 9.849 66.208 +04 11.657 1.106 76.906 10.33 +05 1.106 1.106 19.597 78.19 +06 1.106 1.106 1.106 96.681 +07 5.788 5.788 5.788 82.637 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_M112_0.6 b/resources/ATtRACT_hsa/motif_ELAVL1_M112_0.6 new file mode 100644 index 0000000..64a7c03 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_M112_0.6 @@ -0,0 +1,11 @@ +// +NA ELAVL1_M112_0.6 + A C G T +01 3.32 3.32 3.32 90.039 +02 3.32 3.32 3.32 90.039 +03 14.011 0.926 9.709 75.354 +04 18.991 9.915 61.303 9.791 +05 0.926 0.926 29.289 68.858 +06 0.926 9.791 0.926 88.356 +07 5.736 5.736 14.593 73.934 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_M127_0.6 b/resources/ATtRACT_hsa/motif_ELAVL1_M127_0.6 new file mode 100644 index 0000000..1354ac7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_M127_0.6 @@ -0,0 +1,11 @@ +// +NA ELAVL1_M127_0.6 + A C G T +01 21.076 3.259 3.259 72.406 +02 0.857 0.857 0.857 97.429 +03 13.295 0.857 58.414 27.434 +04 29.366 0.857 59.629 10.147 +05 0.857 0.857 10.099 88.187 +06 0.857 0.857 0.857 97.429 +07 3.261 3.261 3.261 90.216 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_M232_0.6 b/resources/ATtRACT_hsa/motif_ELAVL1_M232_0.6 new file mode 100644 index 0000000..6a317c5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_M232_0.6 @@ -0,0 +1,11 @@ +// +NA ELAVL1_M232_0.6 + A C G T +01 0.989 11.367 10.729 76.915 +02 0.989 0.989 0.989 97.033 +03 10.724 0.989 0.989 87.298 +04 9.611 0.989 9.646 79.754 +05 0.989 0.989 9.505 88.517 +06 0.989 10.059 9.505 79.447 +07 0.989 10.346 19.541 69.124 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL1_s101 b/resources/ATtRACT_hsa/motif_ELAVL1_s101 new file mode 100644 index 0000000..e1f5c54 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL1_s101 @@ -0,0 +1,11 @@ +// +NA ELAVL1_s101 + A C G T +01 0.198 0.198 0.198 99.405 +02 0.198 0.198 0.198 99.405 +03 20.04 0.198 20.04 59.722 +04 20.04 0.198 20.04 59.722 +05 0.198 0.198 0.198 99.405 +06 0.198 0.198 0.198 99.405 +07 0.198 0.198 0.198 99.405 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL2_1093 b/resources/ATtRACT_hsa/motif_ELAVL2_1093 new file mode 100644 index 0000000..083ea36 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL2_1093 @@ -0,0 +1,15 @@ +// +NA ELAVL2_1093 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL2_96 b/resources/ATtRACT_hsa/motif_ELAVL2_96 new file mode 100644 index 0000000..37fa6c2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL2_96 @@ -0,0 +1,8 @@ +// +NA ELAVL2_96 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL2_M329_0.6 b/resources/ATtRACT_hsa/motif_ELAVL2_M329_0.6 new file mode 100644 index 0000000..ae0a3cd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL2_M329_0.6 @@ -0,0 +1,13 @@ +// +NA ELAVL2_M329_0.6 + A C G T +01 25.0 1.0 1.0 73.0 +02 1.0 5.0 1.0 93.0 +03 1.0 1.0 1.0 97.0 +04 1.0 5.0 5.0 89.0 +05 88.0 1.0 10.0 1.0 +06 1.0 1.0 5.0 93.0 +07 20.0 1.0 1.0 78.0 +08 1.0 5.0 10.0 84.0 +09 35.0 1.0 5.0 59.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL2_s0 b/resources/ATtRACT_hsa/motif_ELAVL2_s0 new file mode 100644 index 0000000..f5ae0f8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL2_s0 @@ -0,0 +1,13 @@ +// +NA ELAVL2_s0 + A C G T +01 20.008 8.027 0.04 71.925 +02 4.034 4.034 0.04 91.893 +03 8.027 0.04 4.034 87.899 +04 8.027 4.034 4.034 83.906 +05 91.893 4.034 0.04 4.034 +06 12.021 8.027 4.034 75.919 +07 12.021 0.04 8.027 79.912 +08 0.04 4.034 12.021 83.906 +09 20.008 0.04 8.027 71.925 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL2_s1 b/resources/ATtRACT_hsa/motif_ELAVL2_s1 new file mode 100644 index 0000000..2350d98 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL2_s1 @@ -0,0 +1,9 @@ +// +NA ELAVL2_s1 + A C G T +01 42.756 28.551 28.551 0.142 +02 0.142 0.142 0.142 99.574 +03 0.142 0.142 0.142 99.574 +04 0.142 0.142 0.142 99.574 +05 42.756 42.756 14.347 0.142 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL2_s2 b/resources/ATtRACT_hsa/motif_ELAVL2_s2 new file mode 100644 index 0000000..0f9aa5c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL2_s2 @@ -0,0 +1,10 @@ +// +NA ELAVL2_s2 + A C G T +01 25.0 49.752 25.0 0.248 +02 0.248 0.248 0.248 99.257 +03 0.248 0.248 0.248 99.257 +04 0.248 0.248 0.248 99.257 +05 0.248 0.248 0.248 99.257 +06 25.0 49.752 0.248 25.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL2_s3 b/resources/ATtRACT_hsa/motif_ELAVL2_s3 new file mode 100644 index 0000000..de46fef --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL2_s3 @@ -0,0 +1,11 @@ +// +NA ELAVL2_s3 + A C G T +01 39.881 39.881 20.04 0.198 +02 0.198 0.198 0.198 99.405 +03 0.198 0.198 0.198 99.405 +04 0.198 0.198 0.198 99.405 +05 0.198 0.198 0.198 99.405 +06 0.198 0.198 0.198 99.405 +07 59.722 20.04 20.04 0.198 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL3_1094 b/resources/ATtRACT_hsa/motif_ELAVL3_1094 new file mode 100644 index 0000000..1947912 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL3_1094 @@ -0,0 +1,11 @@ +// +NA ELAVL3_1094 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL3_119 b/resources/ATtRACT_hsa/motif_ELAVL3_119 new file mode 100644 index 0000000..2fb5a22 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL3_119 @@ -0,0 +1,14 @@ +// +NA ELAVL3_119 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL3_47 b/resources/ATtRACT_hsa/motif_ELAVL3_47 new file mode 100644 index 0000000..cdcbecb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL3_47 @@ -0,0 +1,14 @@ +// +NA ELAVL3_47 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL3_85 b/resources/ATtRACT_hsa/motif_ELAVL3_85 new file mode 100644 index 0000000..39fe05a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL3_85 @@ -0,0 +1,9 @@ +// +NA ELAVL3_85 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_1095 b/resources/ATtRACT_hsa/motif_ELAVL4_1095 new file mode 100644 index 0000000..f7611b0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_1095 @@ -0,0 +1,15 @@ +// +NA ELAVL4_1095 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_1096 b/resources/ATtRACT_hsa/motif_ELAVL4_1096 new file mode 100644 index 0000000..dd2332e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_1096 @@ -0,0 +1,11 @@ +// +NA ELAVL4_1096 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_1097 b/resources/ATtRACT_hsa/motif_ELAVL4_1097 new file mode 100644 index 0000000..5f8baf7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_1097 @@ -0,0 +1,14 @@ +// +NA ELAVL4_1097 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_1098 b/resources/ATtRACT_hsa/motif_ELAVL4_1098 new file mode 100644 index 0000000..3b57e7a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_1098 @@ -0,0 +1,11 @@ +// +NA ELAVL4_1098 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_1099 b/resources/ATtRACT_hsa/motif_ELAVL4_1099 new file mode 100644 index 0000000..e9a4c3c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_1099 @@ -0,0 +1,11 @@ +// +NA ELAVL4_1099 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_1100 b/resources/ATtRACT_hsa/motif_ELAVL4_1100 new file mode 100644 index 0000000..b48ebea --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_1100 @@ -0,0 +1,16 @@ +// +NA ELAVL4_1100 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_1101 b/resources/ATtRACT_hsa/motif_ELAVL4_1101 new file mode 100644 index 0000000..512deb7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_1101 @@ -0,0 +1,16 @@ +// +NA ELAVL4_1101 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_1102 b/resources/ATtRACT_hsa/motif_ELAVL4_1102 new file mode 100644 index 0000000..d02c6af --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_1102 @@ -0,0 +1,15 @@ +// +NA ELAVL4_1102 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_353 b/resources/ATtRACT_hsa/motif_ELAVL4_353 new file mode 100644 index 0000000..63f2ceb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_353 @@ -0,0 +1,14 @@ +// +NA ELAVL4_353 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_424 b/resources/ATtRACT_hsa/motif_ELAVL4_424 new file mode 100644 index 0000000..44519eb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_424 @@ -0,0 +1,8 @@ +// +NA ELAVL4_424 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ELAVL4_s93 b/resources/ATtRACT_hsa/motif_ELAVL4_s93 new file mode 100644 index 0000000..d40e73e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ELAVL4_s93 @@ -0,0 +1,16 @@ +// +NA ELAVL4_s93 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 97.115 0.962 0.962 0.962 +11 97.115 0.962 0.962 0.962 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ENOX1_M140_0.6 b/resources/ATtRACT_hsa/motif_ENOX1_M140_0.6 new file mode 100644 index 0000000..66885c3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ENOX1_M140_0.6 @@ -0,0 +1,11 @@ +// +NA ENOX1_M140_0.6 + A C G T +01 34.351 43.794 6.667 15.188 +02 58.489 14.525 22.654 4.332 +03 1.96 11.992 66.055 19.993 +04 94.121 1.96 1.96 1.96 +05 1.96 85.315 1.96 10.766 +06 84.912 1.96 11.168 1.96 +07 6.534 6.534 80.397 6.534 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ERI1_412 b/resources/ATtRACT_hsa/motif_ERI1_412 new file mode 100644 index 0000000..5e62a94 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ERI1_412 @@ -0,0 +1,8 @@ +// +NA ERI1_412 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ERI1_517 b/resources/ATtRACT_hsa/motif_ERI1_517 new file mode 100644 index 0000000..1d07203 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ERI1_517 @@ -0,0 +1,11 @@ +// +NA ERI1_517 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ESRP1_601 b/resources/ATtRACT_hsa/motif_ESRP1_601 new file mode 100644 index 0000000..0141f7b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ESRP1_601 @@ -0,0 +1,10 @@ +// +NA ESRP1_601 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ESRP2_M141_0.6 b/resources/ATtRACT_hsa/motif_ESRP2_M141_0.6 new file mode 100644 index 0000000..a326f28 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ESRP2_M141_0.6 @@ -0,0 +1,11 @@ +// +NA ESRP2_M141_0.6 + A C G T +01 8.511 8.511 8.511 74.466 +02 3.729 3.729 88.812 3.729 +03 1.288 1.288 96.136 1.288 +04 1.288 1.288 96.136 1.288 +05 21.948 3.674 70.703 3.674 +06 71.646 3.674 21.005 3.674 +07 20.619 10.735 19.718 48.928 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_F2_366 b/resources/ATtRACT_hsa/motif_F2_366 new file mode 100644 index 0000000..d36ada2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_F2_366 @@ -0,0 +1,8 @@ +// +NA F2_366 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_450 b/resources/ATtRACT_hsa/motif_FMR1_450 new file mode 100644 index 0000000..e2c33af --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_450 @@ -0,0 +1,9 @@ +// +NA FMR1_450 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_604 b/resources/ATtRACT_hsa/motif_FMR1_604 new file mode 100644 index 0000000..e895d7e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_604 @@ -0,0 +1,11 @@ +// +NA FMR1_604 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_605 b/resources/ATtRACT_hsa/motif_FMR1_605 new file mode 100644 index 0000000..275f7b7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_605 @@ -0,0 +1,11 @@ +// +NA FMR1_605 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_606 b/resources/ATtRACT_hsa/motif_FMR1_606 new file mode 100644 index 0000000..b3c36eb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_606 @@ -0,0 +1,11 @@ +// +NA FMR1_606 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_607 b/resources/ATtRACT_hsa/motif_FMR1_607 new file mode 100644 index 0000000..3d13b11 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_607 @@ -0,0 +1,11 @@ +// +NA FMR1_607 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_608 b/resources/ATtRACT_hsa/motif_FMR1_608 new file mode 100644 index 0000000..263cca0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_608 @@ -0,0 +1,11 @@ +// +NA FMR1_608 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_609 b/resources/ATtRACT_hsa/motif_FMR1_609 new file mode 100644 index 0000000..89a0547 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_609 @@ -0,0 +1,11 @@ +// +NA FMR1_609 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_610 b/resources/ATtRACT_hsa/motif_FMR1_610 new file mode 100644 index 0000000..4470ac0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_610 @@ -0,0 +1,11 @@ +// +NA FMR1_610 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_611 b/resources/ATtRACT_hsa/motif_FMR1_611 new file mode 100644 index 0000000..f5718ec --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_611 @@ -0,0 +1,11 @@ +// +NA FMR1_611 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_78 b/resources/ATtRACT_hsa/motif_FMR1_78 new file mode 100644 index 0000000..8c8072c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_78 @@ -0,0 +1,16 @@ +// +NA FMR1_78 + A C G T +01 0.124 0.124 99.627 0.124 +02 0.124 0.124 99.627 0.124 +03 0.124 0.124 99.627 0.124 +04 0.124 99.627 0.124 0.124 +05 0.124 0.124 49.876 49.876 +06 99.627 0.124 0.124 0.124 +07 99.627 0.124 0.124 0.124 +08 0.124 0.124 99.627 0.124 +09 0.124 0.124 99.627 0.124 +10 99.627 0.124 0.124 0.124 +11 49.876 0.124 49.876 0.124 +12 0.124 0.124 49.876 49.876 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_91 b/resources/ATtRACT_hsa/motif_FMR1_91 new file mode 100644 index 0000000..8a8e89c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_91 @@ -0,0 +1,14 @@ +// +NA FMR1_91 + A C G T +01 0.248 0.248 49.752 49.752 +02 99.257 0.248 0.248 0.248 +03 0.248 0.248 99.257 0.248 +04 0.248 99.257 0.248 0.248 +05 0.248 0.248 99.257 0.248 +06 49.752 0.248 49.752 0.248 +07 0.248 99.257 0.248 0.248 +08 0.248 0.248 0.248 99.257 +09 0.248 0.248 99.257 0.248 +10 0.248 0.248 99.257 0.248 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_M016_0.6 b/resources/ATtRACT_hsa/motif_FMR1_M016_0.6 new file mode 100644 index 0000000..3ef71ce --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_M016_0.6 @@ -0,0 +1,11 @@ +// +NA FMR1_M016_0.6 + A C G T +01 11.087 11.087 57.623 20.203 +02 1.833 1.833 94.5 1.833 +03 94.5 1.833 1.833 1.833 +04 1.833 94.5 1.833 1.833 +05 76.621 1.833 19.712 1.833 +06 49.97 4.145 41.739 4.145 +07 13.374 4.145 78.335 4.145 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_s17 b/resources/ATtRACT_hsa/motif_FMR1_s17 new file mode 100644 index 0000000..cb6c2ef --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_s17 @@ -0,0 +1,14 @@ +// +NA FMR1_s17 + A C G T +01 14.347 0.142 28.551 56.96 +02 99.574 0.142 0.142 0.142 +03 0.142 0.142 99.574 0.142 +04 0.142 85.369 0.142 14.347 +05 14.347 0.142 85.369 0.142 +06 28.551 0.142 71.165 0.142 +07 0.142 99.574 0.142 0.142 +08 0.142 0.142 0.142 99.574 +09 0.142 0.142 99.574 0.142 +10 0.142 0.142 99.574 0.142 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FMR1_s18 b/resources/ATtRACT_hsa/motif_FMR1_s18 new file mode 100644 index 0000000..19abc23 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FMR1_s18 @@ -0,0 +1,16 @@ +// +NA FMR1_s18 + A C G T +01 0.071 0.071 99.786 0.071 +02 14.316 0.071 71.296 14.316 +03 7.194 0.071 92.664 0.071 +04 0.071 99.786 0.071 0.071 +05 7.194 0.071 49.929 42.806 +06 78.419 0.071 14.316 7.194 +07 71.296 21.439 0.071 7.194 +08 0.071 0.071 78.419 21.439 +09 0.071 0.071 99.786 0.071 +10 57.051 7.194 35.684 0.071 +11 35.684 0.071 42.806 21.439 +12 0.071 21.439 35.684 42.806 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FUS_1058 b/resources/ATtRACT_hsa/motif_FUS_1058 new file mode 100644 index 0000000..f8ea7a5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FUS_1058 @@ -0,0 +1,11 @@ +// +NA FUS_1058 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FUS_1059 b/resources/ATtRACT_hsa/motif_FUS_1059 new file mode 100644 index 0000000..a0c2455 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FUS_1059 @@ -0,0 +1,11 @@ +// +NA FUS_1059 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FUS_1060 b/resources/ATtRACT_hsa/motif_FUS_1060 new file mode 100644 index 0000000..3c7d14e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FUS_1060 @@ -0,0 +1,11 @@ +// +NA FUS_1060 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FUS_1061 b/resources/ATtRACT_hsa/motif_FUS_1061 new file mode 100644 index 0000000..ffb3351 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FUS_1061 @@ -0,0 +1,11 @@ +// +NA FUS_1061 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FUS_M316_0.6 b/resources/ATtRACT_hsa/motif_FUS_M316_0.6 new file mode 100644 index 0000000..7ee14d4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FUS_M316_0.6 @@ -0,0 +1,8 @@ +// +NA FUS_M316_0.6 + A C G T +01 1.0 1.0 97.0 1.0 +02 1.0 1.0 97.0 1.0 +03 1.0 1.0 1.0 97.0 +04 1.0 1.0 97.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FUS_s31 b/resources/ATtRACT_hsa/motif_FUS_s31 new file mode 100644 index 0000000..d0a4e41 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FUS_s31 @@ -0,0 +1,10 @@ +// +NA FUS_s31 + A C G T +01 0.111 22.235 44.358 33.296 +02 0.111 0.111 99.668 0.111 +03 0.111 0.111 99.668 0.111 +04 0.111 0.111 0.111 99.668 +05 0.111 0.111 99.668 0.111 +06 33.296 11.173 33.296 22.235 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FXR1_M152_0.6 b/resources/ATtRACT_hsa/motif_FXR1_M152_0.6 new file mode 100644 index 0000000..4992ab3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FXR1_M152_0.6 @@ -0,0 +1,12 @@ +// +NA FXR1_M152_0.6 + A C G T +01 59.462 13.513 13.513 13.513 +02 88.347 3.884 3.884 3.884 +03 1.56 37.785 1.56 59.094 +04 1.56 1.56 95.319 1.56 +05 86.2 1.56 10.679 1.56 +06 10.679 86.2 1.56 1.56 +07 58.691 1.56 38.188 1.56 +08 60.833 13.056 13.056 13.056 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_FXR2_M020_0.6 b/resources/ATtRACT_hsa/motif_FXR2_M020_0.6 new file mode 100644 index 0000000..e5b818c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_FXR2_M020_0.6 @@ -0,0 +1,11 @@ +// +NA FXR2_M020_0.6 + A C G T +01 17.819 8.727 55.996 17.458 +02 1.871 1.871 94.387 1.871 +03 94.387 1.871 1.871 1.871 +04 1.871 94.387 1.871 1.871 +05 39.003 1.871 57.255 1.871 +06 46.765 1.871 49.493 1.871 +07 23.617 4.181 68.022 4.181 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_G3BP1_33 b/resources/ATtRACT_hsa/motif_G3BP1_33 new file mode 100644 index 0000000..19fde10 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_G3BP1_33 @@ -0,0 +1,16 @@ +// +NA G3BP1_33 + A C G T +01 99.953 0.016 0.016 0.016 +02 0.016 99.953 0.016 0.016 +03 0.016 99.953 0.016 0.016 +04 0.016 99.953 0.016 0.016 +05 49.984 49.984 0.016 0.016 +06 0.016 49.984 0.016 49.984 +07 49.984 49.984 0.016 0.016 +08 0.016 49.984 49.984 0.016 +09 0.016 0.016 99.953 0.016 +10 0.016 99.953 0.016 0.016 +11 49.984 49.984 0.016 0.016 +12 0.016 49.984 49.984 0.016 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_G3BP2_M021_0.6 b/resources/ATtRACT_hsa/motif_G3BP2_M021_0.6 new file mode 100644 index 0000000..7a730a8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_G3BP2_M021_0.6 @@ -0,0 +1,11 @@ +// +NA G3BP2_M021_0.6 + A C G T +01 74.237 5.818 5.818 14.128 +02 3.451 3.451 89.648 3.451 +03 1.093 1.093 96.721 1.093 +04 96.721 1.093 1.093 1.093 +05 1.093 1.093 1.093 96.721 +06 31.091 1.093 48.063 19.752 +07 60.819 1.093 28.11 9.979 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_GRSF1_46 b/resources/ATtRACT_hsa/motif_GRSF1_46 new file mode 100644 index 0000000..7790ef4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_GRSF1_46 @@ -0,0 +1,9 @@ +// +NA GRSF1_46 + A C G T +01 33.296 0.111 33.296 33.296 +02 0.111 0.111 99.668 0.111 +03 0.111 0.111 99.668 0.111 +04 0.111 0.111 99.668 0.111 +05 33.296 0.111 33.296 33.296 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA0_635 b/resources/ATtRACT_hsa/motif_HNRNPA0_635 new file mode 100644 index 0000000..95cb0e2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA0_635 @@ -0,0 +1,9 @@ +// +NA HNRNPA0_635 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA0_636 b/resources/ATtRACT_hsa/motif_HNRNPA0_636 new file mode 100644 index 0000000..66906f6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA0_636 @@ -0,0 +1,10 @@ +// +NA HNRNPA0_636 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA0_637 b/resources/ATtRACT_hsa/motif_HNRNPA0_637 new file mode 100644 index 0000000..04e6333 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA0_637 @@ -0,0 +1,10 @@ +// +NA HNRNPA0_637 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA0_638 b/resources/ATtRACT_hsa/motif_HNRNPA0_638 new file mode 100644 index 0000000..ac8fe9a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA0_638 @@ -0,0 +1,10 @@ +// +NA HNRNPA0_638 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1L2_M023_0.6 b/resources/ATtRACT_hsa/motif_HNRNPA1L2_M023_0.6 new file mode 100644 index 0000000..c80136e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1L2_M023_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPA1L2_M023_0.6 + A C G T +01 17.797 8.613 26.726 46.864 +02 1.31 1.31 1.31 96.07 +03 96.07 1.31 1.31 1.31 +04 1.31 1.31 96.07 1.31 +05 1.31 1.31 96.07 1.31 +06 3.647 3.647 79.905 12.8 +07 45.298 8.278 8.278 38.146 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_1306 b/resources/ATtRACT_hsa/motif_HNRNPA1_1306 new file mode 100644 index 0000000..24bedb4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_1306 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_1306 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_1346 b/resources/ATtRACT_hsa/motif_HNRNPA1_1346 new file mode 100644 index 0000000..7118c46 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_1346 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_1346 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_1358 b/resources/ATtRACT_hsa/motif_HNRNPA1_1358 new file mode 100644 index 0000000..3f48f6b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_1358 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_1358 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_1366 b/resources/ATtRACT_hsa/motif_HNRNPA1_1366 new file mode 100644 index 0000000..48a50b1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_1366 @@ -0,0 +1,8 @@ +// +NA HNRNPA1_1366 + A C G T +01 0.9615384615379999 0.9615384615379999 0.9615384615379999 97.1153846154 +02 0.9615384615379999 0.9615384615379999 0.9615384615379999 97.1153846154 +03 97.1153846154 0.9615384615379999 0.9615384615379999 0.9615384615379999 +04 0.9615384615379999 0.9615384615379999 97.1153846154 0.9615384615379999 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_1397 b/resources/ATtRACT_hsa/motif_HNRNPA1_1397 new file mode 100644 index 0000000..418ffd2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_1397 @@ -0,0 +1,8 @@ +// +NA HNRNPA1_1397 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_183 b/resources/ATtRACT_hsa/motif_HNRNPA1_183 new file mode 100644 index 0000000..93133b0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_183 @@ -0,0 +1,15 @@ +// +NA HNRNPA1_183 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_43 b/resources/ATtRACT_hsa/motif_HNRNPA1_43 new file mode 100644 index 0000000..acdc735 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_43 @@ -0,0 +1,16 @@ +// +NA HNRNPA1_43 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +12 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_52 b/resources/ATtRACT_hsa/motif_HNRNPA1_52 new file mode 100644 index 0000000..11333b9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_52 @@ -0,0 +1,15 @@ +// +NA HNRNPA1_52 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_639 b/resources/ATtRACT_hsa/motif_HNRNPA1_639 new file mode 100644 index 0000000..bf74b64 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_639 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_639 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_640 b/resources/ATtRACT_hsa/motif_HNRNPA1_640 new file mode 100644 index 0000000..66920ab --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_640 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_640 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_641 b/resources/ATtRACT_hsa/motif_HNRNPA1_641 new file mode 100644 index 0000000..943ae2f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_641 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_641 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_642 b/resources/ATtRACT_hsa/motif_HNRNPA1_642 new file mode 100644 index 0000000..6c32978 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_642 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_642 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_643 b/resources/ATtRACT_hsa/motif_HNRNPA1_643 new file mode 100644 index 0000000..171ce54 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_643 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_643 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_644 b/resources/ATtRACT_hsa/motif_HNRNPA1_644 new file mode 100644 index 0000000..a3debba --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_644 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_644 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_645 b/resources/ATtRACT_hsa/motif_HNRNPA1_645 new file mode 100644 index 0000000..f56e40c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_645 @@ -0,0 +1,11 @@ +// +NA HNRNPA1_645 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_646 b/resources/ATtRACT_hsa/motif_HNRNPA1_646 new file mode 100644 index 0000000..f7883e2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_646 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_646 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_647 b/resources/ATtRACT_hsa/motif_HNRNPA1_647 new file mode 100644 index 0000000..9f8b53d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_647 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_647 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_648 b/resources/ATtRACT_hsa/motif_HNRNPA1_648 new file mode 100644 index 0000000..ee49056 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_648 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_648 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_649 b/resources/ATtRACT_hsa/motif_HNRNPA1_649 new file mode 100644 index 0000000..218c9bf --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_649 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_649 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_650 b/resources/ATtRACT_hsa/motif_HNRNPA1_650 new file mode 100644 index 0000000..06a2a4b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_650 @@ -0,0 +1,9 @@ +// +NA HNRNPA1_650 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_651 b/resources/ATtRACT_hsa/motif_HNRNPA1_651 new file mode 100644 index 0000000..76dff42 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_651 @@ -0,0 +1,9 @@ +// +NA HNRNPA1_651 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_652 b/resources/ATtRACT_hsa/motif_HNRNPA1_652 new file mode 100644 index 0000000..805e0e3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_652 @@ -0,0 +1,9 @@ +// +NA HNRNPA1_652 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_653 b/resources/ATtRACT_hsa/motif_HNRNPA1_653 new file mode 100644 index 0000000..2b37c79 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_653 @@ -0,0 +1,11 @@ +// +NA HNRNPA1_653 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_654 b/resources/ATtRACT_hsa/motif_HNRNPA1_654 new file mode 100644 index 0000000..5161547 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_654 @@ -0,0 +1,9 @@ +// +NA HNRNPA1_654 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_655 b/resources/ATtRACT_hsa/motif_HNRNPA1_655 new file mode 100644 index 0000000..85cb4dd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_655 @@ -0,0 +1,12 @@ +// +NA HNRNPA1_655 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_656 b/resources/ATtRACT_hsa/motif_HNRNPA1_656 new file mode 100644 index 0000000..32d8f20 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_656 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_656 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_657 b/resources/ATtRACT_hsa/motif_HNRNPA1_657 new file mode 100644 index 0000000..b124e48 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_657 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_657 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_658 b/resources/ATtRACT_hsa/motif_HNRNPA1_658 new file mode 100644 index 0000000..a43902c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_658 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_658 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_659 b/resources/ATtRACT_hsa/motif_HNRNPA1_659 new file mode 100644 index 0000000..90963da --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_659 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_659 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_660 b/resources/ATtRACT_hsa/motif_HNRNPA1_660 new file mode 100644 index 0000000..1e2322a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_660 @@ -0,0 +1,12 @@ +// +NA HNRNPA1_660 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_661 b/resources/ATtRACT_hsa/motif_HNRNPA1_661 new file mode 100644 index 0000000..de3668d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_661 @@ -0,0 +1,9 @@ +// +NA HNRNPA1_661 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_662 b/resources/ATtRACT_hsa/motif_HNRNPA1_662 new file mode 100644 index 0000000..1adb365 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_662 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_662 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_663 b/resources/ATtRACT_hsa/motif_HNRNPA1_663 new file mode 100644 index 0000000..abfd3ba --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_663 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_663 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_664 b/resources/ATtRACT_hsa/motif_HNRNPA1_664 new file mode 100644 index 0000000..a43d018 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_664 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_664 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_665 b/resources/ATtRACT_hsa/motif_HNRNPA1_665 new file mode 100644 index 0000000..5b449ef --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_665 @@ -0,0 +1,9 @@ +// +NA HNRNPA1_665 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_673 b/resources/ATtRACT_hsa/motif_HNRNPA1_673 new file mode 100644 index 0000000..956ef76 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_673 @@ -0,0 +1,11 @@ +// +NA HNRNPA1_673 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_674 b/resources/ATtRACT_hsa/motif_HNRNPA1_674 new file mode 100644 index 0000000..5fd02ef --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_674 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_674 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_675 b/resources/ATtRACT_hsa/motif_HNRNPA1_675 new file mode 100644 index 0000000..80833c4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_675 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_675 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_676 b/resources/ATtRACT_hsa/motif_HNRNPA1_676 new file mode 100644 index 0000000..04fd0e0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_676 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_676 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_677 b/resources/ATtRACT_hsa/motif_HNRNPA1_677 new file mode 100644 index 0000000..6323324 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_677 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_677 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_678 b/resources/ATtRACT_hsa/motif_HNRNPA1_678 new file mode 100644 index 0000000..7347f0f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_678 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_678 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_679 b/resources/ATtRACT_hsa/motif_HNRNPA1_679 new file mode 100644 index 0000000..c2da90a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_679 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_679 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_680 b/resources/ATtRACT_hsa/motif_HNRNPA1_680 new file mode 100644 index 0000000..bf73088 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_680 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_680 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_681 b/resources/ATtRACT_hsa/motif_HNRNPA1_681 new file mode 100644 index 0000000..cc0a32d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_681 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_681 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_682 b/resources/ATtRACT_hsa/motif_HNRNPA1_682 new file mode 100644 index 0000000..9b43b02 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_682 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_682 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_683 b/resources/ATtRACT_hsa/motif_HNRNPA1_683 new file mode 100644 index 0000000..07dfdcd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_683 @@ -0,0 +1,11 @@ +// +NA HNRNPA1_683 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_684 b/resources/ATtRACT_hsa/motif_HNRNPA1_684 new file mode 100644 index 0000000..61ed541 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_684 @@ -0,0 +1,11 @@ +// +NA HNRNPA1_684 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_685 b/resources/ATtRACT_hsa/motif_HNRNPA1_685 new file mode 100644 index 0000000..448c76f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_685 @@ -0,0 +1,11 @@ +// +NA HNRNPA1_685 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_686 b/resources/ATtRACT_hsa/motif_HNRNPA1_686 new file mode 100644 index 0000000..0c69eee --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_686 @@ -0,0 +1,11 @@ +// +NA HNRNPA1_686 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_687 b/resources/ATtRACT_hsa/motif_HNRNPA1_687 new file mode 100644 index 0000000..526bc1d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_687 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_687 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_688 b/resources/ATtRACT_hsa/motif_HNRNPA1_688 new file mode 100644 index 0000000..3852196 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_688 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_688 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 97.115 0.962 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_689 b/resources/ATtRACT_hsa/motif_HNRNPA1_689 new file mode 100644 index 0000000..a9d2b14 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_689 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_689 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_690 b/resources/ATtRACT_hsa/motif_HNRNPA1_690 new file mode 100644 index 0000000..92e2e78 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_690 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_690 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_691 b/resources/ATtRACT_hsa/motif_HNRNPA1_691 new file mode 100644 index 0000000..1f4fe8c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_691 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_691 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_692 b/resources/ATtRACT_hsa/motif_HNRNPA1_692 new file mode 100644 index 0000000..c67c92e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_692 @@ -0,0 +1,11 @@ +// +NA HNRNPA1_692 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_693 b/resources/ATtRACT_hsa/motif_HNRNPA1_693 new file mode 100644 index 0000000..fe2759c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_693 @@ -0,0 +1,14 @@ +// +NA HNRNPA1_693 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_694 b/resources/ATtRACT_hsa/motif_HNRNPA1_694 new file mode 100644 index 0000000..fbf4465 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_694 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_694 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_695 b/resources/ATtRACT_hsa/motif_HNRNPA1_695 new file mode 100644 index 0000000..6141155 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_695 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_695 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_696 b/resources/ATtRACT_hsa/motif_HNRNPA1_696 new file mode 100644 index 0000000..91b05ea --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_696 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_696 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_72 b/resources/ATtRACT_hsa/motif_HNRNPA1_72 new file mode 100644 index 0000000..ce5e729 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_72 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_72 + A C G T +01 0.49 0.49 0.49 98.529 +02 98.529 0.49 0.49 0.49 +03 0.49 0.49 98.529 0.49 +04 0.49 0.49 98.529 0.49 +05 0.49 0.49 98.529 0.49 +06 49.51 0.49 0.49 49.51 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_M022_0.6 b/resources/ATtRACT_hsa/motif_HNRNPA1_M022_0.6 new file mode 100644 index 0000000..5b95fae --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_M022_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPA1_M022_0.6 + A C G T +01 26.822 8.293 27.214 37.671 +02 0.961 0.961 0.961 97.118 +03 97.118 0.961 0.961 0.961 +04 0.961 0.961 97.118 0.961 +05 0.961 0.961 97.118 0.961 +06 0.961 0.961 87.768 10.31 +07 59.109 10.396 10.396 20.099 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_M271_0.6 b/resources/ATtRACT_hsa/motif_HNRNPA1_M271_0.6 new file mode 100644 index 0000000..d97b259 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_M271_0.6 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_M271_0.6 + A C G T +01 1.0 4.255 1.0 93.745 +02 97.0 1.0 1.0 1.0 +03 1.0 1.0 97.0 1.0 +04 2.128 1.0 95.872 1.0 +05 10.638 2.128 78.723 8.511 +06 53.319 1.0 1.0 44.681 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA1_s32 b/resources/ATtRACT_hsa/motif_HNRNPA1_s32 new file mode 100644 index 0000000..11b32f2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA1_s32 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_s32 + A C G T +01 0.124 12.562 0.124 87.189 +02 99.627 0.124 0.124 0.124 +03 0.124 0.124 99.627 0.124 +04 12.562 0.124 87.189 0.124 +05 25.0 12.562 49.876 12.562 +06 62.313 0.124 0.124 37.438 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_125 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_125 new file mode 100644 index 0000000..3cdb291 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_125 @@ -0,0 +1,15 @@ +// +NA HNRNPA2B1_125 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_697 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_697 new file mode 100644 index 0000000..5fdbd93 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_697 @@ -0,0 +1,14 @@ +// +NA HNRNPA2B1_697 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_698 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_698 new file mode 100644 index 0000000..e03a2d8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_698 @@ -0,0 +1,9 @@ +// +NA HNRNPA2B1_698 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_699 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_699 new file mode 100644 index 0000000..08f07c0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_699 @@ -0,0 +1,10 @@ +// +NA HNRNPA2B1_699 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_700 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_700 new file mode 100644 index 0000000..ed59264 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_700 @@ -0,0 +1,10 @@ +// +NA HNRNPA2B1_700 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_701 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_701 new file mode 100644 index 0000000..148a6fc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_701 @@ -0,0 +1,10 @@ +// +NA HNRNPA2B1_701 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_702 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_702 new file mode 100644 index 0000000..edf7b81 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_702 @@ -0,0 +1,10 @@ +// +NA HNRNPA2B1_702 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_703 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_703 new file mode 100644 index 0000000..56017dd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_703 @@ -0,0 +1,15 @@ +// +NA HNRNPA2B1_703 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_704 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_704 new file mode 100644 index 0000000..5e54bd9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_704 @@ -0,0 +1,15 @@ +// +NA HNRNPA2B1_704 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_705 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_705 new file mode 100644 index 0000000..fa457ce --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_705 @@ -0,0 +1,15 @@ +// +NA HNRNPA2B1_705 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_706 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_706 new file mode 100644 index 0000000..3f2a27f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_706 @@ -0,0 +1,15 @@ +// +NA HNRNPA2B1_706 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_707 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_707 new file mode 100644 index 0000000..49e5bbe --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_707 @@ -0,0 +1,15 @@ +// +NA HNRNPA2B1_707 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_708 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_708 new file mode 100644 index 0000000..95ee12d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_708 @@ -0,0 +1,15 @@ +// +NA HNRNPA2B1_708 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_709 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_709 new file mode 100644 index 0000000..4ed1d12 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_709 @@ -0,0 +1,10 @@ +// +NA HNRNPA2B1_709 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_710 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_710 new file mode 100644 index 0000000..9defcb3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_710 @@ -0,0 +1,10 @@ +// +NA HNRNPA2B1_710 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_711 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_711 new file mode 100644 index 0000000..01d7ab8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_711 @@ -0,0 +1,10 @@ +// +NA HNRNPA2B1_711 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA2B1_M024_0.6 b/resources/ATtRACT_hsa/motif_HNRNPA2B1_M024_0.6 new file mode 100644 index 0000000..d4d6629 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA2B1_M024_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPA2B1_M024_0.6 + A C G T +01 29.379 10.669 29.486 30.466 +02 5.824 5.824 5.824 82.529 +03 96.761 1.08 1.08 1.08 +04 1.08 1.08 96.761 1.08 +05 1.08 1.08 96.761 1.08 +06 1.08 1.08 96.761 1.08 +07 65.932 8.239 8.239 17.591 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPA3_123 b/resources/ATtRACT_hsa/motif_HNRNPA3_123 new file mode 100644 index 0000000..54dab98 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPA3_123 @@ -0,0 +1,15 @@ +// +NA HNRNPA3_123 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPAB_1396 b/resources/ATtRACT_hsa/motif_HNRNPAB_1396 new file mode 100644 index 0000000..face64b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPAB_1396 @@ -0,0 +1,10 @@ +// +NA HNRNPAB_1396 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPAB_76 b/resources/ATtRACT_hsa/motif_HNRNPAB_76 new file mode 100644 index 0000000..fb27d5d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPAB_76 @@ -0,0 +1,15 @@ +// +NA HNRNPAB_76 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +11 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPCL1_M158_0.6 b/resources/ATtRACT_hsa/motif_HNRNPCL1_M158_0.6 new file mode 100644 index 0000000..3125677 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPCL1_M158_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPCL1_M158_0.6 + A C G T +01 53.999 18.024 7.975 20.002 +02 0.531 0.531 0.531 98.407 +03 0.531 0.531 0.531 98.407 +04 0.531 0.531 0.531 98.407 +05 0.531 0.531 0.531 98.407 +06 0.531 0.531 0.531 98.407 +07 5.324 13.112 25.501 56.063 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_712 b/resources/ATtRACT_hsa/motif_HNRNPC_712 new file mode 100644 index 0000000..a14c654 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_712 @@ -0,0 +1,9 @@ +// +NA HNRNPC_712 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_720 b/resources/ATtRACT_hsa/motif_HNRNPC_720 new file mode 100644 index 0000000..369ce93 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_720 @@ -0,0 +1,11 @@ +// +NA HNRNPC_720 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_721 b/resources/ATtRACT_hsa/motif_HNRNPC_721 new file mode 100644 index 0000000..83521de --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_721 @@ -0,0 +1,11 @@ +// +NA HNRNPC_721 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_722 b/resources/ATtRACT_hsa/motif_HNRNPC_722 new file mode 100644 index 0000000..4a5db47 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_722 @@ -0,0 +1,11 @@ +// +NA HNRNPC_722 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_723 b/resources/ATtRACT_hsa/motif_HNRNPC_723 new file mode 100644 index 0000000..375d444 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_723 @@ -0,0 +1,9 @@ +// +NA HNRNPC_723 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_724 b/resources/ATtRACT_hsa/motif_HNRNPC_724 new file mode 100644 index 0000000..76399ac --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_724 @@ -0,0 +1,9 @@ +// +NA HNRNPC_724 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_725 b/resources/ATtRACT_hsa/motif_HNRNPC_725 new file mode 100644 index 0000000..9c70933 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_725 @@ -0,0 +1,11 @@ +// +NA HNRNPC_725 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_726 b/resources/ATtRACT_hsa/motif_HNRNPC_726 new file mode 100644 index 0000000..da37238 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_726 @@ -0,0 +1,11 @@ +// +NA HNRNPC_726 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_727 b/resources/ATtRACT_hsa/motif_HNRNPC_727 new file mode 100644 index 0000000..61cd41f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_727 @@ -0,0 +1,11 @@ +// +NA HNRNPC_727 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_729 b/resources/ATtRACT_hsa/motif_HNRNPC_729 new file mode 100644 index 0000000..f90fbb2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_729 @@ -0,0 +1,10 @@ +// +NA HNRNPC_729 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_730 b/resources/ATtRACT_hsa/motif_HNRNPC_730 new file mode 100644 index 0000000..9870e8a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_730 @@ -0,0 +1,10 @@ +// +NA HNRNPC_730 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_731 b/resources/ATtRACT_hsa/motif_HNRNPC_731 new file mode 100644 index 0000000..dcaa13d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_731 @@ -0,0 +1,10 @@ +// +NA HNRNPC_731 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_732 b/resources/ATtRACT_hsa/motif_HNRNPC_732 new file mode 100644 index 0000000..c3f1efe --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_732 @@ -0,0 +1,10 @@ +// +NA HNRNPC_732 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_733 b/resources/ATtRACT_hsa/motif_HNRNPC_733 new file mode 100644 index 0000000..b67b88c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_733 @@ -0,0 +1,10 @@ +// +NA HNRNPC_733 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_M025_0.6 b/resources/ATtRACT_hsa/motif_HNRNPC_M025_0.6 new file mode 100644 index 0000000..015b94a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_M025_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPC_M025_0.6 + A C G T +01 56.581 18.458 8.034 16.927 +02 0.615 0.615 0.615 98.154 +03 0.615 0.615 0.615 98.154 +04 0.615 0.615 0.615 98.154 +05 0.615 0.615 0.615 98.154 +06 0.615 0.615 0.615 98.154 +07 5.457 14.752 27.222 52.569 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPC_s13 b/resources/ATtRACT_hsa/motif_HNRNPC_s13 new file mode 100644 index 0000000..8250660 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPC_s13 @@ -0,0 +1,10 @@ +// +NA HNRNPC_s13 + A C G T +01 0.248 0.248 0.248 99.257 +02 0.248 0.248 0.248 99.257 +03 0.248 0.248 0.248 99.257 +04 0.248 0.248 0.248 99.257 +05 0.248 0.248 0.248 99.257 +06 25.0 25.0 25.0 25.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPDL_745 b/resources/ATtRACT_hsa/motif_HNRNPDL_745 new file mode 100644 index 0000000..b2e8589 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPDL_745 @@ -0,0 +1,10 @@ +// +NA HNRNPDL_745 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPDL_746 b/resources/ATtRACT_hsa/motif_HNRNPDL_746 new file mode 100644 index 0000000..878c2c4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPDL_746 @@ -0,0 +1,10 @@ +// +NA HNRNPDL_746 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPDL_747 b/resources/ATtRACT_hsa/motif_HNRNPDL_747 new file mode 100644 index 0000000..00b6efe --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPDL_747 @@ -0,0 +1,10 @@ +// +NA HNRNPDL_747 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPDL_s35 b/resources/ATtRACT_hsa/motif_HNRNPDL_s35 new file mode 100644 index 0000000..ec9b960 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPDL_s35 @@ -0,0 +1,10 @@ +// +NA HNRNPDL_s35 + A C G T +01 49.51 0.49 0.49 49.51 +02 0.49 49.51 49.51 0.49 +03 0.49 0.49 0.49 98.529 +04 0.49 49.51 49.51 0.49 +05 0.49 49.51 49.51 0.49 +06 49.51 49.51 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPDL_s36 b/resources/ATtRACT_hsa/motif_HNRNPDL_s36 new file mode 100644 index 0000000..4bcef18 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPDL_s36 @@ -0,0 +1,11 @@ +// +NA HNRNPDL_s36 + A C G T +01 84.433 0.077 15.414 0.077 +02 7.745 69.095 7.745 15.414 +03 0.077 7.745 15.414 76.764 +04 76.764 7.745 0.077 15.414 +05 7.745 7.745 76.764 7.745 +06 23.083 61.426 7.745 7.745 +07 46.089 23.083 15.414 15.414 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPDL_s43 b/resources/ATtRACT_hsa/motif_HNRNPDL_s43 new file mode 100644 index 0000000..31ae8ed --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPDL_s43 @@ -0,0 +1,13 @@ +// +NA HNRNPDL_s43 + A C G T +01 25.0 8.389 66.528 0.083 +02 16.694 41.611 41.611 0.083 +03 83.14 8.389 0.083 8.389 +04 0.083 58.223 16.694 25.0 +05 0.083 8.389 0.083 91.445 +06 91.445 0.083 0.083 8.389 +07 8.389 0.083 91.445 0.083 +08 16.694 58.223 25.0 0.083 +09 0.083 74.834 0.083 25.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPDL_s44 b/resources/ATtRACT_hsa/motif_HNRNPDL_s44 new file mode 100644 index 0000000..6449a81 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPDL_s44 @@ -0,0 +1,12 @@ +// +NA HNRNPDL_s44 + A C G T +01 59.722 0.198 39.881 0.198 +02 39.881 39.881 0.198 20.04 +03 0.198 59.722 0.198 39.881 +04 59.722 0.198 0.198 39.881 +05 59.722 20.04 20.04 0.198 +06 0.198 0.198 99.405 0.198 +07 0.198 79.563 0.198 20.04 +08 79.563 0.198 20.04 0.198 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPDL_s79 b/resources/ATtRACT_hsa/motif_HNRNPDL_s79 new file mode 100644 index 0000000..9b8c653 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPDL_s79 @@ -0,0 +1,14 @@ +// +NA HNRNPDL_s79 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 97.115 0.962 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_735 b/resources/ATtRACT_hsa/motif_HNRNPD_735 new file mode 100644 index 0000000..2cde681 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_735 @@ -0,0 +1,10 @@ +// +NA HNRNPD_735 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_736 b/resources/ATtRACT_hsa/motif_HNRNPD_736 new file mode 100644 index 0000000..e5d5802 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_736 @@ -0,0 +1,10 @@ +// +NA HNRNPD_736 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_737 b/resources/ATtRACT_hsa/motif_HNRNPD_737 new file mode 100644 index 0000000..53ce02b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_737 @@ -0,0 +1,10 @@ +// +NA HNRNPD_737 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_738 b/resources/ATtRACT_hsa/motif_HNRNPD_738 new file mode 100644 index 0000000..47493a5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_738 @@ -0,0 +1,13 @@ +// +NA HNRNPD_738 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_739 b/resources/ATtRACT_hsa/motif_HNRNPD_739 new file mode 100644 index 0000000..ace8982 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_739 @@ -0,0 +1,9 @@ +// +NA HNRNPD_739 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_740 b/resources/ATtRACT_hsa/motif_HNRNPD_740 new file mode 100644 index 0000000..b2800ec --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_740 @@ -0,0 +1,11 @@ +// +NA HNRNPD_740 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_741 b/resources/ATtRACT_hsa/motif_HNRNPD_741 new file mode 100644 index 0000000..d8da7b8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_741 @@ -0,0 +1,10 @@ +// +NA HNRNPD_741 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_742 b/resources/ATtRACT_hsa/motif_HNRNPD_742 new file mode 100644 index 0000000..08a4db5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_742 @@ -0,0 +1,10 @@ +// +NA HNRNPD_742 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_743 b/resources/ATtRACT_hsa/motif_HNRNPD_743 new file mode 100644 index 0000000..abe5475 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_743 @@ -0,0 +1,10 @@ +// +NA HNRNPD_743 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPD_744 b/resources/ATtRACT_hsa/motif_HNRNPD_744 new file mode 100644 index 0000000..0361e8c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPD_744 @@ -0,0 +1,10 @@ +// +NA HNRNPD_744 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_1331 b/resources/ATtRACT_hsa/motif_HNRNPF_1331 new file mode 100644 index 0000000..0fc74ec --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_1331 @@ -0,0 +1,14 @@ +// +NA HNRNPF_1331 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_171 b/resources/ATtRACT_hsa/motif_HNRNPF_171 new file mode 100644 index 0000000..8385612 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_171 @@ -0,0 +1,9 @@ +// +NA HNRNPF_171 + A C G T +01 33.296 0.111 33.296 33.296 +02 0.111 0.111 99.668 0.111 +03 0.111 0.111 99.668 0.111 +04 0.111 0.111 99.668 0.111 +05 33.296 0.111 33.296 33.296 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_801 b/resources/ATtRACT_hsa/motif_HNRNPF_801 new file mode 100644 index 0000000..eb634ff --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_801 @@ -0,0 +1,9 @@ +// +NA HNRNPF_801 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_802 b/resources/ATtRACT_hsa/motif_HNRNPF_802 new file mode 100644 index 0000000..4afa7e0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_802 @@ -0,0 +1,9 @@ +// +NA HNRNPF_802 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_803 b/resources/ATtRACT_hsa/motif_HNRNPF_803 new file mode 100644 index 0000000..e1413c3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_803 @@ -0,0 +1,13 @@ +// +NA HNRNPF_803 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_804 b/resources/ATtRACT_hsa/motif_HNRNPF_804 new file mode 100644 index 0000000..5791918 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_804 @@ -0,0 +1,16 @@ +// +NA HNRNPF_804 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 0.962 97.115 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_805 b/resources/ATtRACT_hsa/motif_HNRNPF_805 new file mode 100644 index 0000000..d9d6114 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_805 @@ -0,0 +1,11 @@ +// +NA HNRNPF_805 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_806 b/resources/ATtRACT_hsa/motif_HNRNPF_806 new file mode 100644 index 0000000..0e81cce --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_806 @@ -0,0 +1,9 @@ +// +NA HNRNPF_806 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_807 b/resources/ATtRACT_hsa/motif_HNRNPF_807 new file mode 100644 index 0000000..69eeeea --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_807 @@ -0,0 +1,9 @@ +// +NA HNRNPF_807 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_808 b/resources/ATtRACT_hsa/motif_HNRNPF_808 new file mode 100644 index 0000000..8f20924 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_808 @@ -0,0 +1,9 @@ +// +NA HNRNPF_808 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_809 b/resources/ATtRACT_hsa/motif_HNRNPF_809 new file mode 100644 index 0000000..234a79b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_809 @@ -0,0 +1,10 @@ +// +NA HNRNPF_809 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_810 b/resources/ATtRACT_hsa/motif_HNRNPF_810 new file mode 100644 index 0000000..737e62d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_810 @@ -0,0 +1,9 @@ +// +NA HNRNPF_810 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_811 b/resources/ATtRACT_hsa/motif_HNRNPF_811 new file mode 100644 index 0000000..ae6eb78 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_811 @@ -0,0 +1,9 @@ +// +NA HNRNPF_811 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_812 b/resources/ATtRACT_hsa/motif_HNRNPF_812 new file mode 100644 index 0000000..e6a7b90 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_812 @@ -0,0 +1,9 @@ +// +NA HNRNPF_812 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_813 b/resources/ATtRACT_hsa/motif_HNRNPF_813 new file mode 100644 index 0000000..7f206c3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_813 @@ -0,0 +1,12 @@ +// +NA HNRNPF_813 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_814 b/resources/ATtRACT_hsa/motif_HNRNPF_814 new file mode 100644 index 0000000..f4eb092 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_814 @@ -0,0 +1,12 @@ +// +NA HNRNPF_814 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_815 b/resources/ATtRACT_hsa/motif_HNRNPF_815 new file mode 100644 index 0000000..38be527 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_815 @@ -0,0 +1,15 @@ +// +NA HNRNPF_815 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_816 b/resources/ATtRACT_hsa/motif_HNRNPF_816 new file mode 100644 index 0000000..e6cd828 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_816 @@ -0,0 +1,10 @@ +// +NA HNRNPF_816 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_817 b/resources/ATtRACT_hsa/motif_HNRNPF_817 new file mode 100644 index 0000000..4e08b7c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_817 @@ -0,0 +1,10 @@ +// +NA HNRNPF_817 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_818 b/resources/ATtRACT_hsa/motif_HNRNPF_818 new file mode 100644 index 0000000..3e7ec48 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_818 @@ -0,0 +1,9 @@ +// +NA HNRNPF_818 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_819 b/resources/ATtRACT_hsa/motif_HNRNPF_819 new file mode 100644 index 0000000..dad0880 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_819 @@ -0,0 +1,12 @@ +// +NA HNRNPF_819 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_820 b/resources/ATtRACT_hsa/motif_HNRNPF_820 new file mode 100644 index 0000000..c7e97c1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_820 @@ -0,0 +1,9 @@ +// +NA HNRNPF_820 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_821 b/resources/ATtRACT_hsa/motif_HNRNPF_821 new file mode 100644 index 0000000..cf7fa83 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_821 @@ -0,0 +1,11 @@ +// +NA HNRNPF_821 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_822 b/resources/ATtRACT_hsa/motif_HNRNPF_822 new file mode 100644 index 0000000..50cf5fb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_822 @@ -0,0 +1,11 @@ +// +NA HNRNPF_822 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_823 b/resources/ATtRACT_hsa/motif_HNRNPF_823 new file mode 100644 index 0000000..7f7cbeb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_823 @@ -0,0 +1,9 @@ +// +NA HNRNPF_823 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_824 b/resources/ATtRACT_hsa/motif_HNRNPF_824 new file mode 100644 index 0000000..04f609d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_824 @@ -0,0 +1,9 @@ +// +NA HNRNPF_824 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_825 b/resources/ATtRACT_hsa/motif_HNRNPF_825 new file mode 100644 index 0000000..eb52c87 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_825 @@ -0,0 +1,9 @@ +// +NA HNRNPF_825 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_826 b/resources/ATtRACT_hsa/motif_HNRNPF_826 new file mode 100644 index 0000000..faee6e2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_826 @@ -0,0 +1,9 @@ +// +NA HNRNPF_826 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_827 b/resources/ATtRACT_hsa/motif_HNRNPF_827 new file mode 100644 index 0000000..6688629 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_827 @@ -0,0 +1,9 @@ +// +NA HNRNPF_827 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_828 b/resources/ATtRACT_hsa/motif_HNRNPF_828 new file mode 100644 index 0000000..80cb60b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_828 @@ -0,0 +1,9 @@ +// +NA HNRNPF_828 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_829 b/resources/ATtRACT_hsa/motif_HNRNPF_829 new file mode 100644 index 0000000..6932597 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_829 @@ -0,0 +1,9 @@ +// +NA HNRNPF_829 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_830 b/resources/ATtRACT_hsa/motif_HNRNPF_830 new file mode 100644 index 0000000..dd421be --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_830 @@ -0,0 +1,9 @@ +// +NA HNRNPF_830 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_831 b/resources/ATtRACT_hsa/motif_HNRNPF_831 new file mode 100644 index 0000000..61dceae --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_831 @@ -0,0 +1,9 @@ +// +NA HNRNPF_831 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_832 b/resources/ATtRACT_hsa/motif_HNRNPF_832 new file mode 100644 index 0000000..6f6b500 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_832 @@ -0,0 +1,9 @@ +// +NA HNRNPF_832 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_833 b/resources/ATtRACT_hsa/motif_HNRNPF_833 new file mode 100644 index 0000000..25d85f3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_833 @@ -0,0 +1,9 @@ +// +NA HNRNPF_833 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_834 b/resources/ATtRACT_hsa/motif_HNRNPF_834 new file mode 100644 index 0000000..009fa8c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_834 @@ -0,0 +1,9 @@ +// +NA HNRNPF_834 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_835 b/resources/ATtRACT_hsa/motif_HNRNPF_835 new file mode 100644 index 0000000..c84b6f9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_835 @@ -0,0 +1,9 @@ +// +NA HNRNPF_835 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_836 b/resources/ATtRACT_hsa/motif_HNRNPF_836 new file mode 100644 index 0000000..24deddf --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_836 @@ -0,0 +1,14 @@ +// +NA HNRNPF_836 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_837 b/resources/ATtRACT_hsa/motif_HNRNPF_837 new file mode 100644 index 0000000..dfafc3e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_837 @@ -0,0 +1,14 @@ +// +NA HNRNPF_837 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_838 b/resources/ATtRACT_hsa/motif_HNRNPF_838 new file mode 100644 index 0000000..e1a3c31 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_838 @@ -0,0 +1,14 @@ +// +NA HNRNPF_838 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_839 b/resources/ATtRACT_hsa/motif_HNRNPF_839 new file mode 100644 index 0000000..f4522e0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_839 @@ -0,0 +1,10 @@ +// +NA HNRNPF_839 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPF_840 b/resources/ATtRACT_hsa/motif_HNRNPF_840 new file mode 100644 index 0000000..1647dd0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPF_840 @@ -0,0 +1,10 @@ +// +NA HNRNPF_840 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_131 b/resources/ATtRACT_hsa/motif_HNRNPH1_131 new file mode 100644 index 0000000..0114c3f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_131 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_131 + A C G T +01 33.296 0.111 33.296 33.296 +02 0.111 0.111 99.668 0.111 +03 0.111 0.111 99.668 0.111 +04 0.111 0.111 99.668 0.111 +05 33.296 0.111 33.296 33.296 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_1347 b/resources/ATtRACT_hsa/motif_HNRNPH1_1347 new file mode 100644 index 0000000..6c2994b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_1347 @@ -0,0 +1,14 @@ +// +NA HNRNPH1_1347 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_1387 b/resources/ATtRACT_hsa/motif_HNRNPH1_1387 new file mode 100644 index 0000000..c52aece --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_1387 @@ -0,0 +1,8 @@ +// +NA HNRNPH1_1387 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_1391 b/resources/ATtRACT_hsa/motif_HNRNPH1_1391 new file mode 100644 index 0000000..b7997c6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_1391 @@ -0,0 +1,8 @@ +// +NA HNRNPH1_1391 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_850 b/resources/ATtRACT_hsa/motif_HNRNPH1_850 new file mode 100644 index 0000000..fe7cd10 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_850 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_850 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_851 b/resources/ATtRACT_hsa/motif_HNRNPH1_851 new file mode 100644 index 0000000..f03e2f2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_851 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_851 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_852 b/resources/ATtRACT_hsa/motif_HNRNPH1_852 new file mode 100644 index 0000000..6d1b41b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_852 @@ -0,0 +1,13 @@ +// +NA HNRNPH1_852 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_853 b/resources/ATtRACT_hsa/motif_HNRNPH1_853 new file mode 100644 index 0000000..2832e6e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_853 @@ -0,0 +1,13 @@ +// +NA HNRNPH1_853 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_854 b/resources/ATtRACT_hsa/motif_HNRNPH1_854 new file mode 100644 index 0000000..7872f67 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_854 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_854 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_855 b/resources/ATtRACT_hsa/motif_HNRNPH1_855 new file mode 100644 index 0000000..76823ea --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_855 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_855 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_856 b/resources/ATtRACT_hsa/motif_HNRNPH1_856 new file mode 100644 index 0000000..bc117c3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_856 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_856 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_857 b/resources/ATtRACT_hsa/motif_HNRNPH1_857 new file mode 100644 index 0000000..c6e1246 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_857 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_857 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_858 b/resources/ATtRACT_hsa/motif_HNRNPH1_858 new file mode 100644 index 0000000..6f6d068 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_858 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_858 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_859 b/resources/ATtRACT_hsa/motif_HNRNPH1_859 new file mode 100644 index 0000000..f2d0ac0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_859 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_859 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_860 b/resources/ATtRACT_hsa/motif_HNRNPH1_860 new file mode 100644 index 0000000..9582ebf --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_860 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_860 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_861 b/resources/ATtRACT_hsa/motif_HNRNPH1_861 new file mode 100644 index 0000000..ca038f8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_861 @@ -0,0 +1,10 @@ +// +NA HNRNPH1_861 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_862 b/resources/ATtRACT_hsa/motif_HNRNPH1_862 new file mode 100644 index 0000000..c081b96 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_862 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_862 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_863 b/resources/ATtRACT_hsa/motif_HNRNPH1_863 new file mode 100644 index 0000000..463093f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_863 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_863 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_864 b/resources/ATtRACT_hsa/motif_HNRNPH1_864 new file mode 100644 index 0000000..4ba920d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_864 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_864 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_865 b/resources/ATtRACT_hsa/motif_HNRNPH1_865 new file mode 100644 index 0000000..348b489 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_865 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_865 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_866 b/resources/ATtRACT_hsa/motif_HNRNPH1_866 new file mode 100644 index 0000000..a928ee7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_866 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_866 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_867 b/resources/ATtRACT_hsa/motif_HNRNPH1_867 new file mode 100644 index 0000000..2d896b1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_867 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_867 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_868 b/resources/ATtRACT_hsa/motif_HNRNPH1_868 new file mode 100644 index 0000000..9644341 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_868 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_868 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_869 b/resources/ATtRACT_hsa/motif_HNRNPH1_869 new file mode 100644 index 0000000..e2961e2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_869 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_869 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_870 b/resources/ATtRACT_hsa/motif_HNRNPH1_870 new file mode 100644 index 0000000..a011363 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_870 @@ -0,0 +1,12 @@ +// +NA HNRNPH1_870 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_871 b/resources/ATtRACT_hsa/motif_HNRNPH1_871 new file mode 100644 index 0000000..899c8e2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_871 @@ -0,0 +1,12 @@ +// +NA HNRNPH1_871 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_872 b/resources/ATtRACT_hsa/motif_HNRNPH1_872 new file mode 100644 index 0000000..9bd810f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_872 @@ -0,0 +1,15 @@ +// +NA HNRNPH1_872 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_873 b/resources/ATtRACT_hsa/motif_HNRNPH1_873 new file mode 100644 index 0000000..b681e39 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_873 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_873 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_874 b/resources/ATtRACT_hsa/motif_HNRNPH1_874 new file mode 100644 index 0000000..6b7fefd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_874 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_874 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_875 b/resources/ATtRACT_hsa/motif_HNRNPH1_875 new file mode 100644 index 0000000..5e53530 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_875 @@ -0,0 +1,10 @@ +// +NA HNRNPH1_875 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_876 b/resources/ATtRACT_hsa/motif_HNRNPH1_876 new file mode 100644 index 0000000..c0d9c71 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_876 @@ -0,0 +1,10 @@ +// +NA HNRNPH1_876 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_877 b/resources/ATtRACT_hsa/motif_HNRNPH1_877 new file mode 100644 index 0000000..f596483 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_877 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_877 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_878 b/resources/ATtRACT_hsa/motif_HNRNPH1_878 new file mode 100644 index 0000000..940fdab --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_878 @@ -0,0 +1,12 @@ +// +NA HNRNPH1_878 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_879 b/resources/ATtRACT_hsa/motif_HNRNPH1_879 new file mode 100644 index 0000000..2966103 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_879 @@ -0,0 +1,14 @@ +// +NA HNRNPH1_879 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_880 b/resources/ATtRACT_hsa/motif_HNRNPH1_880 new file mode 100644 index 0000000..9657830 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_880 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_880 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_882 b/resources/ATtRACT_hsa/motif_HNRNPH1_882 new file mode 100644 index 0000000..48bc9fe --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_882 @@ -0,0 +1,10 @@ +// +NA HNRNPH1_882 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_883 b/resources/ATtRACT_hsa/motif_HNRNPH1_883 new file mode 100644 index 0000000..d428b9e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_883 @@ -0,0 +1,11 @@ +// +NA HNRNPH1_883 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_884 b/resources/ATtRACT_hsa/motif_HNRNPH1_884 new file mode 100644 index 0000000..870a8f1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_884 @@ -0,0 +1,11 @@ +// +NA HNRNPH1_884 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_885 b/resources/ATtRACT_hsa/motif_HNRNPH1_885 new file mode 100644 index 0000000..5444134 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_885 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_885 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_886 b/resources/ATtRACT_hsa/motif_HNRNPH1_886 new file mode 100644 index 0000000..04920e6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_886 @@ -0,0 +1,15 @@ +// +NA HNRNPH1_886 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_887 b/resources/ATtRACT_hsa/motif_HNRNPH1_887 new file mode 100644 index 0000000..1fe55fa --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_887 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_887 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_888 b/resources/ATtRACT_hsa/motif_HNRNPH1_888 new file mode 100644 index 0000000..297bcad --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_888 @@ -0,0 +1,10 @@ +// +NA HNRNPH1_888 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_889 b/resources/ATtRACT_hsa/motif_HNRNPH1_889 new file mode 100644 index 0000000..ddd9dc0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_889 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_889 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_890 b/resources/ATtRACT_hsa/motif_HNRNPH1_890 new file mode 100644 index 0000000..da5530a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_890 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_890 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_891 b/resources/ATtRACT_hsa/motif_HNRNPH1_891 new file mode 100644 index 0000000..2e7bd10 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_891 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_891 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_892 b/resources/ATtRACT_hsa/motif_HNRNPH1_892 new file mode 100644 index 0000000..3e90ac6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_892 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_892 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_893 b/resources/ATtRACT_hsa/motif_HNRNPH1_893 new file mode 100644 index 0000000..900dff0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_893 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_893 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_894 b/resources/ATtRACT_hsa/motif_HNRNPH1_894 new file mode 100644 index 0000000..b1597b7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_894 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_894 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_895 b/resources/ATtRACT_hsa/motif_HNRNPH1_895 new file mode 100644 index 0000000..0016857 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_895 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_895 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_896 b/resources/ATtRACT_hsa/motif_HNRNPH1_896 new file mode 100644 index 0000000..3b366c5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_896 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_896 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_897 b/resources/ATtRACT_hsa/motif_HNRNPH1_897 new file mode 100644 index 0000000..7628a52 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_897 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_897 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_898 b/resources/ATtRACT_hsa/motif_HNRNPH1_898 new file mode 100644 index 0000000..34bb978 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_898 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_898 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_899 b/resources/ATtRACT_hsa/motif_HNRNPH1_899 new file mode 100644 index 0000000..6ec01dd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_899 @@ -0,0 +1,9 @@ +// +NA HNRNPH1_899 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_900 b/resources/ATtRACT_hsa/motif_HNRNPH1_900 new file mode 100644 index 0000000..da2f050 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_900 @@ -0,0 +1,14 @@ +// +NA HNRNPH1_900 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_901 b/resources/ATtRACT_hsa/motif_HNRNPH1_901 new file mode 100644 index 0000000..8ffcd8a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_901 @@ -0,0 +1,14 @@ +// +NA HNRNPH1_901 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH1_902 b/resources/ATtRACT_hsa/motif_HNRNPH1_902 new file mode 100644 index 0000000..7d81126 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH1_902 @@ -0,0 +1,14 @@ +// +NA HNRNPH1_902 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_142 b/resources/ATtRACT_hsa/motif_HNRNPH2_142 new file mode 100644 index 0000000..9678f30 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_142 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_142 + A C G T +01 33.296 0.111 33.296 33.296 +02 0.111 0.111 99.668 0.111 +03 0.111 0.111 99.668 0.111 +04 0.111 0.111 99.668 0.111 +05 33.296 0.111 33.296 33.296 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_903 b/resources/ATtRACT_hsa/motif_HNRNPH2_903 new file mode 100644 index 0000000..a23afbc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_903 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_903 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_904 b/resources/ATtRACT_hsa/motif_HNRNPH2_904 new file mode 100644 index 0000000..9c6d58f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_904 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_904 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_905 b/resources/ATtRACT_hsa/motif_HNRNPH2_905 new file mode 100644 index 0000000..9676afc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_905 @@ -0,0 +1,13 @@ +// +NA HNRNPH2_905 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_906 b/resources/ATtRACT_hsa/motif_HNRNPH2_906 new file mode 100644 index 0000000..02271ad --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_906 @@ -0,0 +1,13 @@ +// +NA HNRNPH2_906 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_907 b/resources/ATtRACT_hsa/motif_HNRNPH2_907 new file mode 100644 index 0000000..9dc14ae --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_907 @@ -0,0 +1,10 @@ +// +NA HNRNPH2_907 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_908 b/resources/ATtRACT_hsa/motif_HNRNPH2_908 new file mode 100644 index 0000000..a5a8553 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_908 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_908 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_909 b/resources/ATtRACT_hsa/motif_HNRNPH2_909 new file mode 100644 index 0000000..04ac3c1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_909 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_909 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_910 b/resources/ATtRACT_hsa/motif_HNRNPH2_910 new file mode 100644 index 0000000..69a9feb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_910 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_910 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_911 b/resources/ATtRACT_hsa/motif_HNRNPH2_911 new file mode 100644 index 0000000..ae07bc9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_911 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_911 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_912 b/resources/ATtRACT_hsa/motif_HNRNPH2_912 new file mode 100644 index 0000000..c7fbe10 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_912 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_912 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_913 b/resources/ATtRACT_hsa/motif_HNRNPH2_913 new file mode 100644 index 0000000..6c1ddef --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_913 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_913 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_914 b/resources/ATtRACT_hsa/motif_HNRNPH2_914 new file mode 100644 index 0000000..d0239b8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_914 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_914 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_915 b/resources/ATtRACT_hsa/motif_HNRNPH2_915 new file mode 100644 index 0000000..45f9efd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_915 @@ -0,0 +1,10 @@ +// +NA HNRNPH2_915 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_916 b/resources/ATtRACT_hsa/motif_HNRNPH2_916 new file mode 100644 index 0000000..5b341fa --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_916 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_916 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_917 b/resources/ATtRACT_hsa/motif_HNRNPH2_917 new file mode 100644 index 0000000..e321b1f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_917 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_917 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_918 b/resources/ATtRACT_hsa/motif_HNRNPH2_918 new file mode 100644 index 0000000..9fe47b3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_918 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_918 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_919 b/resources/ATtRACT_hsa/motif_HNRNPH2_919 new file mode 100644 index 0000000..1a1b1df --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_919 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_919 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_920 b/resources/ATtRACT_hsa/motif_HNRNPH2_920 new file mode 100644 index 0000000..6b25083 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_920 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_920 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_921 b/resources/ATtRACT_hsa/motif_HNRNPH2_921 new file mode 100644 index 0000000..1e9a717 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_921 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_921 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_922 b/resources/ATtRACT_hsa/motif_HNRNPH2_922 new file mode 100644 index 0000000..44de901 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_922 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_922 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_923 b/resources/ATtRACT_hsa/motif_HNRNPH2_923 new file mode 100644 index 0000000..1a5bb7f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_923 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_923 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_924 b/resources/ATtRACT_hsa/motif_HNRNPH2_924 new file mode 100644 index 0000000..d709367 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_924 @@ -0,0 +1,12 @@ +// +NA HNRNPH2_924 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_925 b/resources/ATtRACT_hsa/motif_HNRNPH2_925 new file mode 100644 index 0000000..6e82754 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_925 @@ -0,0 +1,12 @@ +// +NA HNRNPH2_925 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_926 b/resources/ATtRACT_hsa/motif_HNRNPH2_926 new file mode 100644 index 0000000..98beeb3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_926 @@ -0,0 +1,15 @@ +// +NA HNRNPH2_926 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_927 b/resources/ATtRACT_hsa/motif_HNRNPH2_927 new file mode 100644 index 0000000..29f2ba7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_927 @@ -0,0 +1,10 @@ +// +NA HNRNPH2_927 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_928 b/resources/ATtRACT_hsa/motif_HNRNPH2_928 new file mode 100644 index 0000000..5b89758 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_928 @@ -0,0 +1,10 @@ +// +NA HNRNPH2_928 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_929 b/resources/ATtRACT_hsa/motif_HNRNPH2_929 new file mode 100644 index 0000000..97e0db1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_929 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_929 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_930 b/resources/ATtRACT_hsa/motif_HNRNPH2_930 new file mode 100644 index 0000000..1193a69 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_930 @@ -0,0 +1,12 @@ +// +NA HNRNPH2_930 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_931 b/resources/ATtRACT_hsa/motif_HNRNPH2_931 new file mode 100644 index 0000000..e123ad5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_931 @@ -0,0 +1,14 @@ +// +NA HNRNPH2_931 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_932 b/resources/ATtRACT_hsa/motif_HNRNPH2_932 new file mode 100644 index 0000000..93ace7a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_932 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_932 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_933 b/resources/ATtRACT_hsa/motif_HNRNPH2_933 new file mode 100644 index 0000000..8bcc969 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_933 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_933 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_934 b/resources/ATtRACT_hsa/motif_HNRNPH2_934 new file mode 100644 index 0000000..28f2110 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_934 @@ -0,0 +1,10 @@ +// +NA HNRNPH2_934 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_935 b/resources/ATtRACT_hsa/motif_HNRNPH2_935 new file mode 100644 index 0000000..efea561 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_935 @@ -0,0 +1,11 @@ +// +NA HNRNPH2_935 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_936 b/resources/ATtRACT_hsa/motif_HNRNPH2_936 new file mode 100644 index 0000000..6543d3c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_936 @@ -0,0 +1,11 @@ +// +NA HNRNPH2_936 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_937 b/resources/ATtRACT_hsa/motif_HNRNPH2_937 new file mode 100644 index 0000000..391f21d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_937 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_937 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_938 b/resources/ATtRACT_hsa/motif_HNRNPH2_938 new file mode 100644 index 0000000..08ded88 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_938 @@ -0,0 +1,15 @@ +// +NA HNRNPH2_938 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_939 b/resources/ATtRACT_hsa/motif_HNRNPH2_939 new file mode 100644 index 0000000..9d35b4c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_939 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_939 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_940 b/resources/ATtRACT_hsa/motif_HNRNPH2_940 new file mode 100644 index 0000000..98a61ae --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_940 @@ -0,0 +1,10 @@ +// +NA HNRNPH2_940 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_941 b/resources/ATtRACT_hsa/motif_HNRNPH2_941 new file mode 100644 index 0000000..ea16010 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_941 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_941 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_942 b/resources/ATtRACT_hsa/motif_HNRNPH2_942 new file mode 100644 index 0000000..c6e181f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_942 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_942 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_943 b/resources/ATtRACT_hsa/motif_HNRNPH2_943 new file mode 100644 index 0000000..24d9e53 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_943 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_943 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_944 b/resources/ATtRACT_hsa/motif_HNRNPH2_944 new file mode 100644 index 0000000..967cf01 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_944 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_944 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_945 b/resources/ATtRACT_hsa/motif_HNRNPH2_945 new file mode 100644 index 0000000..86fa386 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_945 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_945 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_946 b/resources/ATtRACT_hsa/motif_HNRNPH2_946 new file mode 100644 index 0000000..6406628 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_946 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_946 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_947 b/resources/ATtRACT_hsa/motif_HNRNPH2_947 new file mode 100644 index 0000000..09aedcb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_947 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_947 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_948 b/resources/ATtRACT_hsa/motif_HNRNPH2_948 new file mode 100644 index 0000000..cb9dbb2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_948 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_948 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_949 b/resources/ATtRACT_hsa/motif_HNRNPH2_949 new file mode 100644 index 0000000..4aebd94 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_949 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_949 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_950 b/resources/ATtRACT_hsa/motif_HNRNPH2_950 new file mode 100644 index 0000000..c6719bd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_950 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_950 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_951 b/resources/ATtRACT_hsa/motif_HNRNPH2_951 new file mode 100644 index 0000000..164232e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_951 @@ -0,0 +1,9 @@ +// +NA HNRNPH2_951 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_952 b/resources/ATtRACT_hsa/motif_HNRNPH2_952 new file mode 100644 index 0000000..63a20e9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_952 @@ -0,0 +1,14 @@ +// +NA HNRNPH2_952 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_953 b/resources/ATtRACT_hsa/motif_HNRNPH2_953 new file mode 100644 index 0000000..ed4de63 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_953 @@ -0,0 +1,14 @@ +// +NA HNRNPH2_953 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_954 b/resources/ATtRACT_hsa/motif_HNRNPH2_954 new file mode 100644 index 0000000..b9f0f40 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_954 @@ -0,0 +1,14 @@ +// +NA HNRNPH2_954 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH2_M151_0.6 b/resources/ATtRACT_hsa/motif_HNRNPH2_M151_0.6 new file mode 100644 index 0000000..a5ae647 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH2_M151_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPH2_M151_0.6 + A C G T +01 5.575 12.09 76.76 5.575 +02 2.949 9.177 84.925 2.949 +03 9.91 6.972 82.535 0.583 +04 76.08 6.972 7.038 9.91 +05 0.583 6.972 81.22 11.226 +06 0.583 6.972 91.862 0.583 +07 13.687 13.624 65.153 7.536 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_182 b/resources/ATtRACT_hsa/motif_HNRNPH3_182 new file mode 100644 index 0000000..f4f8bbe --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_182 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_182 + A C G T +01 33.296 0.111 33.296 33.296 +02 0.111 0.111 99.668 0.111 +03 0.111 0.111 99.668 0.111 +04 0.111 0.111 99.668 0.111 +05 33.296 0.111 33.296 33.296 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_955 b/resources/ATtRACT_hsa/motif_HNRNPH3_955 new file mode 100644 index 0000000..8b70794 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_955 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_955 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_956 b/resources/ATtRACT_hsa/motif_HNRNPH3_956 new file mode 100644 index 0000000..83953f9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_956 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_956 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_957 b/resources/ATtRACT_hsa/motif_HNRNPH3_957 new file mode 100644 index 0000000..6395b1f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_957 @@ -0,0 +1,13 @@ +// +NA HNRNPH3_957 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_958 b/resources/ATtRACT_hsa/motif_HNRNPH3_958 new file mode 100644 index 0000000..c1e7c04 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_958 @@ -0,0 +1,13 @@ +// +NA HNRNPH3_958 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_959 b/resources/ATtRACT_hsa/motif_HNRNPH3_959 new file mode 100644 index 0000000..2653f96 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_959 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_959 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_960 b/resources/ATtRACT_hsa/motif_HNRNPH3_960 new file mode 100644 index 0000000..39cb6da --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_960 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_960 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_961 b/resources/ATtRACT_hsa/motif_HNRNPH3_961 new file mode 100644 index 0000000..1a396ea --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_961 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_961 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_962 b/resources/ATtRACT_hsa/motif_HNRNPH3_962 new file mode 100644 index 0000000..239a8da --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_962 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_962 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_963 b/resources/ATtRACT_hsa/motif_HNRNPH3_963 new file mode 100644 index 0000000..b35da1a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_963 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_963 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_964 b/resources/ATtRACT_hsa/motif_HNRNPH3_964 new file mode 100644 index 0000000..f2ae17e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_964 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_964 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_965 b/resources/ATtRACT_hsa/motif_HNRNPH3_965 new file mode 100644 index 0000000..a4042e6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_965 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_965 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_966 b/resources/ATtRACT_hsa/motif_HNRNPH3_966 new file mode 100644 index 0000000..35c5e19 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_966 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_966 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_967 b/resources/ATtRACT_hsa/motif_HNRNPH3_967 new file mode 100644 index 0000000..f42f6ba --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_967 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_967 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_968 b/resources/ATtRACT_hsa/motif_HNRNPH3_968 new file mode 100644 index 0000000..5885f39 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_968 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_968 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_969 b/resources/ATtRACT_hsa/motif_HNRNPH3_969 new file mode 100644 index 0000000..9f9b0ed --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_969 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_969 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_970 b/resources/ATtRACT_hsa/motif_HNRNPH3_970 new file mode 100644 index 0000000..d728129 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_970 @@ -0,0 +1,15 @@ +// +NA HNRNPH3_970 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_971 b/resources/ATtRACT_hsa/motif_HNRNPH3_971 new file mode 100644 index 0000000..2ed0b44 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_971 @@ -0,0 +1,10 @@ +// +NA HNRNPH3_971 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_972 b/resources/ATtRACT_hsa/motif_HNRNPH3_972 new file mode 100644 index 0000000..b5577c7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_972 @@ -0,0 +1,10 @@ +// +NA HNRNPH3_972 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_973 b/resources/ATtRACT_hsa/motif_HNRNPH3_973 new file mode 100644 index 0000000..35d76f4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_973 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_973 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_974 b/resources/ATtRACT_hsa/motif_HNRNPH3_974 new file mode 100644 index 0000000..c8c0f03 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_974 @@ -0,0 +1,12 @@ +// +NA HNRNPH3_974 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_975 b/resources/ATtRACT_hsa/motif_HNRNPH3_975 new file mode 100644 index 0000000..7f6bdb3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_975 @@ -0,0 +1,10 @@ +// +NA HNRNPH3_975 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_976 b/resources/ATtRACT_hsa/motif_HNRNPH3_976 new file mode 100644 index 0000000..93eefac --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_976 @@ -0,0 +1,11 @@ +// +NA HNRNPH3_976 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_977 b/resources/ATtRACT_hsa/motif_HNRNPH3_977 new file mode 100644 index 0000000..67dd703 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_977 @@ -0,0 +1,11 @@ +// +NA HNRNPH3_977 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_978 b/resources/ATtRACT_hsa/motif_HNRNPH3_978 new file mode 100644 index 0000000..bcdd63c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_978 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_978 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_979 b/resources/ATtRACT_hsa/motif_HNRNPH3_979 new file mode 100644 index 0000000..9ea135e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_979 @@ -0,0 +1,15 @@ +// +NA HNRNPH3_979 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_980 b/resources/ATtRACT_hsa/motif_HNRNPH3_980 new file mode 100644 index 0000000..6b6b778 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_980 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_980 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_981 b/resources/ATtRACT_hsa/motif_HNRNPH3_981 new file mode 100644 index 0000000..23c2eaa --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_981 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_981 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_982 b/resources/ATtRACT_hsa/motif_HNRNPH3_982 new file mode 100644 index 0000000..2c05974 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_982 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_982 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_983 b/resources/ATtRACT_hsa/motif_HNRNPH3_983 new file mode 100644 index 0000000..01838b1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_983 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_983 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_984 b/resources/ATtRACT_hsa/motif_HNRNPH3_984 new file mode 100644 index 0000000..77741f3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_984 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_984 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_985 b/resources/ATtRACT_hsa/motif_HNRNPH3_985 new file mode 100644 index 0000000..24e4846 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_985 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_985 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_986 b/resources/ATtRACT_hsa/motif_HNRNPH3_986 new file mode 100644 index 0000000..f7261c5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_986 @@ -0,0 +1,14 @@ +// +NA HNRNPH3_986 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_987 b/resources/ATtRACT_hsa/motif_HNRNPH3_987 new file mode 100644 index 0000000..24bc3a0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_987 @@ -0,0 +1,14 @@ +// +NA HNRNPH3_987 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_988 b/resources/ATtRACT_hsa/motif_HNRNPH3_988 new file mode 100644 index 0000000..7d582fd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_988 @@ -0,0 +1,14 @@ +// +NA HNRNPH3_988 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_989 b/resources/ATtRACT_hsa/motif_HNRNPH3_989 new file mode 100644 index 0000000..f0dee1e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_989 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_989 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPH3_990 b/resources/ATtRACT_hsa/motif_HNRNPH3_990 new file mode 100644 index 0000000..2ba6dfe --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPH3_990 @@ -0,0 +1,9 @@ +// +NA HNRNPH3_990 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1026 b/resources/ATtRACT_hsa/motif_HNRNPK_1026 new file mode 100644 index 0000000..6cfb5f5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1026 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1026 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1027 b/resources/ATtRACT_hsa/motif_HNRNPK_1027 new file mode 100644 index 0000000..7e24a67 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1027 @@ -0,0 +1,10 @@ +// +NA HNRNPK_1027 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1028 b/resources/ATtRACT_hsa/motif_HNRNPK_1028 new file mode 100644 index 0000000..a55f087 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1028 @@ -0,0 +1,13 @@ +// +NA HNRNPK_1028 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1029 b/resources/ATtRACT_hsa/motif_HNRNPK_1029 new file mode 100644 index 0000000..e672355 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1029 @@ -0,0 +1,12 @@ +// +NA HNRNPK_1029 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1031 b/resources/ATtRACT_hsa/motif_HNRNPK_1031 new file mode 100644 index 0000000..9e1ade8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1031 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1031 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1034 b/resources/ATtRACT_hsa/motif_HNRNPK_1034 new file mode 100644 index 0000000..9475fcf --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1034 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1034 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1035 b/resources/ATtRACT_hsa/motif_HNRNPK_1035 new file mode 100644 index 0000000..c02e1ef --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1035 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1035 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1036 b/resources/ATtRACT_hsa/motif_HNRNPK_1036 new file mode 100644 index 0000000..58d9ed8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1036 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1036 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1037 b/resources/ATtRACT_hsa/motif_HNRNPK_1037 new file mode 100644 index 0000000..b063d10 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1037 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1037 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1038 b/resources/ATtRACT_hsa/motif_HNRNPK_1038 new file mode 100644 index 0000000..52c21a2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1038 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1038 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1039 b/resources/ATtRACT_hsa/motif_HNRNPK_1039 new file mode 100644 index 0000000..3ea6ecb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1039 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1039 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1040 b/resources/ATtRACT_hsa/motif_HNRNPK_1040 new file mode 100644 index 0000000..0434f9a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1040 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1040 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1041 b/resources/ATtRACT_hsa/motif_HNRNPK_1041 new file mode 100644 index 0000000..8a891ff --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1041 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1041 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1042 b/resources/ATtRACT_hsa/motif_HNRNPK_1042 new file mode 100644 index 0000000..6e9bbc2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1042 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1042 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1043 b/resources/ATtRACT_hsa/motif_HNRNPK_1043 new file mode 100644 index 0000000..6cb5f5c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1043 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1043 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1044 b/resources/ATtRACT_hsa/motif_HNRNPK_1044 new file mode 100644 index 0000000..00c432c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1044 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1044 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_1045 b/resources/ATtRACT_hsa/motif_HNRNPK_1045 new file mode 100644 index 0000000..6e5af66 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_1045 @@ -0,0 +1,11 @@ +// +NA HNRNPK_1045 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_121 b/resources/ATtRACT_hsa/motif_HNRNPK_121 new file mode 100644 index 0000000..b64622c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_121 @@ -0,0 +1,11 @@ +// +NA HNRNPK_121 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_M026_0.6 b/resources/ATtRACT_hsa/motif_HNRNPK_M026_0.6 new file mode 100644 index 0000000..9082f87 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_M026_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPK_M026_0.6 + A C G T +01 10.98 85.603 1.708 1.708 +02 10.826 76.486 1.708 10.98 +03 85.603 1.708 1.708 10.98 +04 59.349 1.708 10.314 28.629 +05 31.276 50.242 4.099 14.383 +06 6.428 80.717 6.428 6.428 +07 8.805 73.585 8.805 8.805 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_s14 b/resources/ATtRACT_hsa/motif_HNRNPK_s14 new file mode 100644 index 0000000..0d80000 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_s14 @@ -0,0 +1,12 @@ +// +NA HNRNPK_s14 + A C G T +01 66.118 0.329 0.329 33.224 +02 0.329 99.013 0.329 0.329 +03 0.329 99.013 0.329 0.329 +04 0.329 99.013 0.329 0.329 +05 0.329 99.013 0.329 0.329 +06 0.329 99.013 0.329 0.329 +07 99.013 0.329 0.329 0.329 +08 33.224 33.224 0.329 33.224 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_s15 b/resources/ATtRACT_hsa/motif_HNRNPK_s15 new file mode 100644 index 0000000..5a1292e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_s15 @@ -0,0 +1,10 @@ +// +NA HNRNPK_s15 + A C G T +01 39.96 0.066 20.013 39.96 +02 0.066 99.801 0.066 0.066 +03 0.066 99.801 0.066 0.066 +04 0.066 99.801 0.066 0.066 +05 53.258 0.066 26.662 20.013 +06 39.96 20.013 6.715 33.311 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_s16 b/resources/ATtRACT_hsa/motif_HNRNPK_s16 new file mode 100644 index 0000000..9f31e4c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_s16 @@ -0,0 +1,11 @@ +// +NA HNRNPK_s16 + A C G T +01 16.722 0.166 16.722 66.391 +02 0.166 99.503 0.166 0.166 +03 0.166 99.503 0.166 0.166 +04 0.166 99.503 0.166 0.166 +05 0.166 99.503 0.166 0.166 +06 49.834 0.166 0.166 49.834 +07 66.391 0.166 0.166 33.278 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_s61 b/resources/ATtRACT_hsa/motif_HNRNPK_s61 new file mode 100644 index 0000000..c53eb98 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_s61 @@ -0,0 +1,16 @@ +// +NA HNRNPK_s61 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 97.115 0.962 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 0.962 97.115 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPK_s62 b/resources/ATtRACT_hsa/motif_HNRNPK_s62 new file mode 100644 index 0000000..3ba0ea0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPK_s62 @@ -0,0 +1,13 @@ +// +NA HNRNPK_s62 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPLL_1053 b/resources/ATtRACT_hsa/motif_HNRNPLL_1053 new file mode 100644 index 0000000..a0df0f8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPLL_1053 @@ -0,0 +1,13 @@ +// +NA HNRNPLL_1053 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPLL_1054 b/resources/ATtRACT_hsa/motif_HNRNPLL_1054 new file mode 100644 index 0000000..a3bbd94 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPLL_1054 @@ -0,0 +1,13 @@ +// +NA HNRNPLL_1054 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPLL_169 b/resources/ATtRACT_hsa/motif_HNRNPLL_169 new file mode 100644 index 0000000..fb1fd69 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPLL_169 @@ -0,0 +1,11 @@ +// +NA HNRNPLL_169 + A C G T +01 0.49 98.529 0.49 0.49 +02 98.529 0.49 0.49 0.49 +03 0.49 98.529 0.49 0.49 +04 0.49 49.51 0.49 49.51 +05 0.49 0.49 98.529 0.49 +06 0.49 98.529 0.49 0.49 +07 98.529 0.49 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPLL_M169_0.6 b/resources/ATtRACT_hsa/motif_HNRNPLL_M169_0.6 new file mode 100644 index 0000000..3fe9064 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPLL_M169_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPLL_M169_0.6 + A C G T +01 64.644 5.725 23.906 5.725 +02 1.004 96.989 1.004 1.004 +03 96.989 1.004 1.004 1.004 +04 18.549 52.036 9.241 20.175 +05 75.943 1.004 22.05 1.004 +06 1.004 96.989 1.004 1.004 +07 96.989 1.004 1.004 1.004 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPL_1046 b/resources/ATtRACT_hsa/motif_HNRNPL_1046 new file mode 100644 index 0000000..9b024a9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPL_1046 @@ -0,0 +1,8 @@ +// +NA HNRNPL_1046 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPL_1051 b/resources/ATtRACT_hsa/motif_HNRNPL_1051 new file mode 100644 index 0000000..d20caec --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPL_1051 @@ -0,0 +1,8 @@ +// +NA HNRNPL_1051 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPL_1052 b/resources/ATtRACT_hsa/motif_HNRNPL_1052 new file mode 100644 index 0000000..90ab552 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPL_1052 @@ -0,0 +1,13 @@ +// +NA HNRNPL_1052 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPL_M027_0.6 b/resources/ATtRACT_hsa/motif_HNRNPL_M027_0.6 new file mode 100644 index 0000000..b545867 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPL_M027_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPL_M027_0.6 + A C G T +01 73.756 14.679 5.783 5.783 +02 19.143 68.607 1.111 11.138 +03 96.666 1.111 1.111 1.111 +04 11.028 67.147 1.111 20.713 +05 88.413 1.111 1.111 9.364 +06 27.403 70.374 1.111 1.111 +07 71.636 21.398 3.483 3.483 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPL_M089_0.6 b/resources/ATtRACT_hsa/motif_HNRNPL_M089_0.6 new file mode 100644 index 0000000..eb2f119 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPL_M089_0.6 @@ -0,0 +1,11 @@ +// +NA HNRNPL_M089_0.6 + A C G T +01 94.125 1.958 1.958 1.958 +02 1.958 94.125 1.958 1.958 +03 94.125 1.958 1.958 1.958 +04 11.232 84.851 1.958 1.958 +05 47.71 11.232 39.099 1.958 +06 76.34 10.713 10.989 1.958 +07 36.142 27.089 27.72 9.049 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPL_s38 b/resources/ATtRACT_hsa/motif_HNRNPL_s38 new file mode 100644 index 0000000..856ffc9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPL_s38 @@ -0,0 +1,8 @@ +// +NA HNRNPL_s38 + A C G T +01 33.296 44.358 11.173 11.173 +02 55.42 44.358 0.111 0.111 +03 44.358 55.42 0.111 0.111 +04 33.296 44.358 11.173 11.173 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPM_1055 b/resources/ATtRACT_hsa/motif_HNRNPM_1055 new file mode 100644 index 0000000..3551db4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPM_1055 @@ -0,0 +1,11 @@ +// +NA HNRNPM_1055 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPM_1056 b/resources/ATtRACT_hsa/motif_HNRNPM_1056 new file mode 100644 index 0000000..1eefc2d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPM_1056 @@ -0,0 +1,11 @@ +// +NA HNRNPM_1056 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPU_1067 b/resources/ATtRACT_hsa/motif_HNRNPU_1067 new file mode 100644 index 0000000..7a0aded --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPU_1067 @@ -0,0 +1,11 @@ +// +NA HNRNPU_1067 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPU_1068 b/resources/ATtRACT_hsa/motif_HNRNPU_1068 new file mode 100644 index 0000000..4a9db9d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPU_1068 @@ -0,0 +1,11 @@ +// +NA HNRNPU_1068 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPU_1069 b/resources/ATtRACT_hsa/motif_HNRNPU_1069 new file mode 100644 index 0000000..4fa5e14 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPU_1069 @@ -0,0 +1,11 @@ +// +NA HNRNPU_1069 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPU_1070 b/resources/ATtRACT_hsa/motif_HNRNPU_1070 new file mode 100644 index 0000000..93d8ee1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPU_1070 @@ -0,0 +1,11 @@ +// +NA HNRNPU_1070 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPU_1071 b/resources/ATtRACT_hsa/motif_HNRNPU_1071 new file mode 100644 index 0000000..8cb1d62 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPU_1071 @@ -0,0 +1,11 @@ +// +NA HNRNPU_1071 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPU_1072 b/resources/ATtRACT_hsa/motif_HNRNPU_1072 new file mode 100644 index 0000000..1ab08da --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPU_1072 @@ -0,0 +1,11 @@ +// +NA HNRNPU_1072 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPU_1073 b/resources/ATtRACT_hsa/motif_HNRNPU_1073 new file mode 100644 index 0000000..d678453 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPU_1073 @@ -0,0 +1,11 @@ +// +NA HNRNPU_1073 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_HNRNPU_1074 b/resources/ATtRACT_hsa/motif_HNRNPU_1074 new file mode 100644 index 0000000..ee17005 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_HNRNPU_1074 @@ -0,0 +1,11 @@ +// +NA HNRNPU_1074 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_IFIH1_391 b/resources/ATtRACT_hsa/motif_IFIH1_391 new file mode 100644 index 0000000..87d8993 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_IFIH1_391 @@ -0,0 +1,10 @@ +// +NA IFIH1_391 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_IFIH1_400 b/resources/ATtRACT_hsa/motif_IFIH1_400 new file mode 100644 index 0000000..667f5f6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_IFIH1_400 @@ -0,0 +1,8 @@ +// +NA IFIH1_400 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_IFIH1_546 b/resources/ATtRACT_hsa/motif_IFIH1_546 new file mode 100644 index 0000000..6f6afed --- /dev/null +++ b/resources/ATtRACT_hsa/motif_IFIH1_546 @@ -0,0 +1,15 @@ +// +NA IFIH1_546 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_IGF2BP1_M296_0.6 b/resources/ATtRACT_hsa/motif_IGF2BP1_M296_0.6 new file mode 100644 index 0000000..194be21 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_IGF2BP1_M296_0.6 @@ -0,0 +1,15 @@ +// +NA IGF2BP1_M296_0.6 + A C G T +01 89.667 1.0 8.333 1.0 +02 89.667 1.0 1.0 8.333 +03 1.0 1.0 97.0 1.0 +04 1.0 97.0 1.0 1.0 +05 97.0 1.0 1.0 1.0 +06 1.0 73.0 1.0 25.0 +07 1.0 73.0 25.0 1.0 +08 1.0 97.0 1.0 1.0 +09 1.0 25.0 73.0 1.0 +10 1.0 9.091 1.0 88.909 +11 1.0 1.0 1.0 97.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_IGF2BP2_M032_0.6 b/resources/ATtRACT_hsa/motif_IGF2BP2_M032_0.6 new file mode 100644 index 0000000..530f6ec --- /dev/null +++ b/resources/ATtRACT_hsa/motif_IGF2BP2_M032_0.6 @@ -0,0 +1,11 @@ +// +NA IGF2BP2_M032_0.6 + A C G T +01 56.454 17.661 17.198 8.686 +02 39.978 52.07 3.976 3.976 +03 95.103 1.632 1.632 1.632 +04 50.703 19.921 1.632 27.744 +05 59.693 10.93 1.632 27.744 +06 10.93 85.805 1.632 1.632 +07 95.103 1.632 1.632 1.632 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_IGF2BP3_118 b/resources/ATtRACT_hsa/motif_IGF2BP3_118 new file mode 100644 index 0000000..84b8147 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_IGF2BP3_118 @@ -0,0 +1,8 @@ +// +NA IGF2BP3_118 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_IGF2BP3_M163_0.6 b/resources/ATtRACT_hsa/motif_IGF2BP3_M163_0.6 new file mode 100644 index 0000000..54cc3a1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_IGF2BP3_M163_0.6 @@ -0,0 +1,11 @@ +// +NA IGF2BP3_M163_0.6 + A C G T +01 71.339 16.111 6.275 6.275 +02 39.629 48.774 1.559 10.038 +03 78.481 9.922 1.559 10.038 +04 38.75 29.801 1.559 29.89 +05 57.599 10.952 1.559 29.89 +06 19.937 76.945 1.559 1.559 +07 86.339 10.544 1.559 1.559 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_IGHMBP2_327 b/resources/ATtRACT_hsa/motif_IGHMBP2_327 new file mode 100644 index 0000000..221f131 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_IGHMBP2_327 @@ -0,0 +1,12 @@ +// +NA IGHMBP2_327 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_IGHMBP2_581 b/resources/ATtRACT_hsa/motif_IGHMBP2_581 new file mode 100644 index 0000000..c9fbaeb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_IGHMBP2_581 @@ -0,0 +1,11 @@ +// +NA IGHMBP2_581 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS1_1155 b/resources/ATtRACT_hsa/motif_KHDRBS1_1155 new file mode 100644 index 0000000..b6af0cf --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS1_1155 @@ -0,0 +1,10 @@ +// +NA KHDRBS1_1155 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS1_1156 b/resources/ATtRACT_hsa/motif_KHDRBS1_1156 new file mode 100644 index 0000000..ac03580 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS1_1156 @@ -0,0 +1,10 @@ +// +NA KHDRBS1_1156 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS1_1157 b/resources/ATtRACT_hsa/motif_KHDRBS1_1157 new file mode 100644 index 0000000..ad0a9b0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS1_1157 @@ -0,0 +1,9 @@ +// +NA KHDRBS1_1157 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS1_1158 b/resources/ATtRACT_hsa/motif_KHDRBS1_1158 new file mode 100644 index 0000000..87baa32 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS1_1158 @@ -0,0 +1,11 @@ +// +NA KHDRBS1_1158 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS1_1159 b/resources/ATtRACT_hsa/motif_KHDRBS1_1159 new file mode 100644 index 0000000..0cfac03 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS1_1159 @@ -0,0 +1,11 @@ +// +NA KHDRBS1_1159 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS1_M160_0.6 b/resources/ATtRACT_hsa/motif_KHDRBS1_M160_0.6 new file mode 100644 index 0000000..c70912a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS1_M160_0.6 @@ -0,0 +1,11 @@ +// +NA KHDRBS1_M160_0.6 + A C G T +01 79.866 3.396 3.396 13.342 +02 0.975 0.975 0.975 97.076 +03 88.422 0.975 0.975 9.629 +04 97.076 0.975 0.975 0.975 +05 87.845 0.975 0.975 10.206 +06 89.944 3.352 3.352 3.352 +07 28.628 19.587 41.327 10.458 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS1_s33 b/resources/ATtRACT_hsa/motif_KHDRBS1_s33 new file mode 100644 index 0000000..4b73179 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS1_s33 @@ -0,0 +1,10 @@ +// +NA KHDRBS1_s33 + A C G T +01 66.118 0.329 0.329 33.224 +02 0.329 0.329 0.329 99.013 +03 0.329 0.329 0.329 99.013 +04 0.329 0.329 0.329 99.013 +05 99.013 0.329 0.329 0.329 +06 33.224 66.118 0.329 0.329 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS1_s34 b/resources/ATtRACT_hsa/motif_KHDRBS1_s34 new file mode 100644 index 0000000..a1be74e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS1_s34 @@ -0,0 +1,10 @@ +// +NA KHDRBS1_s34 + A C G T +01 14.347 42.756 14.347 28.551 +02 28.551 0.142 0.142 71.165 +03 99.574 0.142 0.142 0.142 +04 99.574 0.142 0.142 0.142 +05 99.574 0.142 0.142 0.142 +06 42.756 14.347 0.142 42.756 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS2_1242 b/resources/ATtRACT_hsa/motif_KHDRBS2_1242 new file mode 100644 index 0000000..9bfacaf --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS2_1242 @@ -0,0 +1,11 @@ +// +NA KHDRBS2_1242 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS2_M176_0.6 b/resources/ATtRACT_hsa/motif_KHDRBS2_M176_0.6 new file mode 100644 index 0000000..1861a27 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS2_M176_0.6 @@ -0,0 +1,11 @@ +// +NA KHDRBS2_M176_0.6 + A C G T +01 35.731 8.241 47.788 8.241 +02 86.857 10.817 1.163 1.163 +03 1.163 10.216 1.163 87.458 +04 78.405 1.163 1.163 19.269 +05 96.511 1.163 1.163 1.163 +06 87.497 1.163 1.163 10.177 +07 51.688 31.881 3.62 12.811 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS3_1243 b/resources/ATtRACT_hsa/motif_KHDRBS3_1243 new file mode 100644 index 0000000..03282e5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS3_1243 @@ -0,0 +1,11 @@ +// +NA KHDRBS3_1243 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS3_M033_0.6 b/resources/ATtRACT_hsa/motif_KHDRBS3_M033_0.6 new file mode 100644 index 0000000..aa82c85 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS3_M033_0.6 @@ -0,0 +1,12 @@ +// +NA KHDRBS3_M033_0.6 + A C G T +01 21.22 12.928 52.923 12.928 +02 96.977 1.008 1.008 1.008 +03 1.008 1.008 1.008 96.977 +04 96.977 1.008 1.008 1.008 +05 96.977 1.008 1.008 1.008 +06 96.977 1.008 1.008 1.008 +07 21.122 53.011 22.4 3.467 +08 23.373 31.465 32.082 13.08 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHDRBS3_s103 b/resources/ATtRACT_hsa/motif_KHDRBS3_s103 new file mode 100644 index 0000000..7807a4f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHDRBS3_s103 @@ -0,0 +1,11 @@ +// +NA KHDRBS3_s103 + A C G T +01 79.563 0.198 0.198 20.04 +02 39.881 0.198 20.04 39.881 +03 79.563 0.198 0.198 20.04 +04 59.722 0.198 0.198 39.881 +05 79.563 0.198 0.198 20.04 +06 99.405 0.198 0.198 0.198 +07 59.722 39.881 0.198 0.198 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1109 b/resources/ATtRACT_hsa/motif_KHSRP_1109 new file mode 100644 index 0000000..551b526 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1109 @@ -0,0 +1,10 @@ +// +NA KHSRP_1109 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1110 b/resources/ATtRACT_hsa/motif_KHSRP_1110 new file mode 100644 index 0000000..f60f4b1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1110 @@ -0,0 +1,16 @@ +// +NA KHSRP_1110 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1111 b/resources/ATtRACT_hsa/motif_KHSRP_1111 new file mode 100644 index 0000000..57de476 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1111 @@ -0,0 +1,10 @@ +// +NA KHSRP_1111 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1112 b/resources/ATtRACT_hsa/motif_KHSRP_1112 new file mode 100644 index 0000000..e484bf4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1112 @@ -0,0 +1,10 @@ +// +NA KHSRP_1112 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1113 b/resources/ATtRACT_hsa/motif_KHSRP_1113 new file mode 100644 index 0000000..5c2dc37 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1113 @@ -0,0 +1,10 @@ +// +NA KHSRP_1113 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1114 b/resources/ATtRACT_hsa/motif_KHSRP_1114 new file mode 100644 index 0000000..61015cd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1114 @@ -0,0 +1,9 @@ +// +NA KHSRP_1114 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1115 b/resources/ATtRACT_hsa/motif_KHSRP_1115 new file mode 100644 index 0000000..6a63665 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1115 @@ -0,0 +1,9 @@ +// +NA KHSRP_1115 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1116 b/resources/ATtRACT_hsa/motif_KHSRP_1116 new file mode 100644 index 0000000..dcce11e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1116 @@ -0,0 +1,9 @@ +// +NA KHSRP_1116 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1117 b/resources/ATtRACT_hsa/motif_KHSRP_1117 new file mode 100644 index 0000000..c548b40 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1117 @@ -0,0 +1,9 @@ +// +NA KHSRP_1117 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1118 b/resources/ATtRACT_hsa/motif_KHSRP_1118 new file mode 100644 index 0000000..d70e87f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1118 @@ -0,0 +1,10 @@ +// +NA KHSRP_1118 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1119 b/resources/ATtRACT_hsa/motif_KHSRP_1119 new file mode 100644 index 0000000..09e833e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1119 @@ -0,0 +1,10 @@ +// +NA KHSRP_1119 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_1120 b/resources/ATtRACT_hsa/motif_KHSRP_1120 new file mode 100644 index 0000000..77b5060 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_1120 @@ -0,0 +1,10 @@ +// +NA KHSRP_1120 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_12 b/resources/ATtRACT_hsa/motif_KHSRP_12 new file mode 100644 index 0000000..b5040f7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_12 @@ -0,0 +1,8 @@ +// +NA KHSRP_12 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_13 b/resources/ATtRACT_hsa/motif_KHSRP_13 new file mode 100644 index 0000000..7dc4139 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_13 @@ -0,0 +1,8 @@ +// +NA KHSRP_13 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_172 b/resources/ATtRACT_hsa/motif_KHSRP_172 new file mode 100644 index 0000000..5d5cc66 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_172 @@ -0,0 +1,8 @@ +// +NA KHSRP_172 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_175 b/resources/ATtRACT_hsa/motif_KHSRP_175 new file mode 100644 index 0000000..d85aac0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_175 @@ -0,0 +1,12 @@ +// +NA KHSRP_175 + A C G T +01 0.062 99.813 0.062 0.062 +02 25.0 25.0 25.0 25.0 +03 0.062 49.938 49.938 0.062 +04 0.062 99.813 0.062 0.062 +05 0.062 49.938 0.062 49.938 +06 0.062 0.062 0.062 99.813 +07 0.062 99.813 0.062 0.062 +08 0.062 99.813 0.062 0.062 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_184 b/resources/ATtRACT_hsa/motif_KHSRP_184 new file mode 100644 index 0000000..6dfb452 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_184 @@ -0,0 +1,9 @@ +// +NA KHSRP_184 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_28 b/resources/ATtRACT_hsa/motif_KHSRP_28 new file mode 100644 index 0000000..45a17b0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_28 @@ -0,0 +1,10 @@ +// +NA KHSRP_28 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_41 b/resources/ATtRACT_hsa/motif_KHSRP_41 new file mode 100644 index 0000000..40cdac8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_41 @@ -0,0 +1,12 @@ +// +NA KHSRP_41 + A C G T +01 25.0 25.0 25.0 25.0 +02 0.062 0.062 0.062 99.813 +03 0.062 0.062 99.813 0.062 +04 0.062 0.062 0.062 99.813 +05 49.938 0.062 49.938 0.062 +06 0.062 0.062 0.062 99.813 +07 49.938 0.062 49.938 0.062 +08 0.062 0.062 0.062 99.813 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_54 b/resources/ATtRACT_hsa/motif_KHSRP_54 new file mode 100644 index 0000000..b08cd2b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_54 @@ -0,0 +1,10 @@ +// +NA KHSRP_54 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_61 b/resources/ATtRACT_hsa/motif_KHSRP_61 new file mode 100644 index 0000000..ef20c10 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_61 @@ -0,0 +1,12 @@ +// +NA KHSRP_61 + A C G T +01 0.49 0.49 0.49 98.529 +02 98.529 0.49 0.49 0.49 +03 0.49 0.49 0.49 98.529 +04 0.49 0.49 0.49 98.529 +05 0.49 0.49 0.49 98.529 +06 98.529 0.49 0.49 0.49 +07 0.49 0.49 0.49 98.529 +08 49.51 0.49 0.49 49.51 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_63 b/resources/ATtRACT_hsa/motif_KHSRP_63 new file mode 100644 index 0000000..f8c77e0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_63 @@ -0,0 +1,10 @@ +// +NA KHSRP_63 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_67 b/resources/ATtRACT_hsa/motif_KHSRP_67 new file mode 100644 index 0000000..3de242e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_67 @@ -0,0 +1,8 @@ +// +NA KHSRP_67 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_KHSRP_81 b/resources/ATtRACT_hsa/motif_KHSRP_81 new file mode 100644 index 0000000..48b3c07 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_KHSRP_81 @@ -0,0 +1,12 @@ +// +NA KHSRP_81 + A C G T +01 0.248 0.248 0.248 99.257 +02 49.752 0.248 0.248 49.752 +03 0.248 0.248 0.248 99.257 +04 99.257 0.248 0.248 0.248 +05 0.248 0.248 0.248 99.257 +06 0.248 0.248 0.248 99.257 +07 0.248 0.248 0.248 99.257 +08 49.752 0.248 0.248 49.752 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_LIN28A_506 b/resources/ATtRACT_hsa/motif_LIN28A_506 new file mode 100644 index 0000000..af5de89 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_LIN28A_506 @@ -0,0 +1,11 @@ +// +NA LIN28A_506 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_LIN28A_M035_0.6 b/resources/ATtRACT_hsa/motif_LIN28A_M035_0.6 new file mode 100644 index 0000000..e0c7de1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_LIN28A_M035_0.6 @@ -0,0 +1,11 @@ +// +NA LIN28A_M035_0.6 + A C G T +01 30.401 38.74 10.936 19.924 +02 3.927 3.927 88.22 3.927 +03 3.927 3.927 88.22 3.927 +04 88.22 3.927 3.927 3.927 +05 1.552 1.552 95.345 1.552 +06 69.545 3.927 3.927 22.601 +07 71.99 6.255 15.499 6.255 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_LIN28A_M153_0.6 b/resources/ATtRACT_hsa/motif_LIN28A_M153_0.6 new file mode 100644 index 0000000..7d0d328 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_LIN28A_M153_0.6 @@ -0,0 +1,11 @@ +// +NA LIN28A_M153_0.6 + A C G T +01 11.211 57.585 11.211 19.993 +02 6.179 14.619 73.024 6.179 +03 9.502 9.982 79.01 1.506 +04 87.006 9.982 1.506 1.506 +05 1.506 9.982 87.006 1.506 +06 1.506 9.982 87.006 1.506 +07 44.444 14.454 34.992 6.11 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MATR3_M036_0.6 b/resources/ATtRACT_hsa/motif_MATR3_M036_0.6 new file mode 100644 index 0000000..49e21ff --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MATR3_M036_0.6 @@ -0,0 +1,11 @@ +// +NA MATR3_M036_0.6 + A C G T +01 45.838 36.72 8.721 8.721 +02 86.513 1.719 1.719 10.048 +03 10.065 1.719 1.719 86.496 +04 1.719 94.842 1.719 1.719 +05 1.719 1.719 1.719 94.842 +06 1.719 1.719 1.719 94.842 +07 17.717 8.788 64.706 8.788 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_1121 b/resources/ATtRACT_hsa/motif_MBNL1_1121 new file mode 100644 index 0000000..ee43e2b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_1121 @@ -0,0 +1,10 @@ +// +NA MBNL1_1121 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_1122 b/resources/ATtRACT_hsa/motif_MBNL1_1122 new file mode 100644 index 0000000..1f0c287 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_1122 @@ -0,0 +1,14 @@ +// +NA MBNL1_1122 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_1123 b/resources/ATtRACT_hsa/motif_MBNL1_1123 new file mode 100644 index 0000000..afb5547 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_1123 @@ -0,0 +1,10 @@ +// +NA MBNL1_1123 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_1124 b/resources/ATtRACT_hsa/motif_MBNL1_1124 new file mode 100644 index 0000000..f9fcafd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_1124 @@ -0,0 +1,13 @@ +// +NA MBNL1_1124 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_1125 b/resources/ATtRACT_hsa/motif_MBNL1_1125 new file mode 100644 index 0000000..adcea8f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_1125 @@ -0,0 +1,13 @@ +// +NA MBNL1_1125 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_1126 b/resources/ATtRACT_hsa/motif_MBNL1_1126 new file mode 100644 index 0000000..581881b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_1126 @@ -0,0 +1,14 @@ +// +NA MBNL1_1126 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_M037_0.6 b/resources/ATtRACT_hsa/motif_MBNL1_M037_0.6 new file mode 100644 index 0000000..8f1b947 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_M037_0.6 @@ -0,0 +1,11 @@ +// +NA MBNL1_M037_0.6 + A C G T +01 31.555 19.024 21.201 28.22 +02 0.862 11.84 86.436 0.862 +03 0.862 86.436 0.862 11.84 +04 0.862 0.862 0.862 97.413 +05 0.862 0.862 0.862 97.413 +06 11.557 3.295 81.853 3.295 +07 5.639 74.944 13.779 5.639 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_M320_0.6 b/resources/ATtRACT_hsa/motif_MBNL1_M320_0.6 new file mode 100644 index 0000000..4a74780 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_M320_0.6 @@ -0,0 +1,12 @@ +// +NA MBNL1_M320_0.6 + A C G T +01 0.031 49.969 0.031 49.969 +02 0.031 49.969 0.031 49.969 +03 0.031 49.969 0.031 49.969 +04 0.031 0.031 99.906 0.031 +05 0.031 99.906 0.031 0.031 +06 0.031 0.031 0.031 99.906 +07 0.031 0.031 49.969 49.969 +08 0.031 49.969 0.031 49.969 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_M320_0.6a b/resources/ATtRACT_hsa/motif_MBNL1_M320_0.6a new file mode 100644 index 0000000..0507149 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_M320_0.6a @@ -0,0 +1,8 @@ +// +NA MBNL1_M320_0.6a + A C G T +01 1.0 42.009 1.0 55.991 +02 1.0 0.457 97.543 1.0 +03 1.0 97.543 0.457 1.0 +04 1.0 19.635 1.0 78.365 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MBNL1_s30 b/resources/ATtRACT_hsa/motif_MBNL1_s30 new file mode 100644 index 0000000..7e2eed9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MBNL1_s30 @@ -0,0 +1,10 @@ +// +NA MBNL1_s30 + A C G T +01 22.502 29.995 17.507 29.995 +02 0.025 37.488 0.025 62.463 +03 0.025 0.025 99.925 0.025 +04 0.025 99.925 0.025 0.025 +05 0.025 27.498 0.025 72.453 +06 22.502 27.498 25.0 25.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MSI1_M040_0.6 b/resources/ATtRACT_hsa/motif_MSI1_M040_0.6 new file mode 100644 index 0000000..5dbc335 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MSI1_M040_0.6 @@ -0,0 +1,11 @@ +// +NA MSI1_M040_0.6 + A C G T +01 5.739 5.739 5.739 82.783 +02 96.827 1.058 1.058 1.058 +03 1.058 1.058 96.827 1.058 +04 12.409 10.38 11.598 65.613 +05 43.663 1.058 1.058 54.221 +06 55.923 3.41 37.258 3.41 +07 13.816 5.694 74.796 5.694 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_MSI1_M167_0.6 b/resources/ATtRACT_hsa/motif_MSI1_M167_0.6 new file mode 100644 index 0000000..87bb2b7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_MSI1_M167_0.6 @@ -0,0 +1,11 @@ +// +NA MSI1_M167_0.6 + A C G T +01 3.456 3.456 3.456 89.632 +02 96.692 1.103 1.103 1.103 +03 1.103 1.103 96.692 1.103 +04 11.071 10.067 20.211 58.651 +05 36.152 1.103 10.097 52.648 +06 56.358 5.773 32.096 5.773 +07 10.248 10.248 69.256 10.248 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NELFE_122 b/resources/ATtRACT_hsa/motif_NELFE_122 new file mode 100644 index 0000000..e295fd1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NELFE_122 @@ -0,0 +1,14 @@ +// +NA NELFE_122 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NELFE_21 b/resources/ATtRACT_hsa/motif_NELFE_21 new file mode 100644 index 0000000..4c747dd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NELFE_21 @@ -0,0 +1,14 @@ +// +NA NELFE_21 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NELFE_6 b/resources/ATtRACT_hsa/motif_NELFE_6 new file mode 100644 index 0000000..64b634c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NELFE_6 @@ -0,0 +1,14 @@ +// +NA NELFE_6 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NONO_185 b/resources/ATtRACT_hsa/motif_NONO_185 new file mode 100644 index 0000000..025554e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NONO_185 @@ -0,0 +1,13 @@ +// +NA NONO_185 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NONO_M307_0.6 b/resources/ATtRACT_hsa/motif_NONO_M307_0.6 new file mode 100644 index 0000000..e0274c0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NONO_M307_0.6 @@ -0,0 +1,9 @@ +// +NA NONO_M307_0.6 + A C G T +01 97.0 1.0 1.0 1.0 +02 1.0 1.0 97.0 1.0 +03 1.0 1.0 97.0 1.0 +04 1.0 1.0 97.0 1.0 +05 87.655 1.0 1.0 10.345 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_1127 b/resources/ATtRACT_hsa/motif_NOVA1_1127 new file mode 100644 index 0000000..e2d96b2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_1127 @@ -0,0 +1,11 @@ +// +NA NOVA1_1127 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_1128 b/resources/ATtRACT_hsa/motif_NOVA1_1128 new file mode 100644 index 0000000..13c3f90 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_1128 @@ -0,0 +1,11 @@ +// +NA NOVA1_1128 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_1129 b/resources/ATtRACT_hsa/motif_NOVA1_1129 new file mode 100644 index 0000000..d52b65d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_1129 @@ -0,0 +1,11 @@ +// +NA NOVA1_1129 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_1130 b/resources/ATtRACT_hsa/motif_NOVA1_1130 new file mode 100644 index 0000000..ec60b60 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_1130 @@ -0,0 +1,9 @@ +// +NA NOVA1_1130 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_1131 b/resources/ATtRACT_hsa/motif_NOVA1_1131 new file mode 100644 index 0000000..c252329 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_1131 @@ -0,0 +1,9 @@ +// +NA NOVA1_1131 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_1132 b/resources/ATtRACT_hsa/motif_NOVA1_1132 new file mode 100644 index 0000000..bd483e6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_1132 @@ -0,0 +1,9 @@ +// +NA NOVA1_1132 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_1378 b/resources/ATtRACT_hsa/motif_NOVA1_1378 new file mode 100644 index 0000000..2a6d77c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_1378 @@ -0,0 +1,12 @@ +// +NA NOVA1_1378 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_1394 b/resources/ATtRACT_hsa/motif_NOVA1_1394 new file mode 100644 index 0000000..3492cbb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_1394 @@ -0,0 +1,8 @@ +// +NA NOVA1_1394 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_440 b/resources/ATtRACT_hsa/motif_NOVA1_440 new file mode 100644 index 0000000..3d00ba2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_440 @@ -0,0 +1,11 @@ +// +NA NOVA1_440 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_459 b/resources/ATtRACT_hsa/motif_NOVA1_459 new file mode 100644 index 0000000..80e4d62 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_459 @@ -0,0 +1,9 @@ +// +NA NOVA1_459 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_64 b/resources/ATtRACT_hsa/motif_NOVA1_64 new file mode 100644 index 0000000..b1339d0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_64 @@ -0,0 +1,8 @@ +// +NA NOVA1_64 + A C G T +01 0.166 49.834 0.166 49.834 +02 0.166 99.503 0.166 0.166 +03 99.503 0.166 0.166 0.166 +04 0.166 33.278 33.278 33.278 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_99 b/resources/ATtRACT_hsa/motif_NOVA1_99 new file mode 100644 index 0000000..b38f105 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_99 @@ -0,0 +1,8 @@ +// +NA NOVA1_99 + A C G T +01 0.49 0.49 0.49 98.529 +02 0.49 98.529 0.49 0.49 +03 98.529 0.49 0.49 0.49 +04 0.49 49.51 0.49 49.51 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_s27 b/resources/ATtRACT_hsa/motif_NOVA1_s27 new file mode 100644 index 0000000..098b6e8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_s27 @@ -0,0 +1,10 @@ +// +NA NOVA1_s27 + A C G T +01 99.503 0.166 0.166 0.166 +02 16.722 16.722 16.722 49.834 +03 0.166 99.503 0.166 0.166 +04 99.503 0.166 0.166 0.166 +05 16.722 66.391 0.166 16.722 +06 0.166 99.503 0.166 0.166 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA1_s94 b/resources/ATtRACT_hsa/motif_NOVA1_s94 new file mode 100644 index 0000000..8f99a9b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA1_s94 @@ -0,0 +1,16 @@ +// +NA NOVA1_s94 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 97.115 0.962 0.962 +11 97.115 0.962 0.962 0.962 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA2_1133 b/resources/ATtRACT_hsa/motif_NOVA2_1133 new file mode 100644 index 0000000..b15487a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA2_1133 @@ -0,0 +1,9 @@ +// +NA NOVA2_1133 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA2_492 b/resources/ATtRACT_hsa/motif_NOVA2_492 new file mode 100644 index 0000000..0450a0a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA2_492 @@ -0,0 +1,11 @@ +// +NA NOVA2_492 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA2_564 b/resources/ATtRACT_hsa/motif_NOVA2_564 new file mode 100644 index 0000000..df784a5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA2_564 @@ -0,0 +1,15 @@ +// +NA NOVA2_564 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA2_M325_0.6 b/resources/ATtRACT_hsa/motif_NOVA2_M325_0.6 new file mode 100644 index 0000000..3f2ff7d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA2_M325_0.6 @@ -0,0 +1,20 @@ +// +NA NOVA2_M325_0.6 + A C G T +01 41.857 1.0 28.571 28.571 +02 1.0 42.857 55.143 1.0 +03 28.571 28.571 41.857 1.0 +04 1.0 1.0 14.286 83.714 +05 14.286 28.571 28.571 28.571 +06 42.857 28.571 14.286 14.286 +07 28.571 28.571 41.857 1.0 +08 14.286 57.143 14.286 14.286 +09 28.571 1.0 1.0 69.429 +10 1.0 1.0 1.0 97.0 +11 1.0 97.0 1.0 1.0 +12 97.0 1.0 1.0 1.0 +13 1.0 69.429 1.0 28.571 +14 28.571 56.143 14.286 1.0 +15 1.0 97.0 1.0 1.0 +16 1.0 97.0 1.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA2_s28 b/resources/ATtRACT_hsa/motif_NOVA2_s28 new file mode 100644 index 0000000..19c761c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA2_s28 @@ -0,0 +1,10 @@ +// +NA NOVA2_s28 + A C G T +01 99.503 0.166 0.166 0.166 +02 16.722 16.722 16.722 49.834 +03 0.166 99.503 0.166 0.166 +04 99.503 0.166 0.166 0.166 +05 16.722 66.391 0.166 16.722 +06 0.166 99.503 0.166 0.166 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA2_s29 b/resources/ATtRACT_hsa/motif_NOVA2_s29 new file mode 100644 index 0000000..1d1235e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA2_s29 @@ -0,0 +1,11 @@ +// +NA NOVA2_s29 + A C G T +01 0.329 0.329 99.013 0.329 +02 99.013 0.329 0.329 0.329 +03 0.329 0.329 99.013 0.329 +04 33.224 0.329 33.224 33.224 +05 0.329 99.013 0.329 0.329 +06 99.013 0.329 0.329 0.329 +07 0.329 0.329 0.329 99.013 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA2_s95 b/resources/ATtRACT_hsa/motif_NOVA2_s95 new file mode 100644 index 0000000..753b2df --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA2_s95 @@ -0,0 +1,11 @@ +// +NA NOVA2_s95 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NOVA2_s96 b/resources/ATtRACT_hsa/motif_NOVA2_s96 new file mode 100644 index 0000000..e68f15a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NOVA2_s96 @@ -0,0 +1,11 @@ +// +NA NOVA2_s96 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NUDT21_420 b/resources/ATtRACT_hsa/motif_NUDT21_420 new file mode 100644 index 0000000..6441717 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NUDT21_420 @@ -0,0 +1,9 @@ +// +NA NUDT21_420 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NUDT21_499 b/resources/ATtRACT_hsa/motif_NUDT21_499 new file mode 100644 index 0000000..cb2b2f8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NUDT21_499 @@ -0,0 +1,8 @@ +// +NA NUDT21_499 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NUDT21_575 b/resources/ATtRACT_hsa/motif_NUDT21_575 new file mode 100644 index 0000000..75e1683 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NUDT21_575 @@ -0,0 +1,9 @@ +// +NA NUDT21_575 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NXF1_418 b/resources/ATtRACT_hsa/motif_NXF1_418 new file mode 100644 index 0000000..f4d74f4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NXF1_418 @@ -0,0 +1,10 @@ +// +NA NXF1_418 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NXF1_454 b/resources/ATtRACT_hsa/motif_NXF1_454 new file mode 100644 index 0000000..1233cc3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NXF1_454 @@ -0,0 +1,8 @@ +// +NA NXF1_454 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_NXF1_572 b/resources/ATtRACT_hsa/motif_NXF1_572 new file mode 100644 index 0000000..a27cc27 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_NXF1_572 @@ -0,0 +1,8 @@ +// +NA NXF1_572 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_OAS1_385 b/resources/ATtRACT_hsa/motif_OAS1_385 new file mode 100644 index 0000000..0b687d9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_OAS1_385 @@ -0,0 +1,8 @@ +// +NA OAS1_385 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_OAS1_485 b/resources/ATtRACT_hsa/motif_OAS1_485 new file mode 100644 index 0000000..3330363 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_OAS1_485 @@ -0,0 +1,9 @@ +// +NA OAS1_485 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_OAS1_535 b/resources/ATtRACT_hsa/motif_OAS1_535 new file mode 100644 index 0000000..838656c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_OAS1_535 @@ -0,0 +1,10 @@ +// +NA OAS1_535 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPC1_416 b/resources/ATtRACT_hsa/motif_PABPC1_416 new file mode 100644 index 0000000..1685e67 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPC1_416 @@ -0,0 +1,12 @@ +// +NA PABPC1_416 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPC1_452 b/resources/ATtRACT_hsa/motif_PABPC1_452 new file mode 100644 index 0000000..9f00ad6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPC1_452 @@ -0,0 +1,11 @@ +// +NA PABPC1_452 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPC1_480 b/resources/ATtRACT_hsa/motif_PABPC1_480 new file mode 100644 index 0000000..dfbf5fb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPC1_480 @@ -0,0 +1,11 @@ +// +NA PABPC1_480 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPC1_M146_0.6 b/resources/ATtRACT_hsa/motif_PABPC1_M146_0.6 new file mode 100644 index 0000000..b6b61ff --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPC1_M146_0.6 @@ -0,0 +1,11 @@ +// +NA PABPC1_M146_0.6 + A C G T +01 75.758 8.081 8.081 8.081 +02 32.615 12.304 51.808 3.273 +03 97.443 0.852 0.852 0.852 +04 97.443 0.852 0.852 0.852 +05 97.443 0.852 0.852 0.852 +06 77.286 11.994 9.868 0.852 +07 68.729 20.357 0.852 10.061 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPC1_M275_0.6 b/resources/ATtRACT_hsa/motif_PABPC1_M275_0.6 new file mode 100644 index 0000000..02137d8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPC1_M275_0.6 @@ -0,0 +1,9 @@ +// +NA PABPC1_M275_0.6 + A C G T +01 97.0 1.0 1.0 1.0 +02 97.0 1.0 1.0 1.0 +03 97.0 1.0 1.0 1.0 +04 97.0 1.0 1.0 1.0 +05 97.0 1.0 1.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPC1_M349_0.6 b/resources/ATtRACT_hsa/motif_PABPC1_M349_0.6 new file mode 100644 index 0000000..57e5040 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPC1_M349_0.6 @@ -0,0 +1,11 @@ +// +NA PABPC1_M349_0.6 + A C G T +01 97.0 1.0 1.0 1.0 +02 14.286 83.714 1.0 1.0 +03 28.571 1.0 28.571 41.857 +04 83.714 1.0 14.286 1.0 +05 97.0 1.0 1.0 1.0 +06 1.0 28.571 14.286 56.143 +07 41.857 41.857 14.286 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPC3_M144_0.6 b/resources/ATtRACT_hsa/motif_PABPC3_M144_0.6 new file mode 100644 index 0000000..433975b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPC3_M144_0.6 @@ -0,0 +1,11 @@ +// +NA PABPC3_M144_0.6 + A C G T +01 26.422 8.282 57.014 8.282 +02 96.496 1.168 1.168 1.168 +03 96.496 1.168 1.168 1.168 +04 96.496 1.168 1.168 1.168 +05 96.496 1.168 1.168 1.168 +06 9.52 80.061 1.168 9.251 +07 32.957 54.963 6.04 6.04 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPC4_M042_0.6 b/resources/ATtRACT_hsa/motif_PABPC4_M042_0.6 new file mode 100644 index 0000000..0b1780e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPC4_M042_0.6 @@ -0,0 +1,11 @@ +// +NA PABPC4_M042_0.6 + A C G T +01 77.844 10.308 11.053 0.796 +02 79.096 10.388 9.72 0.796 +03 97.613 0.796 0.796 0.796 +04 97.613 0.796 0.796 0.796 +05 97.613 0.796 0.796 0.796 +06 68.474 11.102 10.375 10.049 +07 68.271 10.48 20.454 0.796 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPC5_M162_0.6 b/resources/ATtRACT_hsa/motif_PABPC5_M162_0.6 new file mode 100644 index 0000000..56a64a5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPC5_M162_0.6 @@ -0,0 +1,11 @@ +// +NA PABPC5_M162_0.6 + A C G T +01 75.494 8.169 8.169 8.169 +02 20.145 3.659 72.537 3.659 +03 96.003 1.332 1.332 1.332 +04 96.003 1.332 1.332 1.332 +05 96.003 1.332 1.332 1.332 +06 46.398 11.168 19.627 22.808 +07 11.106 18.049 1.332 69.512 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PABPN1_M148_0.6 b/resources/ATtRACT_hsa/motif_PABPN1_M148_0.6 new file mode 100644 index 0000000..02f2772 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PABPN1_M148_0.6 @@ -0,0 +1,11 @@ +// +NA PABPN1_M148_0.6 + A C G T +01 97.466 0.845 0.845 0.845 +02 28.309 0.845 70.002 0.845 +03 97.466 0.845 0.845 0.845 +04 97.466 0.845 0.845 0.845 +05 19.376 9.558 70.222 0.845 +06 97.466 0.845 0.845 0.845 +07 22.488 31.217 22.589 23.706 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_748 b/resources/ATtRACT_hsa/motif_PCBP1_748 new file mode 100644 index 0000000..cf94f8d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_748 @@ -0,0 +1,11 @@ +// +NA PCBP1_748 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_749 b/resources/ATtRACT_hsa/motif_PCBP1_749 new file mode 100644 index 0000000..7e815a8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_749 @@ -0,0 +1,12 @@ +// +NA PCBP1_749 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_750 b/resources/ATtRACT_hsa/motif_PCBP1_750 new file mode 100644 index 0000000..07cbbcc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_750 @@ -0,0 +1,12 @@ +// +NA PCBP1_750 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_751 b/resources/ATtRACT_hsa/motif_PCBP1_751 new file mode 100644 index 0000000..8ccfb6b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_751 @@ -0,0 +1,12 @@ +// +NA PCBP1_751 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_752 b/resources/ATtRACT_hsa/motif_PCBP1_752 new file mode 100644 index 0000000..6d4196a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_752 @@ -0,0 +1,12 @@ +// +NA PCBP1_752 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_753 b/resources/ATtRACT_hsa/motif_PCBP1_753 new file mode 100644 index 0000000..15daba1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_753 @@ -0,0 +1,12 @@ +// +NA PCBP1_753 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_754 b/resources/ATtRACT_hsa/motif_PCBP1_754 new file mode 100644 index 0000000..e665f97 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_754 @@ -0,0 +1,12 @@ +// +NA PCBP1_754 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_755 b/resources/ATtRACT_hsa/motif_PCBP1_755 new file mode 100644 index 0000000..51d519a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_755 @@ -0,0 +1,12 @@ +// +NA PCBP1_755 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_756 b/resources/ATtRACT_hsa/motif_PCBP1_756 new file mode 100644 index 0000000..b9f9464 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_756 @@ -0,0 +1,12 @@ +// +NA PCBP1_756 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_757 b/resources/ATtRACT_hsa/motif_PCBP1_757 new file mode 100644 index 0000000..08278ac --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_757 @@ -0,0 +1,12 @@ +// +NA PCBP1_757 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_758 b/resources/ATtRACT_hsa/motif_PCBP1_758 new file mode 100644 index 0000000..cf67a34 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_758 @@ -0,0 +1,12 @@ +// +NA PCBP1_758 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_759 b/resources/ATtRACT_hsa/motif_PCBP1_759 new file mode 100644 index 0000000..4fbbbc5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_759 @@ -0,0 +1,12 @@ +// +NA PCBP1_759 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_760 b/resources/ATtRACT_hsa/motif_PCBP1_760 new file mode 100644 index 0000000..5305a61 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_760 @@ -0,0 +1,11 @@ +// +NA PCBP1_760 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_762 b/resources/ATtRACT_hsa/motif_PCBP1_762 new file mode 100644 index 0000000..6ff4d79 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_762 @@ -0,0 +1,11 @@ +// +NA PCBP1_762 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_763 b/resources/ATtRACT_hsa/motif_PCBP1_763 new file mode 100644 index 0000000..e8d5d75 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_763 @@ -0,0 +1,11 @@ +// +NA PCBP1_763 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_764 b/resources/ATtRACT_hsa/motif_PCBP1_764 new file mode 100644 index 0000000..6233028 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_764 @@ -0,0 +1,11 @@ +// +NA PCBP1_764 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_765 b/resources/ATtRACT_hsa/motif_PCBP1_765 new file mode 100644 index 0000000..14b6fa2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_765 @@ -0,0 +1,11 @@ +// +NA PCBP1_765 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_766 b/resources/ATtRACT_hsa/motif_PCBP1_766 new file mode 100644 index 0000000..6ec8618 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_766 @@ -0,0 +1,10 @@ +// +NA PCBP1_766 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_767 b/resources/ATtRACT_hsa/motif_PCBP1_767 new file mode 100644 index 0000000..958c669 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_767 @@ -0,0 +1,10 @@ +// +NA PCBP1_767 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_768 b/resources/ATtRACT_hsa/motif_PCBP1_768 new file mode 100644 index 0000000..f4e7696 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_768 @@ -0,0 +1,10 @@ +// +NA PCBP1_768 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_769 b/resources/ATtRACT_hsa/motif_PCBP1_769 new file mode 100644 index 0000000..94e84c2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_769 @@ -0,0 +1,11 @@ +// +NA PCBP1_769 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_770 b/resources/ATtRACT_hsa/motif_PCBP1_770 new file mode 100644 index 0000000..825d996 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_770 @@ -0,0 +1,11 @@ +// +NA PCBP1_770 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_771 b/resources/ATtRACT_hsa/motif_PCBP1_771 new file mode 100644 index 0000000..75d0d0e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_771 @@ -0,0 +1,11 @@ +// +NA PCBP1_771 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_772 b/resources/ATtRACT_hsa/motif_PCBP1_772 new file mode 100644 index 0000000..38e9fdf --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_772 @@ -0,0 +1,11 @@ +// +NA PCBP1_772 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_773 b/resources/ATtRACT_hsa/motif_PCBP1_773 new file mode 100644 index 0000000..adfc7dd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_773 @@ -0,0 +1,11 @@ +// +NA PCBP1_773 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_774 b/resources/ATtRACT_hsa/motif_PCBP1_774 new file mode 100644 index 0000000..2a91a58 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_774 @@ -0,0 +1,11 @@ +// +NA PCBP1_774 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_775 b/resources/ATtRACT_hsa/motif_PCBP1_775 new file mode 100644 index 0000000..59fb941 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_775 @@ -0,0 +1,11 @@ +// +NA PCBP1_775 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_776 b/resources/ATtRACT_hsa/motif_PCBP1_776 new file mode 100644 index 0000000..ef05259 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_776 @@ -0,0 +1,11 @@ +// +NA PCBP1_776 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_93 b/resources/ATtRACT_hsa/motif_PCBP1_93 new file mode 100644 index 0000000..c085d38 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_93 @@ -0,0 +1,16 @@ +// +NA PCBP1_93 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP1_M177_0.6 b/resources/ATtRACT_hsa/motif_PCBP1_M177_0.6 new file mode 100644 index 0000000..098f1ed --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP1_M177_0.6 @@ -0,0 +1,11 @@ +// +NA PCBP1_M177_0.6 + A C G T +01 6.078 81.767 6.078 6.078 +02 10.2 86.866 1.467 1.467 +03 29.103 11.0 1.467 58.43 +04 37.375 1.467 1.467 59.692 +05 38.48 19.157 1.467 40.897 +06 1.467 95.6 1.467 1.467 +07 1.467 95.6 1.467 1.467 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_156 b/resources/ATtRACT_hsa/motif_PCBP2_156 new file mode 100644 index 0000000..bb72d7b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_156 @@ -0,0 +1,14 @@ +// +NA PCBP2_156 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_166 b/resources/ATtRACT_hsa/motif_PCBP2_166 new file mode 100644 index 0000000..558f51a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_166 @@ -0,0 +1,10 @@ +// +NA PCBP2_166 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_334 b/resources/ATtRACT_hsa/motif_PCBP2_334 new file mode 100644 index 0000000..63a2123 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_334 @@ -0,0 +1,8 @@ +// +NA PCBP2_334 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_370 b/resources/ATtRACT_hsa/motif_PCBP2_370 new file mode 100644 index 0000000..0229a8b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_370 @@ -0,0 +1,10 @@ +// +NA PCBP2_370 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_777 b/resources/ATtRACT_hsa/motif_PCBP2_777 new file mode 100644 index 0000000..49835eb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_777 @@ -0,0 +1,10 @@ +// +NA PCBP2_777 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_778 b/resources/ATtRACT_hsa/motif_PCBP2_778 new file mode 100644 index 0000000..1129536 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_778 @@ -0,0 +1,11 @@ +// +NA PCBP2_778 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_779 b/resources/ATtRACT_hsa/motif_PCBP2_779 new file mode 100644 index 0000000..1dc3d09 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_779 @@ -0,0 +1,12 @@ +// +NA PCBP2_779 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_780 b/resources/ATtRACT_hsa/motif_PCBP2_780 new file mode 100644 index 0000000..cec9e39 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_780 @@ -0,0 +1,12 @@ +// +NA PCBP2_780 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_781 b/resources/ATtRACT_hsa/motif_PCBP2_781 new file mode 100644 index 0000000..774b026 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_781 @@ -0,0 +1,12 @@ +// +NA PCBP2_781 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_782 b/resources/ATtRACT_hsa/motif_PCBP2_782 new file mode 100644 index 0000000..6548de2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_782 @@ -0,0 +1,12 @@ +// +NA PCBP2_782 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_783 b/resources/ATtRACT_hsa/motif_PCBP2_783 new file mode 100644 index 0000000..68b8cd7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_783 @@ -0,0 +1,12 @@ +// +NA PCBP2_783 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_784 b/resources/ATtRACT_hsa/motif_PCBP2_784 new file mode 100644 index 0000000..779a5ed --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_784 @@ -0,0 +1,12 @@ +// +NA PCBP2_784 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_785 b/resources/ATtRACT_hsa/motif_PCBP2_785 new file mode 100644 index 0000000..b0a053e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_785 @@ -0,0 +1,12 @@ +// +NA PCBP2_785 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_786 b/resources/ATtRACT_hsa/motif_PCBP2_786 new file mode 100644 index 0000000..75516ac --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_786 @@ -0,0 +1,12 @@ +// +NA PCBP2_786 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_787 b/resources/ATtRACT_hsa/motif_PCBP2_787 new file mode 100644 index 0000000..eaf854d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_787 @@ -0,0 +1,12 @@ +// +NA PCBP2_787 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_788 b/resources/ATtRACT_hsa/motif_PCBP2_788 new file mode 100644 index 0000000..41ab643 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_788 @@ -0,0 +1,12 @@ +// +NA PCBP2_788 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_789 b/resources/ATtRACT_hsa/motif_PCBP2_789 new file mode 100644 index 0000000..70992d6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_789 @@ -0,0 +1,12 @@ +// +NA PCBP2_789 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_790 b/resources/ATtRACT_hsa/motif_PCBP2_790 new file mode 100644 index 0000000..702ec3f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_790 @@ -0,0 +1,11 @@ +// +NA PCBP2_790 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_791 b/resources/ATtRACT_hsa/motif_PCBP2_791 new file mode 100644 index 0000000..9089700 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_791 @@ -0,0 +1,11 @@ +// +NA PCBP2_791 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_792 b/resources/ATtRACT_hsa/motif_PCBP2_792 new file mode 100644 index 0000000..db4a5bb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_792 @@ -0,0 +1,10 @@ +// +NA PCBP2_792 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_793 b/resources/ATtRACT_hsa/motif_PCBP2_793 new file mode 100644 index 0000000..99d03d7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_793 @@ -0,0 +1,10 @@ +// +NA PCBP2_793 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_794 b/resources/ATtRACT_hsa/motif_PCBP2_794 new file mode 100644 index 0000000..6c26195 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_794 @@ -0,0 +1,10 @@ +// +NA PCBP2_794 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_795 b/resources/ATtRACT_hsa/motif_PCBP2_795 new file mode 100644 index 0000000..95918a9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_795 @@ -0,0 +1,11 @@ +// +NA PCBP2_795 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_796 b/resources/ATtRACT_hsa/motif_PCBP2_796 new file mode 100644 index 0000000..c358eb7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_796 @@ -0,0 +1,11 @@ +// +NA PCBP2_796 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_797 b/resources/ATtRACT_hsa/motif_PCBP2_797 new file mode 100644 index 0000000..308b1f6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_797 @@ -0,0 +1,11 @@ +// +NA PCBP2_797 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_798 b/resources/ATtRACT_hsa/motif_PCBP2_798 new file mode 100644 index 0000000..1d2e2e6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_798 @@ -0,0 +1,11 @@ +// +NA PCBP2_798 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_799 b/resources/ATtRACT_hsa/motif_PCBP2_799 new file mode 100644 index 0000000..2f36176 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_799 @@ -0,0 +1,10 @@ +// +NA PCBP2_799 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_800 b/resources/ATtRACT_hsa/motif_PCBP2_800 new file mode 100644 index 0000000..236d5c7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_800 @@ -0,0 +1,14 @@ +// +NA PCBP2_800 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PCBP2_M043_0.6 b/resources/ATtRACT_hsa/motif_PCBP2_M043_0.6 new file mode 100644 index 0000000..ce5d93e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PCBP2_M043_0.6 @@ -0,0 +1,11 @@ +// +NA PCBP2_M043_0.6 + A C G T +01 4.632 77.929 4.632 12.807 +02 2.414 76.361 2.414 18.81 +03 2.414 31.133 2.414 64.038 +04 10.562 31.133 2.414 55.89 +05 10.804 73.492 2.414 13.289 +06 2.414 92.757 2.414 2.414 +07 15.797 62.549 6.806 14.848 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PHAX_472 b/resources/ATtRACT_hsa/motif_PHAX_472 new file mode 100644 index 0000000..4ede79a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PHAX_472 @@ -0,0 +1,8 @@ +// +NA PHAX_472 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PIWIL1_508 b/resources/ATtRACT_hsa/motif_PIWIL1_508 new file mode 100644 index 0000000..d09c362 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PIWIL1_508 @@ -0,0 +1,8 @@ +// +NA PIWIL1_508 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PPIE_20 b/resources/ATtRACT_hsa/motif_PPIE_20 new file mode 100644 index 0000000..990f42f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PPIE_20 @@ -0,0 +1,10 @@ +// +NA PPIE_20 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PPIE_36 b/resources/ATtRACT_hsa/motif_PPIE_36 new file mode 100644 index 0000000..95767dd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PPIE_36 @@ -0,0 +1,10 @@ +// +NA PPIE_36 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PPIE_45 b/resources/ATtRACT_hsa/motif_PPIE_45 new file mode 100644 index 0000000..642a33a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PPIE_45 @@ -0,0 +1,10 @@ +// +NA PPIE_45 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PPIE_75 b/resources/ATtRACT_hsa/motif_PPIE_75 new file mode 100644 index 0000000..a09e68f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PPIE_75 @@ -0,0 +1,10 @@ +// +NA PPIE_75 + A C G T +01 49.984 0.016 0.016 49.984 +02 49.984 0.016 0.016 49.984 +03 49.984 0.016 0.016 49.984 +04 49.984 0.016 0.016 49.984 +05 49.984 0.016 0.016 49.984 +06 49.984 0.016 0.016 49.984 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PPIE_89 b/resources/ATtRACT_hsa/motif_PPIE_89 new file mode 100644 index 0000000..4bc3ad6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PPIE_89 @@ -0,0 +1,10 @@ +// +NA PPIE_89 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PPRC1_M044_0.6 b/resources/ATtRACT_hsa/motif_PPRC1_M044_0.6 new file mode 100644 index 0000000..2a76c32 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PPRC1_M044_0.6 @@ -0,0 +1,11 @@ +// +NA PPRC1_M044_0.6 + A C G T +01 8.697 36.084 46.522 8.697 +02 1.851 57.263 29.71 11.176 +03 1.851 20.59 75.709 1.851 +04 1.851 94.448 1.851 1.851 +05 1.851 10.971 85.328 1.851 +06 1.851 85.679 10.619 1.851 +07 6.496 34.01 52.999 6.496 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_100 b/resources/ATtRACT_hsa/motif_PTBP1_100 new file mode 100644 index 0000000..65b88b0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_100 @@ -0,0 +1,14 @@ +// +NA PTBP1_100 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1000 b/resources/ATtRACT_hsa/motif_PTBP1_1000 new file mode 100644 index 0000000..446f6e6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1000 @@ -0,0 +1,10 @@ +// +NA PTBP1_1000 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1001 b/resources/ATtRACT_hsa/motif_PTBP1_1001 new file mode 100644 index 0000000..42e97c4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1001 @@ -0,0 +1,10 @@ +// +NA PTBP1_1001 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1002 b/resources/ATtRACT_hsa/motif_PTBP1_1002 new file mode 100644 index 0000000..a37367d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1002 @@ -0,0 +1,12 @@ +// +NA PTBP1_1002 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1003 b/resources/ATtRACT_hsa/motif_PTBP1_1003 new file mode 100644 index 0000000..c3c8455 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1003 @@ -0,0 +1,11 @@ +// +NA PTBP1_1003 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1004 b/resources/ATtRACT_hsa/motif_PTBP1_1004 new file mode 100644 index 0000000..1062080 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1004 @@ -0,0 +1,10 @@ +// +NA PTBP1_1004 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1006 b/resources/ATtRACT_hsa/motif_PTBP1_1006 new file mode 100644 index 0000000..7c3262a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1006 @@ -0,0 +1,10 @@ +// +NA PTBP1_1006 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1008 b/resources/ATtRACT_hsa/motif_PTBP1_1008 new file mode 100644 index 0000000..28ca13a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1008 @@ -0,0 +1,10 @@ +// +NA PTBP1_1008 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1009 b/resources/ATtRACT_hsa/motif_PTBP1_1009 new file mode 100644 index 0000000..e21f361 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1009 @@ -0,0 +1,13 @@ +// +NA PTBP1_1009 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1011 b/resources/ATtRACT_hsa/motif_PTBP1_1011 new file mode 100644 index 0000000..f34ff05 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1011 @@ -0,0 +1,15 @@ +// +NA PTBP1_1011 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 97.115 0.962 0.962 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1012 b/resources/ATtRACT_hsa/motif_PTBP1_1012 new file mode 100644 index 0000000..32f0d86 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1012 @@ -0,0 +1,15 @@ +// +NA PTBP1_1012 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1013 b/resources/ATtRACT_hsa/motif_PTBP1_1013 new file mode 100644 index 0000000..b75c236 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1013 @@ -0,0 +1,15 @@ +// +NA PTBP1_1013 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1014 b/resources/ATtRACT_hsa/motif_PTBP1_1014 new file mode 100644 index 0000000..9456ede --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1014 @@ -0,0 +1,11 @@ +// +NA PTBP1_1014 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1015 b/resources/ATtRACT_hsa/motif_PTBP1_1015 new file mode 100644 index 0000000..465bfe0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1015 @@ -0,0 +1,11 @@ +// +NA PTBP1_1015 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1016 b/resources/ATtRACT_hsa/motif_PTBP1_1016 new file mode 100644 index 0000000..f6c9c93 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1016 @@ -0,0 +1,11 @@ +// +NA PTBP1_1016 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1017 b/resources/ATtRACT_hsa/motif_PTBP1_1017 new file mode 100644 index 0000000..131842f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1017 @@ -0,0 +1,11 @@ +// +NA PTBP1_1017 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1018 b/resources/ATtRACT_hsa/motif_PTBP1_1018 new file mode 100644 index 0000000..f165a40 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1018 @@ -0,0 +1,11 @@ +// +NA PTBP1_1018 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1019 b/resources/ATtRACT_hsa/motif_PTBP1_1019 new file mode 100644 index 0000000..45be27a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1019 @@ -0,0 +1,9 @@ +// +NA PTBP1_1019 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1020 b/resources/ATtRACT_hsa/motif_PTBP1_1020 new file mode 100644 index 0000000..b702467 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1020 @@ -0,0 +1,9 @@ +// +NA PTBP1_1020 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1021 b/resources/ATtRACT_hsa/motif_PTBP1_1021 new file mode 100644 index 0000000..256788e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1021 @@ -0,0 +1,9 @@ +// +NA PTBP1_1021 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1022 b/resources/ATtRACT_hsa/motif_PTBP1_1022 new file mode 100644 index 0000000..d1b2023 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1022 @@ -0,0 +1,12 @@ +// +NA PTBP1_1022 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1023 b/resources/ATtRACT_hsa/motif_PTBP1_1023 new file mode 100644 index 0000000..f261a35 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1023 @@ -0,0 +1,12 @@ +// +NA PTBP1_1023 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1024 b/resources/ATtRACT_hsa/motif_PTBP1_1024 new file mode 100644 index 0000000..56feacc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1024 @@ -0,0 +1,13 @@ +// +NA PTBP1_1024 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1025 b/resources/ATtRACT_hsa/motif_PTBP1_1025 new file mode 100644 index 0000000..8bf3808 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1025 @@ -0,0 +1,10 @@ +// +NA PTBP1_1025 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_105 b/resources/ATtRACT_hsa/motif_PTBP1_105 new file mode 100644 index 0000000..eb5a0d6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_105 @@ -0,0 +1,12 @@ +// +NA PTBP1_105 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_11 b/resources/ATtRACT_hsa/motif_PTBP1_11 new file mode 100644 index 0000000..6a90d47 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_11 @@ -0,0 +1,8 @@ +// +NA PTBP1_11 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_117 b/resources/ATtRACT_hsa/motif_PTBP1_117 new file mode 100644 index 0000000..1eb373f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_117 @@ -0,0 +1,9 @@ +// +NA PTBP1_117 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1314 b/resources/ATtRACT_hsa/motif_PTBP1_1314 new file mode 100644 index 0000000..bb4e81b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1314 @@ -0,0 +1,13 @@ +// +NA PTBP1_1314 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_133 b/resources/ATtRACT_hsa/motif_PTBP1_133 new file mode 100644 index 0000000..39b92e3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_133 @@ -0,0 +1,10 @@ +// +NA PTBP1_133 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1340 b/resources/ATtRACT_hsa/motif_PTBP1_1340 new file mode 100644 index 0000000..6f9e8c8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1340 @@ -0,0 +1,11 @@ +// +NA PTBP1_1340 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_136 b/resources/ATtRACT_hsa/motif_PTBP1_136 new file mode 100644 index 0000000..44a8983 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_136 @@ -0,0 +1,9 @@ +// +NA PTBP1_136 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1368 b/resources/ATtRACT_hsa/motif_PTBP1_1368 new file mode 100644 index 0000000..9f23a16 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1368 @@ -0,0 +1,12 @@ +// +NA PTBP1_1368 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_1398 b/resources/ATtRACT_hsa/motif_PTBP1_1398 new file mode 100644 index 0000000..9e436af --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_1398 @@ -0,0 +1,10 @@ +// +NA PTBP1_1398 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_143 b/resources/ATtRACT_hsa/motif_PTBP1_143 new file mode 100644 index 0000000..dc08cda --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_143 @@ -0,0 +1,9 @@ +// +NA PTBP1_143 + A C G T +01 0.031 49.969 0.031 49.969 +02 0.031 99.906 0.031 0.031 +03 0.031 0.031 0.031 99.906 +04 25.0 25.0 25.0 25.0 +05 25.0 25.0 25.0 25.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_165 b/resources/ATtRACT_hsa/motif_PTBP1_165 new file mode 100644 index 0000000..8a531b7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_165 @@ -0,0 +1,8 @@ +// +NA PTBP1_165 + A C G T +01 0.062 99.813 0.062 0.062 +02 0.062 0.062 0.062 99.813 +03 25.0 25.0 25.0 25.0 +04 25.0 25.0 25.0 25.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_25 b/resources/ATtRACT_hsa/motif_PTBP1_25 new file mode 100644 index 0000000..35bbfd2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_25 @@ -0,0 +1,13 @@ +// +NA PTBP1_25 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_31 b/resources/ATtRACT_hsa/motif_PTBP1_31 new file mode 100644 index 0000000..87c7dff --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_31 @@ -0,0 +1,8 @@ +// +NA PTBP1_31 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_380 b/resources/ATtRACT_hsa/motif_PTBP1_380 new file mode 100644 index 0000000..8c38316 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_380 @@ -0,0 +1,10 @@ +// +NA PTBP1_380 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_489 b/resources/ATtRACT_hsa/motif_PTBP1_489 new file mode 100644 index 0000000..235a780 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_489 @@ -0,0 +1,8 @@ +// +NA PTBP1_489 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_51 b/resources/ATtRACT_hsa/motif_PTBP1_51 new file mode 100644 index 0000000..88f2634 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_51 @@ -0,0 +1,8 @@ +// +NA PTBP1_51 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_539 b/resources/ATtRACT_hsa/motif_PTBP1_539 new file mode 100644 index 0000000..fb4c822 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_539 @@ -0,0 +1,9 @@ +// +NA PTBP1_539 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_59 b/resources/ATtRACT_hsa/motif_PTBP1_59 new file mode 100644 index 0000000..8937eaa --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_59 @@ -0,0 +1,9 @@ +// +NA PTBP1_59 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_71 b/resources/ATtRACT_hsa/motif_PTBP1_71 new file mode 100644 index 0000000..b98ec89 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_71 @@ -0,0 +1,12 @@ +// +NA PTBP1_71 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_8 b/resources/ATtRACT_hsa/motif_PTBP1_8 new file mode 100644 index 0000000..0704d71 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_8 @@ -0,0 +1,9 @@ +// +NA PTBP1_8 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_991 b/resources/ATtRACT_hsa/motif_PTBP1_991 new file mode 100644 index 0000000..97d5ffa --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_991 @@ -0,0 +1,11 @@ +// +NA PTBP1_991 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_992 b/resources/ATtRACT_hsa/motif_PTBP1_992 new file mode 100644 index 0000000..e9a10d2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_992 @@ -0,0 +1,10 @@ +// +NA PTBP1_992 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_993 b/resources/ATtRACT_hsa/motif_PTBP1_993 new file mode 100644 index 0000000..d8d73b9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_993 @@ -0,0 +1,12 @@ +// +NA PTBP1_993 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_994 b/resources/ATtRACT_hsa/motif_PTBP1_994 new file mode 100644 index 0000000..0efe8e9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_994 @@ -0,0 +1,13 @@ +// +NA PTBP1_994 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_995 b/resources/ATtRACT_hsa/motif_PTBP1_995 new file mode 100644 index 0000000..7bdc781 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_995 @@ -0,0 +1,16 @@ +// +NA PTBP1_995 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 97.115 0.962 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +12 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_996 b/resources/ATtRACT_hsa/motif_PTBP1_996 new file mode 100644 index 0000000..331263c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_996 @@ -0,0 +1,12 @@ +// +NA PTBP1_996 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_997 b/resources/ATtRACT_hsa/motif_PTBP1_997 new file mode 100644 index 0000000..6b843ad --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_997 @@ -0,0 +1,10 @@ +// +NA PTBP1_997 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_998 b/resources/ATtRACT_hsa/motif_PTBP1_998 new file mode 100644 index 0000000..05d2f0e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_998 @@ -0,0 +1,10 @@ +// +NA PTBP1_998 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_999 b/resources/ATtRACT_hsa/motif_PTBP1_999 new file mode 100644 index 0000000..4c2c16e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_999 @@ -0,0 +1,10 @@ +// +NA PTBP1_999 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_M227_0.6 b/resources/ATtRACT_hsa/motif_PTBP1_M227_0.6 new file mode 100644 index 0000000..d560ae8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_M227_0.6 @@ -0,0 +1,11 @@ +// +NA PTBP1_M227_0.6 + A C G T +01 24.217 53.876 6.2 15.707 +02 3.864 21.888 3.864 70.385 +03 1.53 1.53 1.53 95.41 +04 1.53 1.53 1.53 95.41 +05 1.53 10.917 1.53 86.023 +06 1.53 67.567 1.53 29.373 +07 6.208 15.806 6.208 71.778 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_s100 b/resources/ATtRACT_hsa/motif_PTBP1_s100 new file mode 100644 index 0000000..1003fe9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_s100 @@ -0,0 +1,11 @@ +// +NA PTBP1_s100 + A C G T +01 0.198 20.04 0.198 79.563 +02 0.198 39.881 0.198 59.722 +03 20.04 0.198 0.198 79.563 +04 20.04 39.881 0.198 39.881 +05 0.198 20.04 0.198 79.563 +06 0.198 39.881 0.198 59.722 +07 0.198 0.198 0.198 99.405 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_s12 b/resources/ATtRACT_hsa/motif_PTBP1_s12 new file mode 100644 index 0000000..13b454d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_s12 @@ -0,0 +1,10 @@ +// +NA PTBP1_s12 + A C G T +01 12.562 49.876 12.562 25.0 +02 0.124 0.124 0.124 99.627 +03 0.124 99.627 0.124 0.124 +04 0.124 0.124 0.124 99.627 +05 0.124 0.124 0.124 99.627 +06 25.0 37.438 25.0 12.562 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP1_s80 b/resources/ATtRACT_hsa/motif_PTBP1_s80 new file mode 100644 index 0000000..537e997 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP1_s80 @@ -0,0 +1,11 @@ +// +NA PTBP1_s80 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PTBP2_1134 b/resources/ATtRACT_hsa/motif_PTBP2_1134 new file mode 100644 index 0000000..da1b306 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PTBP2_1134 @@ -0,0 +1,10 @@ +// +NA PTBP2_1134 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_114 b/resources/ATtRACT_hsa/motif_PUM1_114 new file mode 100644 index 0000000..72040c7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_114 @@ -0,0 +1,12 @@ +// +NA PUM1_114 + A C G T +01 0.329 0.329 0.329 99.013 +02 0.329 0.329 99.013 0.329 +03 0.329 0.329 0.329 99.013 +04 99.013 0.329 0.329 0.329 +05 33.224 33.224 0.329 33.224 +06 99.013 0.329 0.329 0.329 +07 0.329 0.329 0.329 99.013 +08 99.013 0.329 0.329 0.329 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_137 b/resources/ATtRACT_hsa/motif_PUM1_137 new file mode 100644 index 0000000..854321c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_137 @@ -0,0 +1,16 @@ +// +NA PUM1_137 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 0.962 97.115 +11 97.115 0.962 0.962 0.962 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_151 b/resources/ATtRACT_hsa/motif_PUM1_151 new file mode 100644 index 0000000..0e3ec5a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_151 @@ -0,0 +1,12 @@ +// +NA PUM1_151 + A C G T +01 0.329 0.329 0.329 99.013 +02 0.329 0.329 99.013 0.329 +03 0.329 0.329 0.329 99.013 +04 99.013 0.329 0.329 0.329 +05 33.224 33.224 0.329 33.224 +06 99.013 0.329 0.329 0.329 +07 0.329 0.329 0.329 99.013 +08 99.013 0.329 0.329 0.329 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_337 b/resources/ATtRACT_hsa/motif_PUM1_337 new file mode 100644 index 0000000..d1fe3fd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_337 @@ -0,0 +1,12 @@ +// +NA PUM1_337 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_339 b/resources/ATtRACT_hsa/motif_PUM1_339 new file mode 100644 index 0000000..d28411c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_339 @@ -0,0 +1,12 @@ +// +NA PUM1_339 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_343 b/resources/ATtRACT_hsa/motif_PUM1_343 new file mode 100644 index 0000000..9e66b6e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_343 @@ -0,0 +1,13 @@ +// +NA PUM1_343 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_389 b/resources/ATtRACT_hsa/motif_PUM1_389 new file mode 100644 index 0000000..7f365fa --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_389 @@ -0,0 +1,12 @@ +// +NA PUM1_389 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_406 b/resources/ATtRACT_hsa/motif_PUM1_406 new file mode 100644 index 0000000..08d2fb9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_406 @@ -0,0 +1,12 @@ +// +NA PUM1_406 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_419 b/resources/ATtRACT_hsa/motif_PUM1_419 new file mode 100644 index 0000000..c2ba982 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_419 @@ -0,0 +1,11 @@ +// +NA PUM1_419 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_484 b/resources/ATtRACT_hsa/motif_PUM1_484 new file mode 100644 index 0000000..1416f2c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_484 @@ -0,0 +1,13 @@ +// +NA PUM1_484 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_533 b/resources/ATtRACT_hsa/motif_PUM1_533 new file mode 100644 index 0000000..649b125 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_533 @@ -0,0 +1,12 @@ +// +NA PUM1_533 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_545 b/resources/ATtRACT_hsa/motif_PUM1_545 new file mode 100644 index 0000000..6041f9e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_545 @@ -0,0 +1,11 @@ +// +NA PUM1_545 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_569 b/resources/ATtRACT_hsa/motif_PUM1_569 new file mode 100644 index 0000000..ec30b77 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_569 @@ -0,0 +1,11 @@ +// +NA PUM1_569 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_74 b/resources/ATtRACT_hsa/motif_PUM1_74 new file mode 100644 index 0000000..ab083d7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_74 @@ -0,0 +1,15 @@ +// +NA PUM1_74 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 97.115 0.962 0.962 0.962 +11 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM1_82 b/resources/ATtRACT_hsa/motif_PUM1_82 new file mode 100644 index 0000000..c450199 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM1_82 @@ -0,0 +1,15 @@ +// +NA PUM1_82 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 0.962 97.115 +11 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM2_107 b/resources/ATtRACT_hsa/motif_PUM2_107 new file mode 100644 index 0000000..56c399f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM2_107 @@ -0,0 +1,12 @@ +// +NA PUM2_107 + A C G T +01 0.248 0.248 0.248 99.257 +02 0.248 0.248 99.257 0.248 +03 0.248 0.248 0.248 99.257 +04 99.257 0.248 0.248 0.248 +05 25.0 25.0 25.0 25.0 +06 99.257 0.248 0.248 0.248 +07 0.248 0.248 0.248 99.257 +08 99.257 0.248 0.248 0.248 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM2_116 b/resources/ATtRACT_hsa/motif_PUM2_116 new file mode 100644 index 0000000..b0f8136 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM2_116 @@ -0,0 +1,12 @@ +// +NA PUM2_116 + A C G T +01 0.329 0.329 0.329 99.013 +02 0.329 0.329 99.013 0.329 +03 0.329 0.329 0.329 99.013 +04 99.013 0.329 0.329 0.329 +05 33.224 33.224 0.329 33.224 +06 99.013 0.329 0.329 0.329 +07 0.329 0.329 0.329 99.013 +08 99.013 0.329 0.329 0.329 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM2_129 b/resources/ATtRACT_hsa/motif_PUM2_129 new file mode 100644 index 0000000..289550d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM2_129 @@ -0,0 +1,12 @@ +// +NA PUM2_129 + A C G T +01 0.329 0.329 0.329 99.013 +02 0.329 0.329 99.013 0.329 +03 0.329 0.329 0.329 99.013 +04 99.013 0.329 0.329 0.329 +05 33.224 33.224 0.329 33.224 +06 99.013 0.329 0.329 0.329 +07 0.329 0.329 0.329 99.013 +08 99.013 0.329 0.329 0.329 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM2_361 b/resources/ATtRACT_hsa/motif_PUM2_361 new file mode 100644 index 0000000..671229e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM2_361 @@ -0,0 +1,12 @@ +// +NA PUM2_361 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM2_503 b/resources/ATtRACT_hsa/motif_PUM2_503 new file mode 100644 index 0000000..1bda03e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM2_503 @@ -0,0 +1,12 @@ +// +NA PUM2_503 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_PUM2_514 b/resources/ATtRACT_hsa/motif_PUM2_514 new file mode 100644 index 0000000..2bd8cad --- /dev/null +++ b/resources/ATtRACT_hsa/motif_PUM2_514 @@ -0,0 +1,12 @@ +// +NA PUM2_514 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_104 b/resources/ATtRACT_hsa/motif_QKI_104 new file mode 100644 index 0000000..ee1df70 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_104 @@ -0,0 +1,16 @@ +// +NA QKI_104 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 97.115 0.962 0.962 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_1138 b/resources/ATtRACT_hsa/motif_QKI_1138 new file mode 100644 index 0000000..377e227 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_1138 @@ -0,0 +1,10 @@ +// +NA QKI_1138 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_1139 b/resources/ATtRACT_hsa/motif_QKI_1139 new file mode 100644 index 0000000..3ed5504 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_1139 @@ -0,0 +1,9 @@ +// +NA QKI_1139 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_1140 b/resources/ATtRACT_hsa/motif_QKI_1140 new file mode 100644 index 0000000..384643a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_1140 @@ -0,0 +1,9 @@ +// +NA QKI_1140 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_1141 b/resources/ATtRACT_hsa/motif_QKI_1141 new file mode 100644 index 0000000..0c2e710 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_1141 @@ -0,0 +1,10 @@ +// +NA QKI_1141 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_1142 b/resources/ATtRACT_hsa/motif_QKI_1142 new file mode 100644 index 0000000..2fb4ef6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_1142 @@ -0,0 +1,10 @@ +// +NA QKI_1142 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_3 b/resources/ATtRACT_hsa/motif_QKI_3 new file mode 100644 index 0000000..e596833 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_3 @@ -0,0 +1,10 @@ +// +NA QKI_3 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_352 b/resources/ATtRACT_hsa/motif_QKI_352 new file mode 100644 index 0000000..983124d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_352 @@ -0,0 +1,10 @@ +// +NA QKI_352 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_70 b/resources/ATtRACT_hsa/motif_QKI_70 new file mode 100644 index 0000000..800a003 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_70 @@ -0,0 +1,16 @@ +// +NA QKI_70 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 0.962 97.115 +11 97.115 0.962 0.962 0.962 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_83 b/resources/ATtRACT_hsa/motif_QKI_83 new file mode 100644 index 0000000..afa384c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_83 @@ -0,0 +1,16 @@ +// +NA QKI_83 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 0.962 97.115 +11 97.115 0.962 0.962 0.962 +12 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_QKI_M046_0.6 b/resources/ATtRACT_hsa/motif_QKI_M046_0.6 new file mode 100644 index 0000000..138c8ec --- /dev/null +++ b/resources/ATtRACT_hsa/motif_QKI_M046_0.6 @@ -0,0 +1,11 @@ +// +NA QKI_M046_0.6 + A C G T +01 82.435 5.855 5.855 5.855 +02 1.469 95.594 1.469 1.469 +03 1.469 1.469 1.469 95.594 +04 95.594 1.469 1.469 1.469 +05 95.594 1.469 1.469 1.469 +06 1.469 82.084 1.469 14.979 +07 41.115 30.497 17.305 11.083 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RALY_M150_0.6 b/resources/ATtRACT_hsa/motif_RALY_M150_0.6 new file mode 100644 index 0000000..5d02af6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RALY_M150_0.6 @@ -0,0 +1,11 @@ +// +NA RALY_M150_0.6 + A C G T +01 12.042 3.036 3.036 81.885 +02 0.605 0.605 0.605 98.186 +03 0.605 0.605 0.605 98.186 +04 0.605 0.605 0.605 98.186 +05 0.605 0.605 0.605 98.186 +06 0.605 9.333 9.516 80.547 +07 7.846 17.405 55.165 19.584 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_335 b/resources/ATtRACT_hsa/motif_RBFOX1_335 new file mode 100644 index 0000000..7d8a635 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_335 @@ -0,0 +1,11 @@ +// +NA RBFOX1_335 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_612 b/resources/ATtRACT_hsa/motif_RBFOX1_612 new file mode 100644 index 0000000..5fd2e1d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_612 @@ -0,0 +1,10 @@ +// +NA RBFOX1_612 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_613 b/resources/ATtRACT_hsa/motif_RBFOX1_613 new file mode 100644 index 0000000..daca5ff --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_613 @@ -0,0 +1,10 @@ +// +NA RBFOX1_613 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_616 b/resources/ATtRACT_hsa/motif_RBFOX1_616 new file mode 100644 index 0000000..d56b6c5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_616 @@ -0,0 +1,10 @@ +// +NA RBFOX1_616 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_617 b/resources/ATtRACT_hsa/motif_RBFOX1_617 new file mode 100644 index 0000000..36db9d0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_617 @@ -0,0 +1,10 @@ +// +NA RBFOX1_617 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_620 b/resources/ATtRACT_hsa/motif_RBFOX1_620 new file mode 100644 index 0000000..385a938 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_620 @@ -0,0 +1,10 @@ +// +NA RBFOX1_620 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_621 b/resources/ATtRACT_hsa/motif_RBFOX1_621 new file mode 100644 index 0000000..f564eca --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_621 @@ -0,0 +1,10 @@ +// +NA RBFOX1_621 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_M159_0.6 b/resources/ATtRACT_hsa/motif_RBFOX1_M159_0.6 new file mode 100644 index 0000000..0e18eb8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_M159_0.6 @@ -0,0 +1,11 @@ +// +NA RBFOX1_M159_0.6 + A C G T +01 31.21 5.175 5.175 58.441 +02 0.422 0.422 98.734 0.422 +03 0.422 98.734 0.422 0.422 +04 98.734 0.422 0.422 0.422 +05 0.422 0.422 0.422 98.734 +06 0.422 0.422 98.734 0.422 +07 31.369 48.144 10.243 10.243 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_M298_0.6 b/resources/ATtRACT_hsa/motif_RBFOX1_M298_0.6 new file mode 100644 index 0000000..33e9d5e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_M298_0.6 @@ -0,0 +1,10 @@ +// +NA RBFOX1_M298_0.6 + A C G T +01 4.255 1.0 1.0 93.745 +02 1.0 1.0 97.0 1.0 +03 1.0 97.0 1.0 1.0 +04 97.0 1.0 1.0 1.0 +05 1.0 1.0 1.0 97.0 +06 1.0 1.0 97.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX1_s92 b/resources/ATtRACT_hsa/motif_RBFOX1_s92 new file mode 100644 index 0000000..3f8aa16 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX1_s92 @@ -0,0 +1,10 @@ +// +NA RBFOX1_s92 + A C G T +01 49.51 0.49 0.49 49.51 +02 0.49 0.49 98.529 0.49 +03 0.49 98.529 0.49 0.49 +04 98.529 0.49 0.49 0.49 +05 0.49 0.49 0.49 98.529 +06 0.49 0.49 98.529 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX2_141 b/resources/ATtRACT_hsa/motif_RBFOX2_141 new file mode 100644 index 0000000..39d6afe --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX2_141 @@ -0,0 +1,10 @@ +// +NA RBFOX2_141 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX2_622 b/resources/ATtRACT_hsa/motif_RBFOX2_622 new file mode 100644 index 0000000..a17b1c6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX2_622 @@ -0,0 +1,10 @@ +// +NA RBFOX2_622 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX2_625 b/resources/ATtRACT_hsa/motif_RBFOX2_625 new file mode 100644 index 0000000..b795964 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX2_625 @@ -0,0 +1,10 @@ +// +NA RBFOX2_625 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX2_627 b/resources/ATtRACT_hsa/motif_RBFOX2_627 new file mode 100644 index 0000000..3315fc0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX2_627 @@ -0,0 +1,10 @@ +// +NA RBFOX2_627 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX2_630 b/resources/ATtRACT_hsa/motif_RBFOX2_630 new file mode 100644 index 0000000..7195cf9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX2_630 @@ -0,0 +1,10 @@ +// +NA RBFOX2_630 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBFOX2_631 b/resources/ATtRACT_hsa/motif_RBFOX2_631 new file mode 100644 index 0000000..fe2dc14 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBFOX2_631 @@ -0,0 +1,10 @@ +// +NA RBFOX2_631 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM14_M050_0.6 b/resources/ATtRACT_hsa/motif_RBM14_M050_0.6 new file mode 100644 index 0000000..ea5f2ce --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM14_M050_0.6 @@ -0,0 +1,11 @@ +// +NA RBM14_M050_0.6 + A C G T +01 5.477 5.477 83.568 5.477 +02 0.643 98.071 0.643 0.643 +03 0.643 0.643 98.071 0.643 +04 0.643 89.305 9.409 0.643 +05 0.643 9.409 89.305 0.643 +06 0.643 22.171 67.85 9.335 +07 5.647 23.466 57.065 13.822 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM14_M109_0.6 b/resources/ATtRACT_hsa/motif_RBM14_M109_0.6 new file mode 100644 index 0000000..f729bfc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM14_M109_0.6 @@ -0,0 +1,11 @@ +// +NA RBM14_M109_0.6 + A C G T +01 3.002 11.447 74.774 10.777 +02 0.552 81.849 17.048 0.552 +03 0.552 0.552 98.345 0.552 +04 0.552 89.297 9.599 0.552 +05 0.552 9.599 89.297 0.552 +06 0.552 30.635 60.492 8.322 +07 7.915 7.915 76.256 7.915 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM24_M175_0.6 b/resources/ATtRACT_hsa/motif_RBM24_M175_0.6 new file mode 100644 index 0000000..c52aa5a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM24_M175_0.6 @@ -0,0 +1,11 @@ +// +NA RBM24_M175_0.6 + A C G T +01 47.18 8.126 8.126 36.568 +02 0.906 0.906 97.281 0.906 +03 29.26 0.906 0.906 68.927 +04 0.906 0.906 97.281 0.906 +05 0.906 0.906 0.906 97.281 +06 0.906 0.906 97.281 0.906 +07 53.551 5.733 15.754 24.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM25_1143 b/resources/ATtRACT_hsa/motif_RBM25_1143 new file mode 100644 index 0000000..274fe04 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM25_1143 @@ -0,0 +1,10 @@ +// +NA RBM25_1143 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM25_1144 b/resources/ATtRACT_hsa/motif_RBM25_1144 new file mode 100644 index 0000000..841782c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM25_1144 @@ -0,0 +1,12 @@ +// +NA RBM25_1144 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM28_M047_0.6 b/resources/ATtRACT_hsa/motif_RBM28_M047_0.6 new file mode 100644 index 0000000..d391e65 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM28_M047_0.6 @@ -0,0 +1,11 @@ +// +NA RBM28_M047_0.6 + A C G T +01 8.021 8.021 75.936 8.021 +02 51.293 3.556 3.556 41.594 +03 1.22 1.22 96.34 1.22 +04 1.22 1.22 1.22 96.34 +05 96.34 1.22 1.22 1.22 +06 1.22 1.22 96.34 1.22 +07 40.311 8.466 16.331 34.892 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM3_M048_0.6 b/resources/ATtRACT_hsa/motif_RBM3_M048_0.6 new file mode 100644 index 0000000..d6c4821 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM3_M048_0.6 @@ -0,0 +1,11 @@ +// +NA RBM3_M048_0.6 + A C G T +01 16.931 8.24 66.588 8.24 +02 71.959 3.677 20.687 3.677 +03 18.449 1.333 19.172 61.046 +04 96.0 1.333 1.333 1.333 +05 19.172 78.162 1.333 1.333 +06 12.508 3.655 59.701 24.137 +07 68.284 10.572 10.572 10.572 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM41_M051_0.6 b/resources/ATtRACT_hsa/motif_RBM41_M051_0.6 new file mode 100644 index 0000000..1c184c0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM41_M051_0.6 @@ -0,0 +1,11 @@ +// +NA RBM41_M051_0.6 + A C G T +01 44.6 5.667 5.667 44.065 +02 0.902 0.902 0.902 97.295 +03 97.295 0.902 0.902 0.902 +04 0.902 97.295 0.902 0.902 +05 58.287 0.902 0.902 39.91 +06 0.902 0.902 0.902 97.295 +07 10.446 10.446 19.473 59.635 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM42_M142_0.6 b/resources/ATtRACT_hsa/motif_RBM42_M142_0.6 new file mode 100644 index 0000000..f0e42ab --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM42_M142_0.6 @@ -0,0 +1,11 @@ +// +NA RBM42_M142_0.6 + A C G T +01 76.251 7.916 7.916 7.916 +02 97.405 0.865 0.865 0.865 +03 0.865 97.405 0.865 0.865 +04 0.865 0.865 0.865 97.405 +05 97.405 0.865 0.865 0.865 +06 52.199 31.798 3.26 12.743 +07 10.422 10.422 68.734 10.422 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM46_M052_0.6 b/resources/ATtRACT_hsa/motif_RBM46_M052_0.6 new file mode 100644 index 0000000..a02c351 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM46_M052_0.6 @@ -0,0 +1,11 @@ +// +NA RBM46_M052_0.6 + A C G T +01 71.37 3.556 21.519 3.556 +02 96.59 1.137 1.137 1.137 +03 1.137 1.137 1.137 96.59 +04 1.137 59.789 37.937 1.137 +05 96.59 1.137 1.137 1.137 +06 60.308 3.59 13.12 22.981 +07 30.156 10.922 19.702 39.219 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM4_1145 b/resources/ATtRACT_hsa/motif_RBM4_1145 new file mode 100644 index 0000000..ac4699d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM4_1145 @@ -0,0 +1,13 @@ +// +NA RBM4_1145 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM4_1146 b/resources/ATtRACT_hsa/motif_RBM4_1146 new file mode 100644 index 0000000..5b9f7a1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM4_1146 @@ -0,0 +1,12 @@ +// +NA RBM4_1146 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM4_1147 b/resources/ATtRACT_hsa/motif_RBM4_1147 new file mode 100644 index 0000000..aa02372 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM4_1147 @@ -0,0 +1,11 @@ +// +NA RBM4_1147 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM4_s102 b/resources/ATtRACT_hsa/motif_RBM4_s102 new file mode 100644 index 0000000..b568c3e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM4_s102 @@ -0,0 +1,11 @@ +// +NA RBM4_s102 + A C G T +01 0.198 39.881 59.722 0.198 +02 0.198 59.722 39.881 0.198 +03 0.198 39.881 59.722 0.198 +04 0.198 59.722 39.881 0.198 +05 0.198 39.881 59.722 0.198 +06 0.198 20.04 79.563 0.198 +07 20.04 0.198 59.722 20.04 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM5_1148 b/resources/ATtRACT_hsa/motif_RBM5_1148 new file mode 100644 index 0000000..cc9e7d4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM5_1148 @@ -0,0 +1,13 @@ +// +NA RBM5_1148 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM5_1149 b/resources/ATtRACT_hsa/motif_RBM5_1149 new file mode 100644 index 0000000..0328278 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM5_1149 @@ -0,0 +1,11 @@ +// +NA RBM5_1149 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM5_1150 b/resources/ATtRACT_hsa/motif_RBM5_1150 new file mode 100644 index 0000000..79d406d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM5_1150 @@ -0,0 +1,11 @@ +// +NA RBM5_1150 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM5_1151 b/resources/ATtRACT_hsa/motif_RBM5_1151 new file mode 100644 index 0000000..b16ce2c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM5_1151 @@ -0,0 +1,11 @@ +// +NA RBM5_1151 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM5_1152 b/resources/ATtRACT_hsa/motif_RBM5_1152 new file mode 100644 index 0000000..c6af641 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM5_1152 @@ -0,0 +1,10 @@ +// +NA RBM5_1152 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM5_1153 b/resources/ATtRACT_hsa/motif_RBM5_1153 new file mode 100644 index 0000000..e15397e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM5_1153 @@ -0,0 +1,10 @@ +// +NA RBM5_1153 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM5_1154 b/resources/ATtRACT_hsa/motif_RBM5_1154 new file mode 100644 index 0000000..e009324 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM5_1154 @@ -0,0 +1,10 @@ +// +NA RBM5_1154 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM5_M053_0.6 b/resources/ATtRACT_hsa/motif_RBM5_M053_0.6 new file mode 100644 index 0000000..77934df --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM5_M053_0.6 @@ -0,0 +1,11 @@ +// +NA RBM5_M053_0.6 + A C G T +01 13.031 3.875 79.22 3.875 +02 88.376 3.875 3.875 3.875 +03 70.144 3.875 22.107 3.875 +04 1.554 1.554 95.339 1.554 +05 1.554 1.554 95.339 1.554 +06 62.638 6.328 6.328 24.706 +07 57.782 11.033 20.151 11.033 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM5_M145_0.6 b/resources/ATtRACT_hsa/motif_RBM5_M145_0.6 new file mode 100644 index 0000000..e49768f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM5_M145_0.6 @@ -0,0 +1,11 @@ +// +NA RBM5_M145_0.6 + A C G T +01 6.345 27.005 60.305 6.345 +02 87.857 4.048 4.048 4.048 +03 66.812 10.694 11.883 10.61 +04 1.735 19.67 76.861 1.735 +05 1.735 10.711 85.82 1.735 +06 70.029 4.046 21.88 4.046 +07 15.174 6.323 72.18 6.323 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM6_M161_0.6 b/resources/ATtRACT_hsa/motif_RBM6_M161_0.6 new file mode 100644 index 0000000..9e44363 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM6_M161_0.6 @@ -0,0 +1,11 @@ +// +NA RBM6_M161_0.6 + A C G T +01 45.769 27.849 8.634 17.748 +02 86.046 1.599 1.599 10.756 +03 1.599 1.599 1.599 95.204 +04 1.599 95.204 1.599 1.599 +05 1.599 95.204 1.599 1.599 +06 95.204 1.599 1.599 1.599 +07 27.822 8.615 54.949 8.615 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBM8A_M054_0.6 b/resources/ATtRACT_hsa/motif_RBM8A_M054_0.6 new file mode 100644 index 0000000..1b01124 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBM8A_M054_0.6 @@ -0,0 +1,11 @@ +// +NA RBM8A_M054_0.6 + A C G T +01 19.489 11.287 57.937 11.287 +02 2.097 66.965 2.097 28.84 +03 2.097 9.89 85.916 2.097 +04 2.097 85.916 9.89 2.097 +05 2.097 9.89 85.916 2.097 +06 2.097 84.631 11.175 2.097 +07 6.664 15.723 61.443 16.17 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMS1_M143_0.6 b/resources/ATtRACT_hsa/motif_RBMS1_M143_0.6 new file mode 100644 index 0000000..be6ffea --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMS1_M143_0.6 @@ -0,0 +1,11 @@ +// +NA RBMS1_M143_0.6 + A C G T +01 10.777 10.777 19.382 59.063 +02 96.29 1.237 1.237 1.237 +03 1.237 1.237 1.237 96.29 +04 96.29 1.237 1.237 1.237 +05 10.367 10.982 12.704 65.947 +06 75.693 21.834 1.237 1.237 +07 1.237 58.947 38.579 1.237 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMS3_M055_0.6 b/resources/ATtRACT_hsa/motif_RBMS3_M055_0.6 new file mode 100644 index 0000000..743d8e3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMS3_M055_0.6 @@ -0,0 +1,11 @@ +// +NA RBMS3_M055_0.6 + A C G T +01 58.269 20.267 10.732 10.732 +02 1.171 10.804 1.171 86.853 +03 96.486 1.171 1.171 1.171 +04 1.171 1.171 1.171 96.486 +05 96.486 1.171 1.171 1.171 +06 10.435 10.555 21.782 57.228 +07 52.478 35.688 5.917 5.917 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMS3_M164_0.6 b/resources/ATtRACT_hsa/motif_RBMS3_M164_0.6 new file mode 100644 index 0000000..31d7633 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMS3_M164_0.6 @@ -0,0 +1,11 @@ +// +NA RBMS3_M164_0.6 + A C G T +01 17.386 17.371 8.343 56.9 +02 89.4 3.533 3.533 3.533 +03 1.115 1.115 1.115 96.656 +04 96.656 1.115 1.115 1.115 +05 10.77 1.115 1.115 87.0 +06 79.888 3.494 3.494 13.124 +07 14.849 24.692 36.598 23.861 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_1316 b/resources/ATtRACT_hsa/motif_RBMX_1316 new file mode 100644 index 0000000..4028276 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_1316 @@ -0,0 +1,13 @@ +// +NA RBMX_1316 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_1361 b/resources/ATtRACT_hsa/motif_RBMX_1361 new file mode 100644 index 0000000..d6a6135 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_1361 @@ -0,0 +1,8 @@ +// +NA RBMX_1361 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_1377 b/resources/ATtRACT_hsa/motif_RBMX_1377 new file mode 100644 index 0000000..e01e38d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_1377 @@ -0,0 +1,11 @@ +// +NA RBMX_1377 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_1386 b/resources/ATtRACT_hsa/motif_RBMX_1386 new file mode 100644 index 0000000..e39e0b4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_1386 @@ -0,0 +1,15 @@ +// +NA RBMX_1386 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_526 b/resources/ATtRACT_hsa/motif_RBMX_526 new file mode 100644 index 0000000..f098c19 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_526 @@ -0,0 +1,9 @@ +// +NA RBMX_526 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_842 b/resources/ATtRACT_hsa/motif_RBMX_842 new file mode 100644 index 0000000..88c6f22 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_842 @@ -0,0 +1,10 @@ +// +NA RBMX_842 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_843 b/resources/ATtRACT_hsa/motif_RBMX_843 new file mode 100644 index 0000000..85a1d95 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_843 @@ -0,0 +1,10 @@ +// +NA RBMX_843 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_844 b/resources/ATtRACT_hsa/motif_RBMX_844 new file mode 100644 index 0000000..5e4bf50 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_844 @@ -0,0 +1,10 @@ +// +NA RBMX_844 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_845 b/resources/ATtRACT_hsa/motif_RBMX_845 new file mode 100644 index 0000000..e1e3a40 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_845 @@ -0,0 +1,10 @@ +// +NA RBMX_845 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_847 b/resources/ATtRACT_hsa/motif_RBMX_847 new file mode 100644 index 0000000..1cb5154 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_847 @@ -0,0 +1,9 @@ +// +NA RBMX_847 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_848 b/resources/ATtRACT_hsa/motif_RBMX_848 new file mode 100644 index 0000000..1007437 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_848 @@ -0,0 +1,10 @@ +// +NA RBMX_848 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMX_849 b/resources/ATtRACT_hsa/motif_RBMX_849 new file mode 100644 index 0000000..de8f49a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMX_849 @@ -0,0 +1,10 @@ +// +NA RBMX_849 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMY1A1_410 b/resources/ATtRACT_hsa/motif_RBMY1A1_410 new file mode 100644 index 0000000..b311175 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMY1A1_410 @@ -0,0 +1,11 @@ +// +NA RBMY1A1_410 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RBMY1A1_M246_0.6 b/resources/ATtRACT_hsa/motif_RBMY1A1_M246_0.6 new file mode 100644 index 0000000..7c550e3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RBMY1A1_M246_0.6 @@ -0,0 +1,9 @@ +// +NA RBMY1A1_M246_0.6 + A C G T +01 1.0 97.0 1.0 1.0 +02 31.579 2.632 1.0 64.789 +03 1.0 97.0 1.0 1.0 +04 97.0 1.0 1.0 1.0 +05 97.0 1.0 1.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RC3H1_354 b/resources/ATtRACT_hsa/motif_RC3H1_354 new file mode 100644 index 0000000..9d7171e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RC3H1_354 @@ -0,0 +1,13 @@ +// +NA RC3H1_354 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RC3H1_467 b/resources/ATtRACT_hsa/motif_RC3H1_467 new file mode 100644 index 0000000..fd55595 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RC3H1_467 @@ -0,0 +1,15 @@ +// +NA RC3H1_467 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RC3H1_531 b/resources/ATtRACT_hsa/motif_RC3H1_531 new file mode 100644 index 0000000..f6af5a7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RC3H1_531 @@ -0,0 +1,8 @@ +// +NA RC3H1_531 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_RNASEL_563 b/resources/ATtRACT_hsa/motif_RNASEL_563 new file mode 100644 index 0000000..f123b9d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_RNASEL_563 @@ -0,0 +1,8 @@ +// +NA RNASEL_563 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SAMD4A_M061_0.6 b/resources/ATtRACT_hsa/motif_SAMD4A_M061_0.6 new file mode 100644 index 0000000..ca92165 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SAMD4A_M061_0.6 @@ -0,0 +1,11 @@ +// +NA SAMD4A_M061_0.6 + A C G T +01 0.614 0.614 98.158 0.614 +02 0.614 98.158 0.614 0.614 +03 10.016 0.614 27.275 62.096 +04 0.614 0.614 98.158 0.614 +05 0.614 0.614 98.158 0.614 +06 38.969 36.834 10.565 13.632 +07 18.929 61.031 10.02 10.02 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SART3_M062_0.6 b/resources/ATtRACT_hsa/motif_SART3_M062_0.6 new file mode 100644 index 0000000..6c33d57 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SART3_M062_0.6 @@ -0,0 +1,11 @@ +// +NA SART3_M062_0.6 + A C G T +01 75.702 8.099 8.099 8.099 +02 32.708 12.315 51.683 3.294 +03 97.38 0.873 0.873 0.873 +04 97.38 0.873 0.873 0.873 +05 97.38 0.873 0.873 0.873 +06 77.212 12.061 9.853 0.873 +07 68.741 20.394 0.873 9.992 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1184 b/resources/ATtRACT_hsa/motif_SF1_1184 new file mode 100644 index 0000000..d95656a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1184 @@ -0,0 +1,11 @@ +// +NA SF1_1184 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1185 b/resources/ATtRACT_hsa/motif_SF1_1185 new file mode 100644 index 0000000..df46658 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1185 @@ -0,0 +1,11 @@ +// +NA SF1_1185 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1186 b/resources/ATtRACT_hsa/motif_SF1_1186 new file mode 100644 index 0000000..9e1c73b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1186 @@ -0,0 +1,11 @@ +// +NA SF1_1186 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1187 b/resources/ATtRACT_hsa/motif_SF1_1187 new file mode 100644 index 0000000..8e08f68 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1187 @@ -0,0 +1,11 @@ +// +NA SF1_1187 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1188 b/resources/ATtRACT_hsa/motif_SF1_1188 new file mode 100644 index 0000000..45332d6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1188 @@ -0,0 +1,11 @@ +// +NA SF1_1188 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1189 b/resources/ATtRACT_hsa/motif_SF1_1189 new file mode 100644 index 0000000..70ab323 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1189 @@ -0,0 +1,11 @@ +// +NA SF1_1189 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1190 b/resources/ATtRACT_hsa/motif_SF1_1190 new file mode 100644 index 0000000..0474672 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1190 @@ -0,0 +1,11 @@ +// +NA SF1_1190 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1191 b/resources/ATtRACT_hsa/motif_SF1_1191 new file mode 100644 index 0000000..4a98ada --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1191 @@ -0,0 +1,11 @@ +// +NA SF1_1191 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1192 b/resources/ATtRACT_hsa/motif_SF1_1192 new file mode 100644 index 0000000..9f3cbf0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1192 @@ -0,0 +1,11 @@ +// +NA SF1_1192 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1193 b/resources/ATtRACT_hsa/motif_SF1_1193 new file mode 100644 index 0000000..0eb998f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1193 @@ -0,0 +1,11 @@ +// +NA SF1_1193 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1194 b/resources/ATtRACT_hsa/motif_SF1_1194 new file mode 100644 index 0000000..b53176a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1194 @@ -0,0 +1,11 @@ +// +NA SF1_1194 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1195 b/resources/ATtRACT_hsa/motif_SF1_1195 new file mode 100644 index 0000000..3d680e8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1195 @@ -0,0 +1,11 @@ +// +NA SF1_1195 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1196 b/resources/ATtRACT_hsa/motif_SF1_1196 new file mode 100644 index 0000000..c14a5fc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1196 @@ -0,0 +1,11 @@ +// +NA SF1_1196 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1197 b/resources/ATtRACT_hsa/motif_SF1_1197 new file mode 100644 index 0000000..436b8ef --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1197 @@ -0,0 +1,11 @@ +// +NA SF1_1197 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1198 b/resources/ATtRACT_hsa/motif_SF1_1198 new file mode 100644 index 0000000..750845f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1198 @@ -0,0 +1,11 @@ +// +NA SF1_1198 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1199 b/resources/ATtRACT_hsa/motif_SF1_1199 new file mode 100644 index 0000000..6395678 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1199 @@ -0,0 +1,11 @@ +// +NA SF1_1199 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_120 b/resources/ATtRACT_hsa/motif_SF1_120 new file mode 100644 index 0000000..3447993 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_120 @@ -0,0 +1,15 @@ +// +NA SF1_120 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 97.115 0.962 0.962 +10 97.115 0.962 0.962 0.962 +11 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1200 b/resources/ATtRACT_hsa/motif_SF1_1200 new file mode 100644 index 0000000..3fc67e4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1200 @@ -0,0 +1,11 @@ +// +NA SF1_1200 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1201 b/resources/ATtRACT_hsa/motif_SF1_1201 new file mode 100644 index 0000000..96bea84 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1201 @@ -0,0 +1,11 @@ +// +NA SF1_1201 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1202 b/resources/ATtRACT_hsa/motif_SF1_1202 new file mode 100644 index 0000000..4782ca6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1202 @@ -0,0 +1,11 @@ +// +NA SF1_1202 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1203 b/resources/ATtRACT_hsa/motif_SF1_1203 new file mode 100644 index 0000000..88e8268 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1203 @@ -0,0 +1,11 @@ +// +NA SF1_1203 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1204 b/resources/ATtRACT_hsa/motif_SF1_1204 new file mode 100644 index 0000000..27fab75 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1204 @@ -0,0 +1,11 @@ +// +NA SF1_1204 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1205 b/resources/ATtRACT_hsa/motif_SF1_1205 new file mode 100644 index 0000000..12240e8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1205 @@ -0,0 +1,11 @@ +// +NA SF1_1205 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1206 b/resources/ATtRACT_hsa/motif_SF1_1206 new file mode 100644 index 0000000..59c60f8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1206 @@ -0,0 +1,11 @@ +// +NA SF1_1206 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1207 b/resources/ATtRACT_hsa/motif_SF1_1207 new file mode 100644 index 0000000..caa3e2d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1207 @@ -0,0 +1,11 @@ +// +NA SF1_1207 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1208 b/resources/ATtRACT_hsa/motif_SF1_1208 new file mode 100644 index 0000000..a010e26 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1208 @@ -0,0 +1,10 @@ +// +NA SF1_1208 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1209 b/resources/ATtRACT_hsa/motif_SF1_1209 new file mode 100644 index 0000000..8a80500 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1209 @@ -0,0 +1,10 @@ +// +NA SF1_1209 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_1210 b/resources/ATtRACT_hsa/motif_SF1_1210 new file mode 100644 index 0000000..136487f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_1210 @@ -0,0 +1,10 @@ +// +NA SF1_1210 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SF1_495 b/resources/ATtRACT_hsa/motif_SF1_495 new file mode 100644 index 0000000..184fd43 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SF1_495 @@ -0,0 +1,14 @@ +// +NA SF1_495 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_1135 b/resources/ATtRACT_hsa/motif_SFPQ_1135 new file mode 100644 index 0000000..9d66566 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_1135 @@ -0,0 +1,11 @@ +// +NA SFPQ_1135 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_1136 b/resources/ATtRACT_hsa/motif_SFPQ_1136 new file mode 100644 index 0000000..8e2520f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_1136 @@ -0,0 +1,10 @@ +// +NA SFPQ_1136 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_42 b/resources/ATtRACT_hsa/motif_SFPQ_42 new file mode 100644 index 0000000..56431c8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_42 @@ -0,0 +1,15 @@ +// +NA SFPQ_42 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_M168_0.6 b/resources/ATtRACT_hsa/motif_SFPQ_M168_0.6 new file mode 100644 index 0000000..9be9b70 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_M168_0.6 @@ -0,0 +1,11 @@ +// +NA SFPQ_M168_0.6 + A C G T +01 8.845 8.845 64.373 17.938 +02 4.269 4.269 13.452 78.01 +03 48.322 1.917 39.088 10.673 +04 19.381 1.917 68.061 10.641 +05 12.168 1.917 10.673 75.242 +06 4.193 4.193 59.189 32.425 +07 8.722 8.722 26.202 56.353 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_s24 b/resources/ATtRACT_hsa/motif_SFPQ_s24 new file mode 100644 index 0000000..5c2316e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_s24 @@ -0,0 +1,12 @@ +// +NA SFPQ_s24 + A C G T +01 0.248 0.248 25.0 74.505 +02 25.0 0.248 74.505 0.248 +03 25.0 25.0 49.752 0.248 +04 74.505 0.248 25.0 0.248 +05 0.248 0.248 99.257 0.248 +06 49.752 0.248 49.752 0.248 +07 49.752 25.0 25.0 0.248 +08 25.0 49.752 25.0 0.248 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_s25 b/resources/ATtRACT_hsa/motif_SFPQ_s25 new file mode 100644 index 0000000..2e760cd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_s25 @@ -0,0 +1,13 @@ +// +NA SFPQ_s25 + A C G T +01 0.124 0.124 37.438 62.313 +02 37.438 12.562 37.438 12.562 +03 37.438 0.124 37.438 25.0 +04 49.876 12.562 37.438 0.124 +05 62.313 0.124 25.0 12.562 +06 0.124 0.124 99.627 0.124 +07 37.438 12.562 49.876 0.124 +08 62.313 0.124 25.0 12.562 +09 49.876 49.876 0.124 0.124 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_s26 b/resources/ATtRACT_hsa/motif_SFPQ_s26 new file mode 100644 index 0000000..3155333 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_s26 @@ -0,0 +1,11 @@ +// +NA SFPQ_s26 + A C G T +01 74.505 0.248 25.0 0.248 +02 49.752 0.248 49.752 0.248 +03 49.752 0.248 49.752 0.248 +04 25.0 0.248 74.505 0.248 +05 25.0 0.248 74.505 0.248 +06 25.0 25.0 25.0 25.0 +07 74.505 25.0 0.248 0.248 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_s69 b/resources/ATtRACT_hsa/motif_SFPQ_s69 new file mode 100644 index 0000000..e497fef --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_s69 @@ -0,0 +1,10 @@ +// +NA SFPQ_s69 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_s70 b/resources/ATtRACT_hsa/motif_SFPQ_s70 new file mode 100644 index 0000000..e294161 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_s70 @@ -0,0 +1,15 @@ +// +NA SFPQ_s70 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 97.115 0.962 +11 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_s71 b/resources/ATtRACT_hsa/motif_SFPQ_s71 new file mode 100644 index 0000000..4dda13d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_s71 @@ -0,0 +1,14 @@ +// +NA SFPQ_s71 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SFPQ_s72 b/resources/ATtRACT_hsa/motif_SFPQ_s72 new file mode 100644 index 0000000..20ae4b1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SFPQ_s72 @@ -0,0 +1,14 @@ +// +NA SFPQ_s72 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRNP70_M068_0.6 b/resources/ATtRACT_hsa/motif_SNRNP70_M068_0.6 new file mode 100644 index 0000000..871ff82 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRNP70_M068_0.6 @@ -0,0 +1,11 @@ +// +NA SNRNP70_M068_0.6 + A C G T +01 28.945 10.528 49.998 10.528 +02 61.618 3.52 3.52 31.341 +03 1.168 1.168 1.168 96.495 +04 1.168 96.495 1.168 1.168 +05 96.495 1.168 1.168 1.168 +06 96.495 1.168 1.168 1.168 +07 12.913 3.588 79.911 3.588 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRPA_346 b/resources/ATtRACT_hsa/motif_SNRPA_346 new file mode 100644 index 0000000..a192b68 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRPA_346 @@ -0,0 +1,12 @@ +// +NA SNRPA_346 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRPA_518 b/resources/ATtRACT_hsa/motif_SNRPA_518 new file mode 100644 index 0000000..2d8ddd6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRPA_518 @@ -0,0 +1,11 @@ +// +NA SNRPA_518 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRPA_M069_0.6 b/resources/ATtRACT_hsa/motif_SNRPA_M069_0.6 new file mode 100644 index 0000000..f66a3b5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRPA_M069_0.6 @@ -0,0 +1,11 @@ +// +NA SNRPA_M069_0.6 + A C G T +01 26.425 8.035 8.035 57.504 +02 19.283 0.881 0.881 78.955 +03 0.881 0.881 97.357 0.881 +04 0.881 97.357 0.881 0.881 +05 97.357 0.881 0.881 0.881 +06 0.881 97.357 0.881 0.881 +07 62.648 5.744 25.863 5.744 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRPA_M319_0.6 b/resources/ATtRACT_hsa/motif_SNRPA_M319_0.6 new file mode 100644 index 0000000..afddaf0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRPA_M319_0.6 @@ -0,0 +1,11 @@ +// +NA SNRPA_M319_0.6 + A C G T +01 97.0 1.0 1.0 1.0 +02 9.091 1.0 1.0 88.909 +03 1.0 1.0 1.0 97.0 +04 1.0 1.0 97.0 1.0 +05 1.0 97.0 1.0 1.0 +06 97.0 1.0 1.0 1.0 +07 1.0 97.0 1.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRPA_M345_0.6 b/resources/ATtRACT_hsa/motif_SNRPA_M345_0.6 new file mode 100644 index 0000000..d813db7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRPA_M345_0.6 @@ -0,0 +1,15 @@ +// +NA SNRPA_M345_0.6 + A C G T +01 1.0 1.0 97.0 1.0 +02 52.333 1.0 13.333 33.333 +03 20.0 1.0 1.0 78.0 +04 33.333 1.0 1.0 64.667 +05 1.0 97.0 1.0 1.0 +06 1.0 84.667 13.333 1.0 +07 33.333 6.667 1.0 59.0 +08 1.0 1.0 97.0 1.0 +09 1.0 71.333 1.0 26.667 +10 13.333 6.667 1.0 79.0 +11 91.333 6.667 1.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRPA_M346_0.6 b/resources/ATtRACT_hsa/motif_SNRPA_M346_0.6 new file mode 100644 index 0000000..d8506ae --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRPA_M346_0.6 @@ -0,0 +1,14 @@ +// +NA SNRPA_M346_0.6 + A C G T +01 12.5 6.25 75.0 6.25 +02 6.25 6.25 81.25 6.25 +03 6.25 1.0 74.0 18.75 +04 18.75 1.0 25.0 55.25 +05 91.75 1.0 6.25 1.0 +06 13.333 1.0 1.0 84.667 +07 1.0 1.0 97.0 1.0 +08 1.0 97.0 1.0 1.0 +09 1.0 12.5 6.25 80.25 +10 1.0 1.0 91.75 6.25 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRPA_M347_0.6 b/resources/ATtRACT_hsa/motif_SNRPA_M347_0.6 new file mode 100644 index 0000000..2038aed --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRPA_M347_0.6 @@ -0,0 +1,15 @@ +// +NA SNRPA_M347_0.6 + A C G T +01 23.077 1.0 68.231 7.692 +02 46.154 23.077 23.077 7.692 +03 1.0 1.0 97.0 1.0 +04 1.0 97.0 1.0 1.0 +05 97.0 1.0 1.0 1.0 +06 1.0 1.0 97.0 1.0 +07 1.0 1.0 1.0 97.0 +08 90.308 1.0 7.692 1.0 +09 1.0 1.0 97.0 1.0 +10 1.0 1.0 51.846 46.154 +11 1.0 38.462 59.538 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRPA_M348_0.6 b/resources/ATtRACT_hsa/motif_SNRPA_M348_0.6 new file mode 100644 index 0000000..1b5fb55 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRPA_M348_0.6 @@ -0,0 +1,11 @@ +// +NA SNRPA_M348_0.6 + A C G T +01 67.75 1.0 6.25 25.0 +02 1.0 25.0 73.0 1.0 +03 1.0 1.0 91.75 6.25 +04 74.0 12.5 12.5 1.0 +05 6.25 1.0 80.25 12.5 +06 86.5 6.25 6.25 1.0 +07 6.25 6.25 12.5 75.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SNRPB2_504 b/resources/ATtRACT_hsa/motif_SNRPB2_504 new file mode 100644 index 0000000..710c720 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SNRPB2_504 @@ -0,0 +1,14 @@ +// +NA SNRPB2_504 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP14_342 b/resources/ATtRACT_hsa/motif_SRP14_342 new file mode 100644 index 0000000..4e4b258 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP14_342 @@ -0,0 +1,9 @@ +// +NA SRP14_342 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP14_344 b/resources/ATtRACT_hsa/motif_SRP14_344 new file mode 100644 index 0000000..91a654a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP14_344 @@ -0,0 +1,8 @@ +// +NA SRP14_344 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP14_445 b/resources/ATtRACT_hsa/motif_SRP14_445 new file mode 100644 index 0000000..76f5ba9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP14_445 @@ -0,0 +1,13 @@ +// +NA SRP14_445 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP19_402 b/resources/ATtRACT_hsa/motif_SRP19_402 new file mode 100644 index 0000000..18a1ca2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP19_402 @@ -0,0 +1,8 @@ +// +NA SRP19_402 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP19_471 b/resources/ATtRACT_hsa/motif_SRP19_471 new file mode 100644 index 0000000..6ed0b84 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP19_471 @@ -0,0 +1,8 @@ +// +NA SRP19_471 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP19_540 b/resources/ATtRACT_hsa/motif_SRP19_540 new file mode 100644 index 0000000..b879149 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP19_540 @@ -0,0 +1,8 @@ +// +NA SRP19_540 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP19_547 b/resources/ATtRACT_hsa/motif_SRP19_547 new file mode 100644 index 0000000..056f275 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP19_547 @@ -0,0 +1,9 @@ +// +NA SRP19_547 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP54_408 b/resources/ATtRACT_hsa/motif_SRP54_408 new file mode 100644 index 0000000..3aa1854 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP54_408 @@ -0,0 +1,8 @@ +// +NA SRP54_408 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP54_456 b/resources/ATtRACT_hsa/motif_SRP54_456 new file mode 100644 index 0000000..2c9a268 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP54_456 @@ -0,0 +1,9 @@ +// +NA SRP54_456 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP54_510 b/resources/ATtRACT_hsa/motif_SRP54_510 new file mode 100644 index 0000000..fa4dfd1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP54_510 @@ -0,0 +1,8 @@ +// +NA SRP54_510 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP54_566 b/resources/ATtRACT_hsa/motif_SRP54_566 new file mode 100644 index 0000000..85a056b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP54_566 @@ -0,0 +1,8 @@ +// +NA SRP54_566 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP68_347 b/resources/ATtRACT_hsa/motif_SRP68_347 new file mode 100644 index 0000000..69c41eb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP68_347 @@ -0,0 +1,9 @@ +// +NA SRP68_347 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP68_363 b/resources/ATtRACT_hsa/motif_SRP68_363 new file mode 100644 index 0000000..052fc0a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP68_363 @@ -0,0 +1,9 @@ +// +NA SRP68_363 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP68_493 b/resources/ATtRACT_hsa/motif_SRP68_493 new file mode 100644 index 0000000..aa463bf --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP68_493 @@ -0,0 +1,8 @@ +// +NA SRP68_493 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP68_501 b/resources/ATtRACT_hsa/motif_SRP68_501 new file mode 100644 index 0000000..6a8fb95 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP68_501 @@ -0,0 +1,8 @@ +// +NA SRP68_501 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP68_570 b/resources/ATtRACT_hsa/motif_SRP68_570 new file mode 100644 index 0000000..f9fe42d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP68_570 @@ -0,0 +1,9 @@ +// +NA SRP68_570 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRP68_573 b/resources/ATtRACT_hsa/motif_SRP68_573 new file mode 100644 index 0000000..d22871b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRP68_573 @@ -0,0 +1,8 @@ +// +NA SRP68_573 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_1259 b/resources/ATtRACT_hsa/motif_SRSF10_1259 new file mode 100644 index 0000000..5beed71 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_1259 @@ -0,0 +1,10 @@ +// +NA SRSF10_1259 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_1260 b/resources/ATtRACT_hsa/motif_SRSF10_1260 new file mode 100644 index 0000000..9ba0935 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_1260 @@ -0,0 +1,10 @@ +// +NA SRSF10_1260 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_1262 b/resources/ATtRACT_hsa/motif_SRSF10_1262 new file mode 100644 index 0000000..3a52fa3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_1262 @@ -0,0 +1,13 @@ +// +NA SRSF10_1262 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_147 b/resources/ATtRACT_hsa/motif_SRSF10_147 new file mode 100644 index 0000000..8ed966e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_147 @@ -0,0 +1,10 @@ +// +NA SRSF10_147 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_163 b/resources/ATtRACT_hsa/motif_SRSF10_163 new file mode 100644 index 0000000..83047eb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_163 @@ -0,0 +1,10 @@ +// +NA SRSF10_163 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_M019_0.6 b/resources/ATtRACT_hsa/motif_SRSF10_M019_0.6 new file mode 100644 index 0000000..a4ed25b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_M019_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF10_M019_0.6 + A C G T +01 83.259 5.58 5.58 5.58 +02 9.662 0.908 88.522 0.908 +03 97.277 0.908 0.908 0.908 +04 10.787 0.908 87.397 0.908 +05 88.034 10.15 0.908 0.908 +06 57.994 20.838 20.26 0.908 +07 53.602 26.182 14.562 5.654 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_M086_0.6 b/resources/ATtRACT_hsa/motif_SRSF10_M086_0.6 new file mode 100644 index 0000000..beea62c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_M086_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF10_M086_0.6 + A C G T +01 88.392 9.781 0.914 0.914 +02 28.532 0.914 69.64 0.914 +03 89.019 0.914 9.153 0.914 +04 10.049 0.914 88.124 0.914 +05 69.64 0.914 28.532 0.914 +06 30.058 11.634 57.395 0.914 +07 32.694 14.517 49.484 3.306 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_M087_0.6 b/resources/ATtRACT_hsa/motif_SRSF10_M087_0.6 new file mode 100644 index 0000000..13318f4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_M087_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF10_M087_0.6 + A C G T +01 90.277 3.241 3.241 3.241 +02 18.06 0.803 80.335 0.803 +03 97.592 0.803 0.803 0.803 +04 9.669 0.803 88.726 0.803 +05 88.265 0.803 10.13 0.803 +06 50.748 10.283 38.166 0.803 +07 51.43 14.118 31.285 3.167 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_M088_0.6 b/resources/ATtRACT_hsa/motif_SRSF10_M088_0.6 new file mode 100644 index 0000000..47cdabd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_M088_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF10_M088_0.6 + A C G T +01 90.762 3.079 3.079 3.079 +02 0.681 0.681 97.958 0.681 +03 97.958 0.681 0.681 0.681 +04 8.13 0.681 90.509 0.681 +05 97.958 0.681 0.681 0.681 +06 53.13 28.5 17.689 0.681 +07 52.076 21.966 17.322 8.637 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_s104 b/resources/ATtRACT_hsa/motif_SRSF10_s104 new file mode 100644 index 0000000..335e8dc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_s104 @@ -0,0 +1,11 @@ +// +NA SRSF10_s104 + A C G T +01 79.563 0.198 20.04 0.198 +02 79.563 0.198 20.04 0.198 +03 99.405 0.198 0.198 0.198 +04 39.881 0.198 59.722 0.198 +05 59.722 0.198 39.881 0.198 +06 99.405 0.198 0.198 0.198 +07 79.563 0.198 20.04 0.198 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF10_s98 b/resources/ATtRACT_hsa/motif_SRSF10_s98 new file mode 100644 index 0000000..3d0208e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF10_s98 @@ -0,0 +1,15 @@ +// +NA SRSF10_s98 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +11 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF11_1266 b/resources/ATtRACT_hsa/motif_SRSF11_1266 new file mode 100644 index 0000000..3290138 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF11_1266 @@ -0,0 +1,10 @@ +// +NA SRSF11_1266 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1211 b/resources/ATtRACT_hsa/motif_SRSF1_1211 new file mode 100644 index 0000000..93daf10 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1211 @@ -0,0 +1,13 @@ +// +NA SRSF1_1211 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1212 b/resources/ATtRACT_hsa/motif_SRSF1_1212 new file mode 100644 index 0000000..be45b4a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1212 @@ -0,0 +1,12 @@ +// +NA SRSF1_1212 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1213 b/resources/ATtRACT_hsa/motif_SRSF1_1213 new file mode 100644 index 0000000..a80eaa1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1213 @@ -0,0 +1,13 @@ +// +NA SRSF1_1213 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1214 b/resources/ATtRACT_hsa/motif_SRSF1_1214 new file mode 100644 index 0000000..35c3937 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1214 @@ -0,0 +1,14 @@ +// +NA SRSF1_1214 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1215 b/resources/ATtRACT_hsa/motif_SRSF1_1215 new file mode 100644 index 0000000..db105ad --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1215 @@ -0,0 +1,13 @@ +// +NA SRSF1_1215 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1216 b/resources/ATtRACT_hsa/motif_SRSF1_1216 new file mode 100644 index 0000000..5f13cb8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1216 @@ -0,0 +1,11 @@ +// +NA SRSF1_1216 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1217 b/resources/ATtRACT_hsa/motif_SRSF1_1217 new file mode 100644 index 0000000..ceaf785 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1217 @@ -0,0 +1,15 @@ +// +NA SRSF1_1217 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1218 b/resources/ATtRACT_hsa/motif_SRSF1_1218 new file mode 100644 index 0000000..6f3dda2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1218 @@ -0,0 +1,10 @@ +// +NA SRSF1_1218 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1219 b/resources/ATtRACT_hsa/motif_SRSF1_1219 new file mode 100644 index 0000000..a77796d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1219 @@ -0,0 +1,10 @@ +// +NA SRSF1_1219 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1220 b/resources/ATtRACT_hsa/motif_SRSF1_1220 new file mode 100644 index 0000000..cce1c1b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1220 @@ -0,0 +1,10 @@ +// +NA SRSF1_1220 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1221 b/resources/ATtRACT_hsa/motif_SRSF1_1221 new file mode 100644 index 0000000..dd970e4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1221 @@ -0,0 +1,10 @@ +// +NA SRSF1_1221 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1222 b/resources/ATtRACT_hsa/motif_SRSF1_1222 new file mode 100644 index 0000000..21003a3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1222 @@ -0,0 +1,10 @@ +// +NA SRSF1_1222 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1223 b/resources/ATtRACT_hsa/motif_SRSF1_1223 new file mode 100644 index 0000000..74388d8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1223 @@ -0,0 +1,11 @@ +// +NA SRSF1_1223 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1224 b/resources/ATtRACT_hsa/motif_SRSF1_1224 new file mode 100644 index 0000000..e629a04 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1224 @@ -0,0 +1,11 @@ +// +NA SRSF1_1224 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1225 b/resources/ATtRACT_hsa/motif_SRSF1_1225 new file mode 100644 index 0000000..3f9c63d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1225 @@ -0,0 +1,12 @@ +// +NA SRSF1_1225 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1226 b/resources/ATtRACT_hsa/motif_SRSF1_1226 new file mode 100644 index 0000000..5bd6ed6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1226 @@ -0,0 +1,16 @@ +// +NA SRSF1_1226 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 97.115 0.962 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1227 b/resources/ATtRACT_hsa/motif_SRSF1_1227 new file mode 100644 index 0000000..1c88830 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1227 @@ -0,0 +1,13 @@ +// +NA SRSF1_1227 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1228 b/resources/ATtRACT_hsa/motif_SRSF1_1228 new file mode 100644 index 0000000..e6b2130 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1228 @@ -0,0 +1,11 @@ +// +NA SRSF1_1228 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1229 b/resources/ATtRACT_hsa/motif_SRSF1_1229 new file mode 100644 index 0000000..0125316 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1229 @@ -0,0 +1,10 @@ +// +NA SRSF1_1229 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1230 b/resources/ATtRACT_hsa/motif_SRSF1_1230 new file mode 100644 index 0000000..dee47fd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1230 @@ -0,0 +1,14 @@ +// +NA SRSF1_1230 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1231 b/resources/ATtRACT_hsa/motif_SRSF1_1231 new file mode 100644 index 0000000..51aed5e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1231 @@ -0,0 +1,12 @@ +// +NA SRSF1_1231 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1232 b/resources/ATtRACT_hsa/motif_SRSF1_1232 new file mode 100644 index 0000000..78829c9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1232 @@ -0,0 +1,11 @@ +// +NA SRSF1_1232 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1233 b/resources/ATtRACT_hsa/motif_SRSF1_1233 new file mode 100644 index 0000000..c0f66c6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1233 @@ -0,0 +1,11 @@ +// +NA SRSF1_1233 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1234 b/resources/ATtRACT_hsa/motif_SRSF1_1234 new file mode 100644 index 0000000..347c4bd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1234 @@ -0,0 +1,11 @@ +// +NA SRSF1_1234 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1235 b/resources/ATtRACT_hsa/motif_SRSF1_1235 new file mode 100644 index 0000000..cacb843 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1235 @@ -0,0 +1,11 @@ +// +NA SRSF1_1235 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1236 b/resources/ATtRACT_hsa/motif_SRSF1_1236 new file mode 100644 index 0000000..d158d5f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1236 @@ -0,0 +1,11 @@ +// +NA SRSF1_1236 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1237 b/resources/ATtRACT_hsa/motif_SRSF1_1237 new file mode 100644 index 0000000..8cdb825 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1237 @@ -0,0 +1,11 @@ +// +NA SRSF1_1237 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1238 b/resources/ATtRACT_hsa/motif_SRSF1_1238 new file mode 100644 index 0000000..e280920 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1238 @@ -0,0 +1,11 @@ +// +NA SRSF1_1238 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1239 b/resources/ATtRACT_hsa/motif_SRSF1_1239 new file mode 100644 index 0000000..c7f9ca3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1239 @@ -0,0 +1,13 @@ +// +NA SRSF1_1239 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1240 b/resources/ATtRACT_hsa/motif_SRSF1_1240 new file mode 100644 index 0000000..6e3ffa9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1240 @@ -0,0 +1,11 @@ +// +NA SRSF1_1240 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1241 b/resources/ATtRACT_hsa/motif_SRSF1_1241 new file mode 100644 index 0000000..dbb1dce --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1241 @@ -0,0 +1,11 @@ +// +NA SRSF1_1241 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_126 b/resources/ATtRACT_hsa/motif_SRSF1_126 new file mode 100644 index 0000000..c969bd6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_126 @@ -0,0 +1,11 @@ +// +NA SRSF1_126 + A C G T +01 0.031 99.906 0.031 0.031 +02 0.031 49.969 49.969 0.031 +03 49.969 49.969 0.031 0.031 +04 49.969 49.969 0.031 0.031 +05 0.031 49.969 49.969 0.031 +06 0.031 49.969 49.969 0.031 +07 99.906 0.031 0.031 0.031 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1310 b/resources/ATtRACT_hsa/motif_SRSF1_1310 new file mode 100644 index 0000000..f566afd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1310 @@ -0,0 +1,11 @@ +// +NA SRSF1_1310 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1312 b/resources/ATtRACT_hsa/motif_SRSF1_1312 new file mode 100644 index 0000000..dba8f78 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1312 @@ -0,0 +1,12 @@ +// +NA SRSF1_1312 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1326 b/resources/ATtRACT_hsa/motif_SRSF1_1326 new file mode 100644 index 0000000..7ac9574 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1326 @@ -0,0 +1,10 @@ +// +NA SRSF1_1326 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1327 b/resources/ATtRACT_hsa/motif_SRSF1_1327 new file mode 100644 index 0000000..1c23108 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1327 @@ -0,0 +1,13 @@ +// +NA SRSF1_1327 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1335 b/resources/ATtRACT_hsa/motif_SRSF1_1335 new file mode 100644 index 0000000..9ec99a2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1335 @@ -0,0 +1,11 @@ +// +NA SRSF1_1335 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1336 b/resources/ATtRACT_hsa/motif_SRSF1_1336 new file mode 100644 index 0000000..9270d44 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1336 @@ -0,0 +1,14 @@ +// +NA SRSF1_1336 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1345 b/resources/ATtRACT_hsa/motif_SRSF1_1345 new file mode 100644 index 0000000..53bace7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1345 @@ -0,0 +1,11 @@ +// +NA SRSF1_1345 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1349 b/resources/ATtRACT_hsa/motif_SRSF1_1349 new file mode 100644 index 0000000..b5c5005 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1349 @@ -0,0 +1,10 @@ +// +NA SRSF1_1349 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1353 b/resources/ATtRACT_hsa/motif_SRSF1_1353 new file mode 100644 index 0000000..a45ac92 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1353 @@ -0,0 +1,13 @@ +// +NA SRSF1_1353 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1364 b/resources/ATtRACT_hsa/motif_SRSF1_1364 new file mode 100644 index 0000000..b4e6ac8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1364 @@ -0,0 +1,11 @@ +// +NA SRSF1_1364 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1367 b/resources/ATtRACT_hsa/motif_SRSF1_1367 new file mode 100644 index 0000000..d0a8ed7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1367 @@ -0,0 +1,11 @@ +// +NA SRSF1_1367 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1373 b/resources/ATtRACT_hsa/motif_SRSF1_1373 new file mode 100644 index 0000000..1910b8c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1373 @@ -0,0 +1,12 @@ +// +NA SRSF1_1373 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1376 b/resources/ATtRACT_hsa/motif_SRSF1_1376 new file mode 100644 index 0000000..499aad2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1376 @@ -0,0 +1,16 @@ +// +NA SRSF1_1376 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +11 0.962 0.962 97.115 0.962 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1383 b/resources/ATtRACT_hsa/motif_SRSF1_1383 new file mode 100644 index 0000000..4019b56 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1383 @@ -0,0 +1,12 @@ +// +NA SRSF1_1383 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1385 b/resources/ATtRACT_hsa/motif_SRSF1_1385 new file mode 100644 index 0000000..215f887 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1385 @@ -0,0 +1,11 @@ +// +NA SRSF1_1385 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1389 b/resources/ATtRACT_hsa/motif_SRSF1_1389 new file mode 100644 index 0000000..712a4b5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1389 @@ -0,0 +1,13 @@ +// +NA SRSF1_1389 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1390 b/resources/ATtRACT_hsa/motif_SRSF1_1390 new file mode 100644 index 0000000..67b5b9e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1390 @@ -0,0 +1,13 @@ +// +NA SRSF1_1390 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_1393 b/resources/ATtRACT_hsa/motif_SRSF1_1393 new file mode 100644 index 0000000..ffa91b7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_1393 @@ -0,0 +1,11 @@ +// +NA SRSF1_1393 + A C G T +01 0.031 99.906 0.031 0.031 +02 49.969 0.031 49.969 0.031 +03 0.031 49.969 49.969 0.031 +04 49.969 49.969 0.031 0.031 +05 0.031 49.969 49.969 0.031 +06 0.031 0.031 99.906 0.031 +07 49.969 0.031 0.031 49.969 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_167 b/resources/ATtRACT_hsa/motif_SRSF1_167 new file mode 100644 index 0000000..114c649 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_167 @@ -0,0 +1,11 @@ +// +NA SRSF1_167 + A C G T +01 0.008 99.977 0.008 0.008 +02 0.008 49.992 49.992 0.008 +03 0.008 49.992 49.992 0.008 +04 25.0 25.0 25.0 25.0 +05 0.008 49.992 49.992 0.008 +06 0.008 49.992 49.992 0.008 +07 49.992 0.008 49.992 0.008 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_17 b/resources/ATtRACT_hsa/motif_SRSF1_17 new file mode 100644 index 0000000..da9a74b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_17 @@ -0,0 +1,11 @@ +// +NA SRSF1_17 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_325 b/resources/ATtRACT_hsa/motif_SRSF1_325 new file mode 100644 index 0000000..6da88e9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_325 @@ -0,0 +1,11 @@ +// +NA SRSF1_325 + A C G T +01 0.028 0.028 0.028 99.917 +02 0.028 0.028 99.917 0.028 +03 49.972 0.028 49.972 0.028 +04 49.972 0.028 0.028 49.972 +05 0.028 0.028 99.917 0.028 +06 33.324 33.324 33.324 0.028 +07 33.324 33.324 0.028 33.324 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_375 b/resources/ATtRACT_hsa/motif_SRSF1_375 new file mode 100644 index 0000000..46afc30 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_375 @@ -0,0 +1,12 @@ +// +NA SRSF1_375 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_40 b/resources/ATtRACT_hsa/motif_SRSF1_40 new file mode 100644 index 0000000..48118b3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_40 @@ -0,0 +1,10 @@ +// +NA SRSF1_40 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_M102_0.6 b/resources/ATtRACT_hsa/motif_SRSF1_M102_0.6 new file mode 100644 index 0000000..002822a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_M102_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF1_M102_0.6 + A C G T +01 3.301 3.301 90.098 3.301 +02 26.359 0.945 71.75 0.945 +03 89.057 0.945 0.945 9.053 +04 0.945 10.397 76.292 12.366 +05 0.945 0.945 97.165 0.945 +06 76.292 0.945 21.818 0.945 +07 29.326 37.362 17.23 16.081 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_M103_0.6 b/resources/ATtRACT_hsa/motif_SRSF1_M103_0.6 new file mode 100644 index 0000000..8c03d92 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_M103_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF1_M103_0.6 + A C G T +01 0.966 0.966 97.103 0.966 +02 18.615 0.966 79.454 0.966 +03 97.103 0.966 0.966 0.966 +04 0.966 10.656 76.339 12.039 +05 0.966 0.966 97.103 0.966 +06 76.339 0.966 21.73 0.966 +07 31.298 30.82 19.278 18.604 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_M104_0.6 b/resources/ATtRACT_hsa/motif_SRSF1_M104_0.6 new file mode 100644 index 0000000..4de5562 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_M104_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF1_M104_0.6 + A C G T +01 3.284 3.284 90.149 3.284 +02 0.926 0.926 97.222 0.926 +03 97.222 0.926 0.926 0.926 +04 0.926 19.724 68.631 10.719 +05 0.926 0.926 97.222 0.926 +06 59.051 0.926 39.097 0.926 +07 36.091 19.057 36.794 8.058 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_M106_0.6 b/resources/ATtRACT_hsa/motif_SRSF1_M106_0.6 new file mode 100644 index 0000000..df779ab --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_M106_0.6 @@ -0,0 +1,12 @@ +// +NA SRSF1_M106_0.6 + A C G T +01 32.831 40.781 13.194 13.194 +02 89.757 3.414 3.414 3.414 +03 1.016 1.016 96.953 1.016 +04 1.016 1.016 96.953 1.016 +05 96.953 1.016 1.016 1.016 +06 5.769 63.021 16.563 14.646 +07 64.982 18.822 8.098 8.098 +08 33.907 31.37 21.896 12.827 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_M154_0.6 b/resources/ATtRACT_hsa/motif_SRSF1_M154_0.6 new file mode 100644 index 0000000..e08c4a0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_M154_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF1_M154_0.6 + A C G T +01 8.393 8.393 74.822 8.393 +02 3.2 3.2 90.4 3.2 +03 68.289 0.857 29.997 0.857 +04 10.142 0.857 88.144 0.857 +05 7.968 7.924 83.251 0.857 +06 83.237 10.283 3.24 3.24 +07 20.098 22.126 52.067 5.708 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_M272_0.6 b/resources/ATtRACT_hsa/motif_SRSF1_M272_0.6 new file mode 100644 index 0000000..89ffa90 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_M272_0.6 @@ -0,0 +1,12 @@ +// +NA SRSF1_M272_0.6 + A C G T +01 55.0 5.0 30.0 10.0 +02 1.0 5.0 93.0 1.0 +03 84.0 1.0 10.0 5.0 +04 80.0 5.0 10.0 5.0 +05 5.0 5.0 85.0 5.0 +06 58.0 1.0 40.0 1.0 +07 73.0 1.0 25.0 1.0 +08 1.0 88.0 1.0 10.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_M273_0.6 b/resources/ATtRACT_hsa/motif_SRSF1_M273_0.6 new file mode 100644 index 0000000..f040704 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_M273_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF1_M273_0.6 + A C G T +01 82.353 5.882 5.882 5.882 +02 1.0 97.0 1.0 1.0 +03 1.0 1.0 97.0 1.0 +04 1.0 92.118 5.882 1.0 +05 1.0 1.0 86.235 11.765 +06 11.765 86.235 1.0 1.0 +07 52.941 5.882 29.412 11.765 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_M351_0.6 b/resources/ATtRACT_hsa/motif_SRSF1_M351_0.6 new file mode 100644 index 0000000..829f4b3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_M351_0.6 @@ -0,0 +1,14 @@ +// +NA SRSF1_M351_0.6 + A C G T +01 55.556 11.111 11.111 22.222 +02 22.222 1.0 54.556 22.222 +03 2.778 1.0 93.444 2.778 +04 95.222 2.778 1.0 1.0 +05 5.556 90.667 2.778 1.0 +06 54.556 1.0 38.889 5.556 +07 27.778 1.0 68.444 2.778 +08 93.444 2.778 2.778 1.0 +09 22.222 5.556 71.222 1.0 +10 1.0 95.222 1.0 2.778 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_s22 b/resources/ATtRACT_hsa/motif_SRSF1_s22 new file mode 100644 index 0000000..fb389d8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_s22 @@ -0,0 +1,14 @@ +// +NA SRSF1_s22 + A C G T +01 49.95 15.02 15.02 20.01 +02 25.0 0.05 49.95 25.0 +03 0.05 0.05 94.86 5.04 +04 99.85 0.05 0.05 0.05 +05 5.04 89.87 5.04 0.05 +06 59.93 0.05 29.99 10.03 +07 20.01 0.05 74.9 5.04 +08 94.86 5.04 0.05 0.05 +09 20.01 5.04 74.9 0.05 +10 0.05 99.85 0.05 0.05 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_s48 b/resources/ATtRACT_hsa/motif_SRSF1_s48 new file mode 100644 index 0000000..ae1380b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_s48 @@ -0,0 +1,11 @@ +// +NA SRSF1_s48 + A C G T +01 0.036 89.194 7.168 3.602 +02 10.735 39.265 42.832 7.168 +03 25.0 42.832 28.566 3.602 +04 25.0 28.566 35.699 10.735 +05 10.735 25.0 57.097 7.168 +06 25.0 32.133 35.699 7.168 +07 39.265 14.301 32.133 14.301 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_s49 b/resources/ATtRACT_hsa/motif_SRSF1_s49 new file mode 100644 index 0000000..5714aba --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_s49 @@ -0,0 +1,11 @@ +// +NA SRSF1_s49 + A C G T +01 0.034 99.897 0.034 0.034 +02 6.921 65.461 24.139 3.478 +03 34.47 41.357 20.696 3.478 +04 37.913 37.913 17.252 6.921 +05 13.809 17.252 48.244 20.696 +06 13.809 37.913 44.8 3.478 +07 48.244 13.809 24.139 13.809 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_s50 b/resources/ATtRACT_hsa/motif_SRSF1_s50 new file mode 100644 index 0000000..24ba59a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_s50 @@ -0,0 +1,11 @@ +// +NA SRSF1_s50 + A C G T +01 3.879 69.163 26.92 0.038 +02 42.281 0.038 42.281 15.399 +03 0.038 38.441 61.482 0.038 +04 69.163 23.08 0.038 7.719 +05 0.038 42.281 57.642 0.038 +06 0.038 0.038 92.204 7.719 +07 46.121 0.038 30.76 23.08 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_s51 b/resources/ATtRACT_hsa/motif_SRSF1_s51 new file mode 100644 index 0000000..0940066 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_s51 @@ -0,0 +1,11 @@ +// +NA SRSF1_s51 + A C G T +01 49.917 8.389 25.0 16.694 +02 16.694 83.14 0.083 0.083 +03 0.083 8.389 91.445 0.083 +04 0.083 74.834 25.0 0.083 +05 25.0 0.083 66.528 8.389 +06 25.0 74.834 0.083 0.083 +07 49.917 25.0 16.694 8.389 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_s60 b/resources/ATtRACT_hsa/motif_SRSF1_s60 new file mode 100644 index 0000000..6d27935 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_s60 @@ -0,0 +1,12 @@ +// +NA SRSF1_s60 + A C G T +01 41.138 5.927 35.27 17.664 +02 0.059 5.927 93.955 0.059 +03 82.218 0.059 11.796 5.927 +04 70.481 5.927 5.927 17.664 +05 5.927 5.927 82.218 5.927 +06 52.876 0.059 47.007 0.059 +07 88.087 0.059 11.796 0.059 +08 0.059 88.087 0.059 11.796 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF1_s99 b/resources/ATtRACT_hsa/motif_SRSF1_s99 new file mode 100644 index 0000000..918223d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF1_s99 @@ -0,0 +1,11 @@ +// +NA SRSF1_s99 + A C G T +01 10.06 39.94 49.9 0.1 +02 20.02 39.94 29.98 10.06 +03 10.06 29.98 39.94 20.02 +04 10.06 39.94 29.98 20.02 +05 10.06 20.02 59.861 10.06 +06 10.06 29.98 59.861 0.1 +07 10.06 20.02 59.861 10.06 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1160 b/resources/ATtRACT_hsa/motif_SRSF2_1160 new file mode 100644 index 0000000..4882258 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1160 @@ -0,0 +1,9 @@ +// +NA SRSF2_1160 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1161 b/resources/ATtRACT_hsa/motif_SRSF2_1161 new file mode 100644 index 0000000..c157a74 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1161 @@ -0,0 +1,9 @@ +// +NA SRSF2_1161 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1162 b/resources/ATtRACT_hsa/motif_SRSF2_1162 new file mode 100644 index 0000000..2b3c5d6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1162 @@ -0,0 +1,9 @@ +// +NA SRSF2_1162 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1163 b/resources/ATtRACT_hsa/motif_SRSF2_1163 new file mode 100644 index 0000000..5f390ae --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1163 @@ -0,0 +1,9 @@ +// +NA SRSF2_1163 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1164 b/resources/ATtRACT_hsa/motif_SRSF2_1164 new file mode 100644 index 0000000..4ee714f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1164 @@ -0,0 +1,12 @@ +// +NA SRSF2_1164 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1165 b/resources/ATtRACT_hsa/motif_SRSF2_1165 new file mode 100644 index 0000000..cac3b83 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1165 @@ -0,0 +1,12 @@ +// +NA SRSF2_1165 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1166 b/resources/ATtRACT_hsa/motif_SRSF2_1166 new file mode 100644 index 0000000..347bed1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1166 @@ -0,0 +1,12 @@ +// +NA SRSF2_1166 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1167 b/resources/ATtRACT_hsa/motif_SRSF2_1167 new file mode 100644 index 0000000..b9c2e40 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1167 @@ -0,0 +1,14 @@ +// +NA SRSF2_1167 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1168 b/resources/ATtRACT_hsa/motif_SRSF2_1168 new file mode 100644 index 0000000..7670b7a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1168 @@ -0,0 +1,12 @@ +// +NA SRSF2_1168 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1169 b/resources/ATtRACT_hsa/motif_SRSF2_1169 new file mode 100644 index 0000000..9a25f10 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1169 @@ -0,0 +1,14 @@ +// +NA SRSF2_1169 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1170 b/resources/ATtRACT_hsa/motif_SRSF2_1170 new file mode 100644 index 0000000..8b655c2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1170 @@ -0,0 +1,11 @@ +// +NA SRSF2_1170 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1171 b/resources/ATtRACT_hsa/motif_SRSF2_1171 new file mode 100644 index 0000000..b517305 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1171 @@ -0,0 +1,10 @@ +// +NA SRSF2_1171 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1172 b/resources/ATtRACT_hsa/motif_SRSF2_1172 new file mode 100644 index 0000000..f520fbe --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1172 @@ -0,0 +1,12 @@ +// +NA SRSF2_1172 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1173 b/resources/ATtRACT_hsa/motif_SRSF2_1173 new file mode 100644 index 0000000..7597506 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1173 @@ -0,0 +1,12 @@ +// +NA SRSF2_1173 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1174 b/resources/ATtRACT_hsa/motif_SRSF2_1174 new file mode 100644 index 0000000..bb98c71 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1174 @@ -0,0 +1,12 @@ +// +NA SRSF2_1174 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1175 b/resources/ATtRACT_hsa/motif_SRSF2_1175 new file mode 100644 index 0000000..796d425 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1175 @@ -0,0 +1,11 @@ +// +NA SRSF2_1175 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1176 b/resources/ATtRACT_hsa/motif_SRSF2_1176 new file mode 100644 index 0000000..d066c10 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1176 @@ -0,0 +1,11 @@ +// +NA SRSF2_1176 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1177 b/resources/ATtRACT_hsa/motif_SRSF2_1177 new file mode 100644 index 0000000..70c6c38 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1177 @@ -0,0 +1,16 @@ +// +NA SRSF2_1177 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 97.115 0.962 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1178 b/resources/ATtRACT_hsa/motif_SRSF2_1178 new file mode 100644 index 0000000..8b4665a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1178 @@ -0,0 +1,13 @@ +// +NA SRSF2_1178 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1179 b/resources/ATtRACT_hsa/motif_SRSF2_1179 new file mode 100644 index 0000000..6b4578d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1179 @@ -0,0 +1,10 @@ +// +NA SRSF2_1179 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1180 b/resources/ATtRACT_hsa/motif_SRSF2_1180 new file mode 100644 index 0000000..949f6fc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1180 @@ -0,0 +1,14 @@ +// +NA SRSF2_1180 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1181 b/resources/ATtRACT_hsa/motif_SRSF2_1181 new file mode 100644 index 0000000..57f7c6b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1181 @@ -0,0 +1,12 @@ +// +NA SRSF2_1181 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1182 b/resources/ATtRACT_hsa/motif_SRSF2_1182 new file mode 100644 index 0000000..c8abad7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1182 @@ -0,0 +1,11 @@ +// +NA SRSF2_1182 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1183 b/resources/ATtRACT_hsa/motif_SRSF2_1183 new file mode 100644 index 0000000..5ddc046 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1183 @@ -0,0 +1,11 @@ +// +NA SRSF2_1183 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1311 b/resources/ATtRACT_hsa/motif_SRSF2_1311 new file mode 100644 index 0000000..416386a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1311 @@ -0,0 +1,12 @@ +// +NA SRSF2_1311 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1323 b/resources/ATtRACT_hsa/motif_SRSF2_1323 new file mode 100644 index 0000000..158e7f2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1323 @@ -0,0 +1,12 @@ +// +NA SRSF2_1323 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1334 b/resources/ATtRACT_hsa/motif_SRSF2_1334 new file mode 100644 index 0000000..c58dd5f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1334 @@ -0,0 +1,12 @@ +// +NA SRSF2_1334 + A C G T +01 0.016 0.016 99.953 0.016 +02 49.984 0.016 49.984 0.016 +03 0.016 49.984 0.016 49.984 +04 0.016 49.984 0.016 49.984 +05 49.984 49.984 0.016 0.016 +06 0.016 99.953 0.016 0.016 +07 0.016 49.984 0.016 49.984 +08 49.984 0.016 49.984 0.016 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1344 b/resources/ATtRACT_hsa/motif_SRSF2_1344 new file mode 100644 index 0000000..579b13d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1344 @@ -0,0 +1,16 @@ +// +NA SRSF2_1344 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 97.115 0.962 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1348 b/resources/ATtRACT_hsa/motif_SRSF2_1348 new file mode 100644 index 0000000..572e0d3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1348 @@ -0,0 +1,11 @@ +// +NA SRSF2_1348 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1352 b/resources/ATtRACT_hsa/motif_SRSF2_1352 new file mode 100644 index 0000000..9e98e50 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1352 @@ -0,0 +1,13 @@ +// +NA SRSF2_1352 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1357 b/resources/ATtRACT_hsa/motif_SRSF2_1357 new file mode 100644 index 0000000..98d0250 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1357 @@ -0,0 +1,10 @@ +// +NA SRSF2_1357 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1363 b/resources/ATtRACT_hsa/motif_SRSF2_1363 new file mode 100644 index 0000000..95045d5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1363 @@ -0,0 +1,8 @@ +// +NA SRSF2_1363 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1380 b/resources/ATtRACT_hsa/motif_SRSF2_1380 new file mode 100644 index 0000000..e226534 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1380 @@ -0,0 +1,13 @@ +// +NA SRSF2_1380 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_1395 b/resources/ATtRACT_hsa/motif_SRSF2_1395 new file mode 100644 index 0000000..ad79e13 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_1395 @@ -0,0 +1,13 @@ +// +NA SRSF2_1395 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_439 b/resources/ATtRACT_hsa/motif_SRSF2_439 new file mode 100644 index 0000000..3a755ac --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_439 @@ -0,0 +1,10 @@ +// +NA SRSF2_439 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_502 b/resources/ATtRACT_hsa/motif_SRSF2_502 new file mode 100644 index 0000000..faffa16 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_502 @@ -0,0 +1,10 @@ +// +NA SRSF2_502 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_M070_0.6 b/resources/ATtRACT_hsa/motif_SRSF2_M070_0.6 new file mode 100644 index 0000000..1c748ba --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_M070_0.6 @@ -0,0 +1,12 @@ +// +NA SRSF2_M070_0.6 + A C G T +01 60.74 13.087 13.087 13.087 +02 1.642 1.642 95.074 1.642 +03 1.642 1.642 95.074 1.642 +04 85.971 1.642 1.642 10.745 +05 1.642 1.642 95.074 1.642 +06 58.261 1.642 10.519 29.578 +07 30.485 1.642 38.971 28.902 +08 32.077 13.564 40.796 13.564 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_M274_0.6 b/resources/ATtRACT_hsa/motif_SRSF2_M274_0.6 new file mode 100644 index 0000000..d632b6a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_M274_0.6 @@ -0,0 +1,13 @@ +// +NA SRSF2_M274_0.6 + A C G T +01 1.0 1.0 97.0 1.0 +02 9.091 9.091 1.0 80.818 +03 9.091 1.0 1.0 88.909 +04 1.0 88.909 9.091 1.0 +05 1.0 27.273 70.727 1.0 +06 97.0 1.0 1.0 1.0 +07 1.0 1.0 97.0 1.0 +08 9.091 1.0 27.273 62.636 +09 53.545 1.0 9.091 36.364 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_M332_0.6 b/resources/ATtRACT_hsa/motif_SRSF2_M332_0.6 new file mode 100644 index 0000000..1c01544 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_M332_0.6 @@ -0,0 +1,14 @@ +// +NA SRSF2_M332_0.6 + A C G T +01 6.897 1.0 20.69 71.414 +02 1.0 1.0 97.0 1.0 +03 6.897 1.0 1.0 91.103 +04 3.448 1.0 1.0 94.552 +05 1.0 97.0 1.0 1.0 +06 1.0 53.172 44.828 1.0 +07 92.103 1.0 3.448 3.448 +08 1.0 1.0 97.0 1.0 +09 58.621 10.345 3.448 27.586 +10 17.241 3.448 13.793 65.517 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_M352_0.6 b/resources/ATtRACT_hsa/motif_SRSF2_M352_0.6 new file mode 100644 index 0000000..3ac4e8b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_M352_0.6 @@ -0,0 +1,13 @@ +// +NA SRSF2_M352_0.6 + A C G T +01 88.462 3.846 3.846 3.846 +02 3.846 3.846 91.308 1.0 +03 3.846 46.154 49.0 1.0 +04 79.769 15.385 3.846 1.0 +05 1.0 1.0 97.0 1.0 +06 73.077 7.692 3.846 15.385 +07 11.538 1.0 83.615 3.846 +08 23.077 3.846 19.231 53.846 +09 46.154 7.692 11.538 34.615 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s37 b/resources/ATtRACT_hsa/motif_SRSF2_s37 new file mode 100644 index 0000000..9e38dc2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s37 @@ -0,0 +1,11 @@ +// +NA SRSF2_s37 + A C G T +01 0.49 0.49 0.49 98.529 +02 0.49 0.49 98.529 0.49 +03 0.49 98.529 0.49 0.49 +04 0.49 49.51 49.51 0.49 +05 0.49 0.49 98.529 0.49 +06 0.49 49.51 0.49 49.51 +07 0.49 98.529 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s46 b/resources/ATtRACT_hsa/motif_SRSF2_s46 new file mode 100644 index 0000000..47e26a1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s46 @@ -0,0 +1,13 @@ +// +NA SRSF2_s46 + A C G T +01 90.352 4.8 0.048 4.8 +02 0.048 4.8 95.105 0.048 +03 4.8 38.07 57.082 0.048 +04 76.093 19.059 4.8 0.048 +05 0.048 0.048 99.857 0.048 +06 71.34 9.553 0.048 19.059 +07 14.306 0.048 80.846 4.8 +08 28.565 4.8 14.306 52.329 +09 47.576 9.553 14.306 28.565 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s47 b/resources/ATtRACT_hsa/motif_SRSF2_s47 new file mode 100644 index 0000000..af6fc09 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s47 @@ -0,0 +1,13 @@ +// +NA SRSF2_s47 + A C G T +01 0.1 0.1 99.701 0.1 +02 20.02 10.06 0.1 69.821 +03 10.06 10.06 0.1 79.781 +04 0.1 79.781 20.02 0.1 +05 0.1 29.98 69.821 0.1 +06 99.701 0.1 0.1 0.1 +07 0.1 0.1 99.701 0.1 +08 10.06 0.1 29.98 59.861 +09 49.9 0.1 10.06 39.94 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s52 b/resources/ATtRACT_hsa/motif_SRSF2_s52 new file mode 100644 index 0000000..a8468a4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s52 @@ -0,0 +1,11 @@ +// +NA SRSF2_s52 + A C G T +01 14.347 42.756 42.756 0.142 +02 28.551 0.142 71.165 0.142 +03 0.142 71.165 28.551 0.142 +04 56.96 42.756 0.142 0.142 +05 14.347 14.347 56.96 14.347 +06 14.347 14.347 71.165 0.142 +07 28.551 14.347 28.551 28.551 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s53 b/resources/ATtRACT_hsa/motif_SRSF2_s53 new file mode 100644 index 0000000..48296c7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s53 @@ -0,0 +1,11 @@ +// +NA SRSF2_s53 + A C G T +01 72.554 0.091 9.149 18.207 +02 0.091 27.264 72.554 0.091 +03 0.091 0.091 90.67 9.149 +04 72.554 18.207 9.149 0.091 +05 9.149 0.091 81.612 9.149 +06 81.612 9.149 9.149 0.091 +07 9.149 9.149 18.207 63.496 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s55 b/resources/ATtRACT_hsa/motif_SRSF2_s55 new file mode 100644 index 0000000..06b7884 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s55 @@ -0,0 +1,15 @@ +// +NA SRSF2_s55 + A C G T +01 27.264 0.091 63.496 9.149 +02 45.38 18.207 27.264 9.149 +03 0.091 0.091 99.728 0.091 +04 0.091 99.728 0.091 0.091 +05 99.728 0.091 0.091 0.091 +06 0.091 0.091 99.728 0.091 +07 0.091 0.091 0.091 99.728 +08 90.67 0.091 9.149 0.091 +09 0.091 0.091 99.728 0.091 +10 0.091 0.091 54.438 45.38 +11 0.091 45.38 54.438 0.091 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s56 b/resources/ATtRACT_hsa/motif_SRSF2_s56 new file mode 100644 index 0000000..f3fe8dc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s56 @@ -0,0 +1,15 @@ +// +NA SRSF2_s56 + A C G T +01 0.124 0.124 99.627 0.124 +02 25.0 0.124 25.0 49.876 +03 37.438 0.124 0.124 62.313 +04 49.876 0.124 0.124 49.876 +05 0.124 99.627 0.124 0.124 +06 0.124 87.189 12.562 0.124 +07 49.876 12.562 0.124 37.438 +08 0.124 0.124 99.627 0.124 +09 0.124 62.313 0.124 37.438 +10 12.562 12.562 0.124 74.751 +11 87.189 12.562 0.124 0.124 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s57 b/resources/ATtRACT_hsa/motif_SRSF2_s57 new file mode 100644 index 0000000..647ae9b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s57 @@ -0,0 +1,14 @@ +// +NA SRSF2_s57 + A C G T +01 14.316 7.194 71.296 7.194 +02 7.194 7.194 78.419 7.194 +03 7.194 0.071 71.296 21.439 +04 21.439 0.071 28.561 49.929 +05 92.664 0.071 7.194 0.071 +06 21.439 7.194 7.194 64.174 +07 0.071 0.071 99.786 0.071 +08 0.071 99.786 0.071 0.071 +09 0.071 14.316 7.194 78.419 +10 0.071 0.071 92.664 7.194 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s58 b/resources/ATtRACT_hsa/motif_SRSF2_s58 new file mode 100644 index 0000000..21ea807 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s58 @@ -0,0 +1,14 @@ +// +NA SRSF2_s58 + A C G T +01 13.364 6.715 13.364 66.556 +02 0.066 0.066 99.801 0.066 +03 13.364 0.066 0.066 86.503 +04 6.715 0.066 0.066 93.152 +05 0.066 99.801 0.066 0.066 +06 0.066 59.907 39.96 0.066 +07 86.503 0.066 6.715 6.715 +08 0.066 0.066 99.801 0.066 +09 46.609 20.013 6.715 26.662 +10 26.662 6.715 20.013 46.609 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF2_s59 b/resources/ATtRACT_hsa/motif_SRSF2_s59 new file mode 100644 index 0000000..d0d7c56 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF2_s59 @@ -0,0 +1,12 @@ +// +NA SRSF2_s59 + A C G T +01 8.352 5.577 83.269 2.802 +02 22.225 0.028 61.071 16.676 +03 16.676 52.747 2.802 27.775 +04 0.028 55.522 0.028 44.423 +05 19.451 36.099 27.775 16.676 +06 13.901 49.972 30.549 5.577 +07 22.225 27.775 2.802 47.198 +08 27.775 0.028 72.17 0.028 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1244 b/resources/ATtRACT_hsa/motif_SRSF3_1244 new file mode 100644 index 0000000..bc3818c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1244 @@ -0,0 +1,12 @@ +// +NA SRSF3_1244 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1245 b/resources/ATtRACT_hsa/motif_SRSF3_1245 new file mode 100644 index 0000000..1d1ac0a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1245 @@ -0,0 +1,12 @@ +// +NA SRSF3_1245 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1246 b/resources/ATtRACT_hsa/motif_SRSF3_1246 new file mode 100644 index 0000000..6749350 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1246 @@ -0,0 +1,12 @@ +// +NA SRSF3_1246 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1247 b/resources/ATtRACT_hsa/motif_SRSF3_1247 new file mode 100644 index 0000000..3bebd72 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1247 @@ -0,0 +1,11 @@ +// +NA SRSF3_1247 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1248 b/resources/ATtRACT_hsa/motif_SRSF3_1248 new file mode 100644 index 0000000..807c7ff --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1248 @@ -0,0 +1,11 @@ +// +NA SRSF3_1248 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1249 b/resources/ATtRACT_hsa/motif_SRSF3_1249 new file mode 100644 index 0000000..e562970 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1249 @@ -0,0 +1,10 @@ +// +NA SRSF3_1249 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1250 b/resources/ATtRACT_hsa/motif_SRSF3_1250 new file mode 100644 index 0000000..f95cd36 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1250 @@ -0,0 +1,10 @@ +// +NA SRSF3_1250 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1251 b/resources/ATtRACT_hsa/motif_SRSF3_1251 new file mode 100644 index 0000000..098e3ce --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1251 @@ -0,0 +1,9 @@ +// +NA SRSF3_1251 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1252 b/resources/ATtRACT_hsa/motif_SRSF3_1252 new file mode 100644 index 0000000..e177a84 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1252 @@ -0,0 +1,9 @@ +// +NA SRSF3_1252 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1253 b/resources/ATtRACT_hsa/motif_SRSF3_1253 new file mode 100644 index 0000000..f2bbd7d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1253 @@ -0,0 +1,8 @@ +// +NA SRSF3_1253 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1254 b/resources/ATtRACT_hsa/motif_SRSF3_1254 new file mode 100644 index 0000000..107ae56 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1254 @@ -0,0 +1,8 @@ +// +NA SRSF3_1254 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1255 b/resources/ATtRACT_hsa/motif_SRSF3_1255 new file mode 100644 index 0000000..32763b1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1255 @@ -0,0 +1,14 @@ +// +NA SRSF3_1255 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 97.115 0.962 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_1354 b/resources/ATtRACT_hsa/motif_SRSF3_1354 new file mode 100644 index 0000000..8a0b14e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_1354 @@ -0,0 +1,14 @@ +// +NA SRSF3_1354 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 97.115 0.962 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_s39 b/resources/ATtRACT_hsa/motif_SRSF3_s39 new file mode 100644 index 0000000..90e4d06 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_s39 @@ -0,0 +1,11 @@ +// +NA SRSF3_s39 + A C G T +01 0.083 58.223 8.389 33.306 +02 25.0 8.389 8.389 58.223 +03 58.223 0.083 0.083 41.611 +04 0.083 99.751 0.083 0.083 +05 83.14 0.083 16.694 0.083 +06 91.445 0.083 8.389 0.083 +07 8.389 83.14 0.083 8.389 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_s40 b/resources/ATtRACT_hsa/motif_SRSF3_s40 new file mode 100644 index 0000000..4f3e44c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_s40 @@ -0,0 +1,12 @@ +// +NA SRSF3_s40 + A C G T +01 26.313 31.565 10.557 31.565 +02 47.321 5.305 5.305 42.069 +03 5.305 94.59 0.053 0.053 +04 21.061 0.053 0.053 78.834 +05 5.305 5.305 0.053 89.338 +06 0.053 94.59 0.053 5.305 +07 94.59 0.053 0.053 5.305 +08 15.809 26.313 5.305 52.574 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_s41 b/resources/ATtRACT_hsa/motif_SRSF3_s41 new file mode 100644 index 0000000..a4fe523 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_s41 @@ -0,0 +1,13 @@ +// +NA SRSF3_s41 + A C G T +01 42.823 4.8 0.048 52.329 +02 0.048 95.105 4.8 0.048 +03 80.846 0.048 0.048 19.059 +04 23.812 0.048 4.8 71.34 +05 4.8 95.105 0.048 0.048 +06 4.8 0.048 95.105 0.048 +07 76.093 9.553 0.048 14.306 +08 0.048 38.07 0.048 61.835 +09 9.553 33.317 4.8 52.329 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF3_s81 b/resources/ATtRACT_hsa/motif_SRSF3_s81 new file mode 100644 index 0000000..51fe6cd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF3_s81 @@ -0,0 +1,12 @@ +// +NA SRSF3_s81 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF4_1274 b/resources/ATtRACT_hsa/motif_SRSF4_1274 new file mode 100644 index 0000000..9bdba83 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF4_1274 @@ -0,0 +1,13 @@ +// +NA SRSF4_1274 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF4_1275 b/resources/ATtRACT_hsa/motif_SRSF4_1275 new file mode 100644 index 0000000..a5d4ac5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF4_1275 @@ -0,0 +1,12 @@ +// +NA SRSF4_1275 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF5_1263 b/resources/ATtRACT_hsa/motif_SRSF5_1263 new file mode 100644 index 0000000..65b7934 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF5_1263 @@ -0,0 +1,13 @@ +// +NA SRSF5_1263 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF5_1264 b/resources/ATtRACT_hsa/motif_SRSF5_1264 new file mode 100644 index 0000000..d607e5f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF5_1264 @@ -0,0 +1,11 @@ +// +NA SRSF5_1264 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF5_1265 b/resources/ATtRACT_hsa/motif_SRSF5_1265 new file mode 100644 index 0000000..0b7df2e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF5_1265 @@ -0,0 +1,12 @@ +// +NA SRSF5_1265 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF5_1330 b/resources/ATtRACT_hsa/motif_SRSF5_1330 new file mode 100644 index 0000000..e367a4a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF5_1330 @@ -0,0 +1,11 @@ +// +NA SRSF5_1330 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF5_1333 b/resources/ATtRACT_hsa/motif_SRSF5_1333 new file mode 100644 index 0000000..f02a459 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF5_1333 @@ -0,0 +1,11 @@ +// +NA SRSF5_1333 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF5_1343 b/resources/ATtRACT_hsa/motif_SRSF5_1343 new file mode 100644 index 0000000..11765df --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF5_1343 @@ -0,0 +1,10 @@ +// +NA SRSF5_1343 + A C G T +01 0.031 49.969 0.031 49.969 +02 49.969 0.031 49.969 0.031 +03 0.031 99.906 0.031 0.031 +04 49.969 0.031 49.969 0.031 +05 0.031 0.031 49.969 49.969 +06 49.969 49.969 0.031 0.031 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF5_1355 b/resources/ATtRACT_hsa/motif_SRSF5_1355 new file mode 100644 index 0000000..1b5db72 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF5_1355 @@ -0,0 +1,13 @@ +// +NA SRSF5_1355 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF5_s19 b/resources/ATtRACT_hsa/motif_SRSF5_s19 new file mode 100644 index 0000000..e18a76f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF5_s19 @@ -0,0 +1,9 @@ +// +NA SRSF5_s19 + A C G T +01 64.613 0.059 17.664 17.664 +02 5.927 88.087 5.927 0.059 +03 47.007 11.796 17.664 23.533 +04 0.059 11.796 88.087 0.059 +05 0.059 47.007 52.876 0.059 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_1267 b/resources/ATtRACT_hsa/motif_SRSF6_1267 new file mode 100644 index 0000000..69407e8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_1267 @@ -0,0 +1,13 @@ +// +NA SRSF6_1267 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_1268 b/resources/ATtRACT_hsa/motif_SRSF6_1268 new file mode 100644 index 0000000..deb48ec --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_1268 @@ -0,0 +1,10 @@ +// +NA SRSF6_1268 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_1269 b/resources/ATtRACT_hsa/motif_SRSF6_1269 new file mode 100644 index 0000000..bdb4d5a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_1269 @@ -0,0 +1,10 @@ +// +NA SRSF6_1269 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_1270 b/resources/ATtRACT_hsa/motif_SRSF6_1270 new file mode 100644 index 0000000..42f1734 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_1270 @@ -0,0 +1,12 @@ +// +NA SRSF6_1270 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_1271 b/resources/ATtRACT_hsa/motif_SRSF6_1271 new file mode 100644 index 0000000..d1e7e4d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_1271 @@ -0,0 +1,16 @@ +// +NA SRSF6_1271 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +12 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_1272 b/resources/ATtRACT_hsa/motif_SRSF6_1272 new file mode 100644 index 0000000..32841dc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_1272 @@ -0,0 +1,16 @@ +// +NA SRSF6_1272 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +12 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_1273 b/resources/ATtRACT_hsa/motif_SRSF6_1273 new file mode 100644 index 0000000..4d064cd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_1273 @@ -0,0 +1,16 @@ +// +NA SRSF6_1273 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 97.115 0.962 +12 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_1384 b/resources/ATtRACT_hsa/motif_SRSF6_1384 new file mode 100644 index 0000000..1b28802 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_1384 @@ -0,0 +1,11 @@ +// +NA SRSF6_1384 + A C G T +01 0.031 49.969 0.031 49.969 +02 0.031 49.969 0.031 49.969 +03 49.969 0.031 0.031 49.969 +04 0.031 99.906 0.031 0.031 +05 49.969 0.031 0.031 49.969 +06 0.031 49.969 49.969 0.031 +07 0.031 0.031 99.906 0.031 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_1392 b/resources/ATtRACT_hsa/motif_SRSF6_1392 new file mode 100644 index 0000000..cf6a635 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_1392 @@ -0,0 +1,13 @@ +// +NA SRSF6_1392 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF6_s42 b/resources/ATtRACT_hsa/motif_SRSF6_s42 new file mode 100644 index 0000000..1774a00 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF6_s42 @@ -0,0 +1,10 @@ +// +NA SRSF6_s42 + A C G T +01 25.0 18.766 18.766 37.469 +02 18.766 37.469 37.469 6.297 +03 0.062 99.813 0.062 0.062 +04 0.062 0.062 99.813 0.062 +05 0.062 0.062 43.703 56.172 +06 37.469 49.938 12.531 0.062 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_1332 b/resources/ATtRACT_hsa/motif_SRSF7_1332 new file mode 100644 index 0000000..b6542ba --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_1332 @@ -0,0 +1,16 @@ +// +NA SRSF7_1332 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 97.115 0.962 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_1360 b/resources/ATtRACT_hsa/motif_SRSF7_1360 new file mode 100644 index 0000000..2993069 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_1360 @@ -0,0 +1,13 @@ +// +NA SRSF7_1360 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_583 b/resources/ATtRACT_hsa/motif_SRSF7_583 new file mode 100644 index 0000000..ec83438 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_583 @@ -0,0 +1,13 @@ +// +NA SRSF7_583 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_584 b/resources/ATtRACT_hsa/motif_SRSF7_584 new file mode 100644 index 0000000..b8f58f1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_584 @@ -0,0 +1,10 @@ +// +NA SRSF7_584 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_585 b/resources/ATtRACT_hsa/motif_SRSF7_585 new file mode 100644 index 0000000..a0dd4fa --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_585 @@ -0,0 +1,10 @@ +// +NA SRSF7_585 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_586 b/resources/ATtRACT_hsa/motif_SRSF7_586 new file mode 100644 index 0000000..4d04bda --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_586 @@ -0,0 +1,10 @@ +// +NA SRSF7_586 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_587 b/resources/ATtRACT_hsa/motif_SRSF7_587 new file mode 100644 index 0000000..70f9fe2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_587 @@ -0,0 +1,11 @@ +// +NA SRSF7_587 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_588 b/resources/ATtRACT_hsa/motif_SRSF7_588 new file mode 100644 index 0000000..daf8e05 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_588 @@ -0,0 +1,16 @@ +// +NA SRSF7_588 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 97.115 0.962 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_589 b/resources/ATtRACT_hsa/motif_SRSF7_589 new file mode 100644 index 0000000..702fb3d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_589 @@ -0,0 +1,13 @@ +// +NA SRSF7_589 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_590 b/resources/ATtRACT_hsa/motif_SRSF7_590 new file mode 100644 index 0000000..23cc9c0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_590 @@ -0,0 +1,14 @@ +// +NA SRSF7_590 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_591 b/resources/ATtRACT_hsa/motif_SRSF7_591 new file mode 100644 index 0000000..950588d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_591 @@ -0,0 +1,12 @@ +// +NA SRSF7_591 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_M071_0.6 b/resources/ATtRACT_hsa/motif_SRSF7_M071_0.6 new file mode 100644 index 0000000..a5b7513 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_M071_0.6 @@ -0,0 +1,12 @@ +// +NA SRSF7_M071_0.6 + A C G T +01 20.325 12.651 54.373 12.651 +02 77.074 7.642 7.642 7.642 +03 0.853 97.441 0.853 0.853 +04 0.853 0.853 97.441 0.853 +05 97.441 0.853 0.853 0.853 +06 0.853 97.441 0.853 0.853 +07 15.269 5.716 73.298 5.716 +08 34.038 13.214 39.533 13.214 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_M331_0.6 b/resources/ATtRACT_hsa/motif_SRSF7_M331_0.6 new file mode 100644 index 0000000..26e82f4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_M331_0.6 @@ -0,0 +1,14 @@ +// +NA SRSF7_M331_0.6 + A C G T +01 79.07 13.953 2.326 4.651 +02 6.977 2.326 83.721 6.977 +03 91.023 6.977 1.0 1.0 +04 1.0 95.674 1.0 2.326 +05 13.953 2.326 39.535 44.186 +06 94.349 2.326 1.0 2.326 +07 1.0 87.372 4.651 6.977 +08 11.628 1.0 86.372 1.0 +09 71.093 11.628 1.0 16.279 +10 6.977 20.93 13.953 58.14 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_M353_0.6 b/resources/ATtRACT_hsa/motif_SRSF7_M353_0.6 new file mode 100644 index 0000000..f06b7d9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_M353_0.6 @@ -0,0 +1,13 @@ +// +NA SRSF7_M353_0.6 + A C G T +01 71.0 16.0 1.0 12.0 +02 8.0 87.0 1.0 4.0 +03 1.0 1.0 94.0 4.0 +04 97.0 1.0 1.0 1.0 +05 4.0 1.0 71.0 24.0 +06 78.0 1.0 1.0 20.0 +07 1.0 4.0 83.0 12.0 +08 83.0 12.0 1.0 4.0 +09 24.0 43.0 1.0 32.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_s45 b/resources/ATtRACT_hsa/motif_SRSF7_s45 new file mode 100644 index 0000000..9971498 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_s45 @@ -0,0 +1,13 @@ +// +NA SRSF7_s45 + A C G T +01 61.031 22.228 0.055 16.685 +02 11.142 83.204 0.055 5.599 +03 0.055 0.055 94.29 5.599 +04 99.834 0.055 0.055 0.055 +05 5.599 0.055 66.574 27.772 +06 77.661 0.055 0.055 22.228 +07 0.055 5.599 77.661 16.685 +08 77.661 16.685 0.055 5.599 +09 27.772 44.401 0.055 27.772 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_s82 b/resources/ATtRACT_hsa/motif_SRSF7_s82 new file mode 100644 index 0000000..b888191 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_s82 @@ -0,0 +1,13 @@ +// +NA SRSF7_s82 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF7_s83 b/resources/ATtRACT_hsa/motif_SRSF7_s83 new file mode 100644 index 0000000..84422ef --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF7_s83 @@ -0,0 +1,10 @@ +// +NA SRSF7_s83 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF9_1256 b/resources/ATtRACT_hsa/motif_SRSF9_1256 new file mode 100644 index 0000000..eca0896 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF9_1256 @@ -0,0 +1,9 @@ +// +NA SRSF9_1256 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF9_1257 b/resources/ATtRACT_hsa/motif_SRSF9_1257 new file mode 100644 index 0000000..4749b8e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF9_1257 @@ -0,0 +1,11 @@ +// +NA SRSF9_1257 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF9_1258 b/resources/ATtRACT_hsa/motif_SRSF9_1258 new file mode 100644 index 0000000..1557e18 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF9_1258 @@ -0,0 +1,9 @@ +// +NA SRSF9_1258 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF9_M065_0.6 b/resources/ATtRACT_hsa/motif_SRSF9_M065_0.6 new file mode 100644 index 0000000..cee5130 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF9_M065_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF9_M065_0.6 + A C G T +01 8.309 8.309 66.149 17.232 +02 3.728 3.728 88.817 3.728 +03 54.657 1.407 42.528 1.407 +04 50.353 11.057 1.407 37.182 +05 1.407 1.407 95.778 1.407 +06 9.157 24.235 65.201 1.407 +07 69.061 23.238 3.85 3.85 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF9_M072_0.6 b/resources/ATtRACT_hsa/motif_SRSF9_M072_0.6 new file mode 100644 index 0000000..045dbe1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF9_M072_0.6 @@ -0,0 +1,11 @@ +// +NA SRSF9_M072_0.6 + A C G T +01 88.467 3.844 3.844 3.844 +02 10.059 1.507 68.21 20.224 +03 10.17 1.507 86.815 1.507 +04 78.264 1.507 10.059 10.17 +05 19.52 20.754 49.643 10.083 +06 29.416 67.569 1.507 1.507 +07 64.547 8.615 18.223 8.615 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF9_M333_0.6 b/resources/ATtRACT_hsa/motif_SRSF9_M333_0.6 new file mode 100644 index 0000000..97774b5 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF9_M333_0.6 @@ -0,0 +1,9 @@ +// +NA SRSF9_M333_0.6 + A C G T +01 80.081 8.108 1.0 10.811 +02 2.703 5.405 90.892 1.0 +03 2.703 27.027 69.27 1.0 +04 88.189 8.108 1.0 2.703 +05 13.514 45.946 32.432 8.108 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SRSF9_s97 b/resources/ATtRACT_hsa/motif_SRSF9_s97 new file mode 100644 index 0000000..bf0a13b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SRSF9_s97 @@ -0,0 +1,9 @@ +// +NA SRSF9_s97 + A C G T +01 66.556 20.013 0.066 13.364 +02 6.715 6.715 86.503 0.066 +03 6.715 20.013 73.205 0.066 +04 86.503 6.715 0.066 6.715 +05 13.364 46.609 26.662 13.364 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SSB_457 b/resources/ATtRACT_hsa/motif_SSB_457 new file mode 100644 index 0000000..514b818 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SSB_457 @@ -0,0 +1,9 @@ +// +NA SSB_457 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SSB_521 b/resources/ATtRACT_hsa/motif_SSB_521 new file mode 100644 index 0000000..a94e35e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SSB_521 @@ -0,0 +1,8 @@ +// +NA SSB_521 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SSB_548 b/resources/ATtRACT_hsa/motif_SSB_548 new file mode 100644 index 0000000..33ac166 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SSB_548 @@ -0,0 +1,8 @@ +// +NA SSB_548 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SSB_58 b/resources/ATtRACT_hsa/motif_SSB_58 new file mode 100644 index 0000000..0721504 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SSB_58 @@ -0,0 +1,13 @@ +// +NA SSB_58 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SUPV3L1_330 b/resources/ATtRACT_hsa/motif_SUPV3L1_330 new file mode 100644 index 0000000..50eb99e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SUPV3L1_330 @@ -0,0 +1,10 @@ +// +NA SUPV3L1_330 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SYNCRIP_1062 b/resources/ATtRACT_hsa/motif_SYNCRIP_1062 new file mode 100644 index 0000000..2643e90 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SYNCRIP_1062 @@ -0,0 +1,11 @@ +// +NA SYNCRIP_1062 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SYNCRIP_1063 b/resources/ATtRACT_hsa/motif_SYNCRIP_1063 new file mode 100644 index 0000000..e2d96ac --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SYNCRIP_1063 @@ -0,0 +1,11 @@ +// +NA SYNCRIP_1063 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SYNCRIP_1064 b/resources/ATtRACT_hsa/motif_SYNCRIP_1064 new file mode 100644 index 0000000..25fc0c2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SYNCRIP_1064 @@ -0,0 +1,11 @@ +// +NA SYNCRIP_1064 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SYNCRIP_1065 b/resources/ATtRACT_hsa/motif_SYNCRIP_1065 new file mode 100644 index 0000000..bc002e0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SYNCRIP_1065 @@ -0,0 +1,11 @@ +// +NA SYNCRIP_1065 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_SYNCRIP_1066 b/resources/ATtRACT_hsa/motif_SYNCRIP_1066 new file mode 100644 index 0000000..7539a5f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_SYNCRIP_1066 @@ -0,0 +1,11 @@ +// +NA SYNCRIP_1066 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_1276 b/resources/ATtRACT_hsa/motif_TARDBP_1276 new file mode 100644 index 0000000..c153493 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_1276 @@ -0,0 +1,11 @@ +// +NA TARDBP_1276 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_1277 b/resources/ATtRACT_hsa/motif_TARDBP_1277 new file mode 100644 index 0000000..d0b1dde --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_1277 @@ -0,0 +1,11 @@ +// +NA TARDBP_1277 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_1278 b/resources/ATtRACT_hsa/motif_TARDBP_1278 new file mode 100644 index 0000000..e3984dc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_1278 @@ -0,0 +1,11 @@ +// +NA TARDBP_1278 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_1279 b/resources/ATtRACT_hsa/motif_TARDBP_1279 new file mode 100644 index 0000000..69bc18a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_1279 @@ -0,0 +1,10 @@ +// +NA TARDBP_1279 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_1280 b/resources/ATtRACT_hsa/motif_TARDBP_1280 new file mode 100644 index 0000000..174e6f6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_1280 @@ -0,0 +1,16 @@ +// +NA TARDBP_1280 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_1281 b/resources/ATtRACT_hsa/motif_TARDBP_1281 new file mode 100644 index 0000000..35ec013 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_1281 @@ -0,0 +1,12 @@ +// +NA TARDBP_1281 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_1282 b/resources/ATtRACT_hsa/motif_TARDBP_1282 new file mode 100644 index 0000000..0e96dcc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_1282 @@ -0,0 +1,14 @@ +// +NA TARDBP_1282 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_1283 b/resources/ATtRACT_hsa/motif_TARDBP_1283 new file mode 100644 index 0000000..d83621f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_1283 @@ -0,0 +1,16 @@ +// +NA TARDBP_1283 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_144 b/resources/ATtRACT_hsa/motif_TARDBP_144 new file mode 100644 index 0000000..74049b2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_144 @@ -0,0 +1,16 @@ +// +NA TARDBP_144 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_178 b/resources/ATtRACT_hsa/motif_TARDBP_178 new file mode 100644 index 0000000..2ee570d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_178 @@ -0,0 +1,16 @@ +// +NA TARDBP_178 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_541 b/resources/ATtRACT_hsa/motif_TARDBP_541 new file mode 100644 index 0000000..2a7c016 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_541 @@ -0,0 +1,12 @@ +// +NA TARDBP_541 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TARDBP_M074_0.6 b/resources/ATtRACT_hsa/motif_TARDBP_M074_0.6 new file mode 100644 index 0000000..97b8c89 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TARDBP_M074_0.6 @@ -0,0 +1,12 @@ +// +NA TARDBP_M074_0.6 + A C G T +01 32.37 12.96 22.272 32.398 +02 1.028 1.028 96.917 1.028 +03 78.254 1.028 10.815 9.904 +04 96.917 1.028 1.028 1.028 +05 1.028 1.028 1.028 96.917 +06 1.028 1.028 96.917 1.028 +07 63.731 5.842 14.85 15.576 +08 31.065 13.068 33.415 22.453 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_1284 b/resources/ATtRACT_hsa/motif_TIA1_1284 new file mode 100644 index 0000000..1828a35 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_1284 @@ -0,0 +1,15 @@ +// +NA TIA1_1284 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_1285 b/resources/ATtRACT_hsa/motif_TIA1_1285 new file mode 100644 index 0000000..cf5a9e1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_1285 @@ -0,0 +1,14 @@ +// +NA TIA1_1285 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_1286 b/resources/ATtRACT_hsa/motif_TIA1_1286 new file mode 100644 index 0000000..780afc9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_1286 @@ -0,0 +1,13 @@ +// +NA TIA1_1286 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_M075_0.6 b/resources/ATtRACT_hsa/motif_TIA1_M075_0.6 new file mode 100644 index 0000000..e440dfb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_M075_0.6 @@ -0,0 +1,11 @@ +// +NA TIA1_M075_0.6 + A C G T +01 15.025 6.196 6.196 72.583 +02 1.48 1.48 1.48 95.56 +03 1.48 1.48 1.48 95.56 +04 1.48 1.48 1.48 95.56 +05 1.48 1.48 1.48 95.56 +06 1.48 20.683 20.477 57.36 +07 8.43 8.43 56.647 26.493 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_M156_0.6 b/resources/ATtRACT_hsa/motif_TIA1_M156_0.6 new file mode 100644 index 0000000..fce3a23 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_M156_0.6 @@ -0,0 +1,11 @@ +// +NA TIA1_M156_0.6 + A C G T +01 21.765 12.544 3.431 62.26 +02 1.02 1.02 1.02 96.941 +03 9.925 1.02 1.02 88.036 +04 1.02 1.02 1.02 96.941 +05 1.02 1.02 1.02 96.941 +06 1.02 1.02 10.624 87.337 +07 8.218 47.15 18.405 26.227 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_s10 b/resources/ATtRACT_hsa/motif_TIA1_s10 new file mode 100644 index 0000000..d35dc6e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_s10 @@ -0,0 +1,10 @@ +// +NA TIA1_s10 + A C G T +01 25.0 37.438 37.438 0.124 +02 0.124 0.124 0.124 99.627 +03 0.124 0.124 0.124 99.627 +04 0.124 0.124 0.124 99.627 +05 0.124 0.124 0.124 99.627 +06 25.0 37.438 37.438 0.124 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_s11 b/resources/ATtRACT_hsa/motif_TIA1_s11 new file mode 100644 index 0000000..f284332 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_s11 @@ -0,0 +1,11 @@ +// +NA TIA1_s11 + A C G T +01 0.248 49.752 49.752 0.248 +02 0.248 0.248 0.248 99.257 +03 0.248 0.248 0.248 99.257 +04 0.248 0.248 0.248 99.257 +05 0.248 0.248 0.248 99.257 +06 0.248 0.248 0.248 99.257 +07 25.0 49.752 25.0 0.248 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_s67 b/resources/ATtRACT_hsa/motif_TIA1_s67 new file mode 100644 index 0000000..736a40f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_s67 @@ -0,0 +1,14 @@ +// +NA TIA1_s67 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_s68 b/resources/ATtRACT_hsa/motif_TIA1_s68 new file mode 100644 index 0000000..d80fb04 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_s68 @@ -0,0 +1,8 @@ +// +NA TIA1_s68 + A C G T +01 49.51 49.51 0.49 0.49 +02 0.49 0.49 0.49 98.529 +03 0.49 0.49 0.49 98.529 +04 0.49 98.529 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIA1_s9 b/resources/ATtRACT_hsa/motif_TIA1_s9 new file mode 100644 index 0000000..43cf263 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIA1_s9 @@ -0,0 +1,9 @@ +// +NA TIA1_s9 + A C G T +01 25.0 37.438 37.438 0.124 +02 0.124 0.124 0.124 99.627 +03 0.124 0.124 0.124 99.627 +04 0.124 0.124 0.124 99.627 +05 37.438 37.438 25.0 0.124 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_1287 b/resources/ATtRACT_hsa/motif_TIAL1_1287 new file mode 100644 index 0000000..505be95 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_1287 @@ -0,0 +1,15 @@ +// +NA TIAL1_1287 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_1288 b/resources/ATtRACT_hsa/motif_TIAL1_1288 new file mode 100644 index 0000000..932364a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_1288 @@ -0,0 +1,15 @@ +// +NA TIAL1_1288 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_1289 b/resources/ATtRACT_hsa/motif_TIAL1_1289 new file mode 100644 index 0000000..5b97211 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_1289 @@ -0,0 +1,15 @@ +// +NA TIAL1_1289 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 0.962 97.115 +11 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_s6 b/resources/ATtRACT_hsa/motif_TIAL1_s6 new file mode 100644 index 0000000..dd161ba --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_s6 @@ -0,0 +1,9 @@ +// +NA TIAL1_s6 + A C G T +01 28.551 42.756 28.551 0.142 +02 0.142 0.142 0.142 99.574 +03 0.142 0.142 0.142 99.574 +04 0.142 0.142 0.142 99.574 +05 28.551 42.756 28.551 0.142 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_s63 b/resources/ATtRACT_hsa/motif_TIAL1_s63 new file mode 100644 index 0000000..ab7a3d9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_s63 @@ -0,0 +1,8 @@ +// +NA TIAL1_s63 + A C G T +01 98.529 0.49 0.49 0.49 +02 0.49 0.49 0.49 98.529 +03 0.49 0.49 0.49 98.529 +04 49.51 49.51 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_s64 b/resources/ATtRACT_hsa/motif_TIAL1_s64 new file mode 100644 index 0000000..2f5268f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_s64 @@ -0,0 +1,12 @@ +// +NA TIAL1_s64 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_s65 b/resources/ATtRACT_hsa/motif_TIAL1_s65 new file mode 100644 index 0000000..153131a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_s65 @@ -0,0 +1,13 @@ +// +NA TIAL1_s65 + A C G T +01 49.51 0.49 49.51 0.49 +02 0.49 0.49 0.49 98.529 +03 0.49 0.49 0.49 98.529 +04 0.49 0.49 0.49 98.529 +05 0.49 0.49 0.49 98.529 +06 0.49 0.49 0.49 98.529 +07 0.49 0.49 0.49 98.529 +08 0.49 0.49 0.49 98.529 +09 0.49 98.529 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_s66 b/resources/ATtRACT_hsa/motif_TIAL1_s66 new file mode 100644 index 0000000..6a12d57 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_s66 @@ -0,0 +1,14 @@ +// +NA TIAL1_s66 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_s7 b/resources/ATtRACT_hsa/motif_TIAL1_s7 new file mode 100644 index 0000000..323b4fb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_s7 @@ -0,0 +1,10 @@ +// +NA TIAL1_s7 + A C G T +01 42.756 42.756 14.347 0.142 +02 0.142 0.142 0.142 99.574 +03 0.142 0.142 0.142 99.574 +04 0.142 0.142 0.142 99.574 +05 0.142 0.142 0.142 99.574 +06 28.551 42.756 28.551 0.142 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TIAL1_s8 b/resources/ATtRACT_hsa/motif_TIAL1_s8 new file mode 100644 index 0000000..295aedb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TIAL1_s8 @@ -0,0 +1,11 @@ +// +NA TIAL1_s8 + A C G T +01 16.722 49.834 33.278 0.166 +02 0.166 0.166 0.166 99.503 +03 0.166 0.166 0.166 99.503 +04 0.166 0.166 0.166 99.503 +05 0.166 0.166 0.166 99.503 +06 0.166 0.166 0.166 99.503 +07 33.278 33.278 33.278 0.166 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2A_1075 b/resources/ATtRACT_hsa/motif_TRA2A_1075 new file mode 100644 index 0000000..b3acc7f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2A_1075 @@ -0,0 +1,14 @@ +// +NA TRA2A_1075 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2A_1328 b/resources/ATtRACT_hsa/motif_TRA2A_1328 new file mode 100644 index 0000000..ed3dd81 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2A_1328 @@ -0,0 +1,16 @@ +// +NA TRA2A_1328 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 97.115 0.962 0.962 0.962 +11 97.115 0.962 0.962 0.962 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2A_s76 b/resources/ATtRACT_hsa/motif_TRA2A_s76 new file mode 100644 index 0000000..e769e7b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2A_s76 @@ -0,0 +1,12 @@ +// +NA TRA2A_s76 + A C G T +01 98.529 0.49 0.49 0.49 +02 98.529 0.49 0.49 0.49 +03 0.49 0.49 98.529 0.49 +04 98.529 0.49 0.49 0.49 +05 98.529 0.49 0.49 0.49 +06 0.49 0.49 98.529 0.49 +07 98.529 0.49 0.49 0.49 +08 98.529 0.49 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2A_s77 b/resources/ATtRACT_hsa/motif_TRA2A_s77 new file mode 100644 index 0000000..05dde60 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2A_s77 @@ -0,0 +1,15 @@ +// +NA TRA2A_s77 + A C G T +01 98.529 0.49 0.49 0.49 +02 98.529 0.49 0.49 0.49 +03 0.49 0.49 98.529 0.49 +04 98.529 0.49 0.49 0.49 +05 98.529 0.49 0.49 0.49 +06 0.49 0.49 98.529 0.49 +07 98.529 0.49 0.49 0.49 +08 98.529 0.49 0.49 0.49 +09 0.49 0.49 98.529 0.49 +10 98.529 0.49 0.49 0.49 +11 98.529 0.49 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2A_s78 b/resources/ATtRACT_hsa/motif_TRA2A_s78 new file mode 100644 index 0000000..d39d31b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2A_s78 @@ -0,0 +1,9 @@ +// +NA TRA2A_s78 + A C G T +01 98.529 0.49 0.49 0.49 +02 98.529 0.49 0.49 0.49 +03 0.49 0.49 98.529 0.49 +04 98.529 0.49 0.49 0.49 +05 98.529 0.49 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1076 b/resources/ATtRACT_hsa/motif_TRA2B_1076 new file mode 100644 index 0000000..dc535c0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1076 @@ -0,0 +1,13 @@ +// +NA TRA2B_1076 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1077 b/resources/ATtRACT_hsa/motif_TRA2B_1077 new file mode 100644 index 0000000..4b96afa --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1077 @@ -0,0 +1,13 @@ +// +NA TRA2B_1077 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1078 b/resources/ATtRACT_hsa/motif_TRA2B_1078 new file mode 100644 index 0000000..fb75de3 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1078 @@ -0,0 +1,10 @@ +// +NA TRA2B_1078 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1079 b/resources/ATtRACT_hsa/motif_TRA2B_1079 new file mode 100644 index 0000000..2bcff40 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1079 @@ -0,0 +1,14 @@ +// +NA TRA2B_1079 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1081 b/resources/ATtRACT_hsa/motif_TRA2B_1081 new file mode 100644 index 0000000..2dcc966 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1081 @@ -0,0 +1,15 @@ +// +NA TRA2B_1081 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +11 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1082 b/resources/ATtRACT_hsa/motif_TRA2B_1082 new file mode 100644 index 0000000..d951b90 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1082 @@ -0,0 +1,12 @@ +// +NA TRA2B_1082 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1083 b/resources/ATtRACT_hsa/motif_TRA2B_1083 new file mode 100644 index 0000000..de618bb --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1083 @@ -0,0 +1,12 @@ +// +NA TRA2B_1083 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1084 b/resources/ATtRACT_hsa/motif_TRA2B_1084 new file mode 100644 index 0000000..d58fa79 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1084 @@ -0,0 +1,10 @@ +// +NA TRA2B_1084 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1085 b/resources/ATtRACT_hsa/motif_TRA2B_1085 new file mode 100644 index 0000000..4306f7a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1085 @@ -0,0 +1,9 @@ +// +NA TRA2B_1085 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1086 b/resources/ATtRACT_hsa/motif_TRA2B_1086 new file mode 100644 index 0000000..ce9fcdd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1086 @@ -0,0 +1,10 @@ +// +NA TRA2B_1086 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1087 b/resources/ATtRACT_hsa/motif_TRA2B_1087 new file mode 100644 index 0000000..1ca4c78 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1087 @@ -0,0 +1,10 @@ +// +NA TRA2B_1087 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1090 b/resources/ATtRACT_hsa/motif_TRA2B_1090 new file mode 100644 index 0000000..81c3afa --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1090 @@ -0,0 +1,10 @@ +// +NA TRA2B_1090 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1091 b/resources/ATtRACT_hsa/motif_TRA2B_1091 new file mode 100644 index 0000000..aa8c1a1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1091 @@ -0,0 +1,10 @@ +// +NA TRA2B_1091 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1309 b/resources/ATtRACT_hsa/motif_TRA2B_1309 new file mode 100644 index 0000000..cd1fe21 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1309 @@ -0,0 +1,12 @@ +// +NA TRA2B_1309 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1313 b/resources/ATtRACT_hsa/motif_TRA2B_1313 new file mode 100644 index 0000000..c9ea382 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1313 @@ -0,0 +1,15 @@ +// +NA TRA2B_1313 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +10 97.115 0.962 0.962 0.962 +11 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1315 b/resources/ATtRACT_hsa/motif_TRA2B_1315 new file mode 100644 index 0000000..2985f75 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1315 @@ -0,0 +1,13 @@ +// +NA TRA2B_1315 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 97.115 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_1375 b/resources/ATtRACT_hsa/motif_TRA2B_1375 new file mode 100644 index 0000000..970cb7b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_1375 @@ -0,0 +1,12 @@ +// +NA TRA2B_1375 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_368 b/resources/ATtRACT_hsa/motif_TRA2B_368 new file mode 100644 index 0000000..23a9ff0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_368 @@ -0,0 +1,8 @@ +// +NA TRA2B_368 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TRA2B_530 b/resources/ATtRACT_hsa/motif_TRA2B_530 new file mode 100644 index 0000000..9aab0db --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TRA2B_530 @@ -0,0 +1,9 @@ +// +NA TRA2B_530 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_TUT1_M073_0.6 b/resources/ATtRACT_hsa/motif_TUT1_M073_0.6 new file mode 100644 index 0000000..7f460e0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_TUT1_M073_0.6 @@ -0,0 +1,11 @@ +// +NA TUT1_M073_0.6 + A C G T +01 19.942 57.58 11.239 11.239 +02 21.306 11.239 56.217 11.239 +03 86.662 4.446 4.446 4.446 +04 2.173 2.173 2.173 93.481 +05 93.481 2.173 2.173 2.173 +06 6.764 70.776 6.764 15.696 +07 9.034 9.034 9.034 72.897 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_U2AF2_461 b/resources/ATtRACT_hsa/motif_U2AF2_461 new file mode 100644 index 0000000..e9ef279 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_U2AF2_461 @@ -0,0 +1,9 @@ +// +NA U2AF2_461 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_U2AF2_465 b/resources/ATtRACT_hsa/motif_U2AF2_465 new file mode 100644 index 0000000..c9f706b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_U2AF2_465 @@ -0,0 +1,11 @@ +// +NA U2AF2_465 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_U2AF2_M077_0.6 b/resources/ATtRACT_hsa/motif_U2AF2_M077_0.6 new file mode 100644 index 0000000..6a8ba89 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_U2AF2_M077_0.6 @@ -0,0 +1,11 @@ +// +NA U2AF2_M077_0.6 + A C G T +01 13.465 13.036 5.341 68.158 +02 0.576 0.576 0.576 98.272 +03 0.576 0.576 0.576 98.272 +04 0.576 0.576 0.576 98.272 +05 0.576 9.804 0.576 89.044 +06 0.576 32.779 0.576 66.069 +07 5.297 71.75 5.297 17.656 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_XPO5_469 b/resources/ATtRACT_hsa/motif_XPO5_469 new file mode 100644 index 0000000..dd75f62 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_XPO5_469 @@ -0,0 +1,8 @@ +// +NA XPO5_469 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_XPO5_578 b/resources/ATtRACT_hsa/motif_XPO5_578 new file mode 100644 index 0000000..5bf1a4b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_XPO5_578 @@ -0,0 +1,8 @@ +// +NA XPO5_578 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_124 b/resources/ATtRACT_hsa/motif_YBX1_124 new file mode 100644 index 0000000..75a87bf --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_124 @@ -0,0 +1,12 @@ +// +NA YBX1_124 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1290 b/resources/ATtRACT_hsa/motif_YBX1_1290 new file mode 100644 index 0000000..46b7a6f --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1290 @@ -0,0 +1,16 @@ +// +NA YBX1_1290 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 97.115 0.962 0.962 +10 0.962 97.115 0.962 0.962 +11 97.115 0.962 0.962 0.962 +12 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1291 b/resources/ATtRACT_hsa/motif_YBX1_1291 new file mode 100644 index 0000000..714913b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1291 @@ -0,0 +1,13 @@ +// +NA YBX1_1291 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1292 b/resources/ATtRACT_hsa/motif_YBX1_1292 new file mode 100644 index 0000000..ed4c4cd --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1292 @@ -0,0 +1,9 @@ +// +NA YBX1_1292 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1293 b/resources/ATtRACT_hsa/motif_YBX1_1293 new file mode 100644 index 0000000..168971e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1293 @@ -0,0 +1,9 @@ +// +NA YBX1_1293 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1294 b/resources/ATtRACT_hsa/motif_YBX1_1294 new file mode 100644 index 0000000..c28c0ad --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1294 @@ -0,0 +1,8 @@ +// +NA YBX1_1294 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1295 b/resources/ATtRACT_hsa/motif_YBX1_1295 new file mode 100644 index 0000000..5ba16da --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1295 @@ -0,0 +1,10 @@ +// +NA YBX1_1295 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1296 b/resources/ATtRACT_hsa/motif_YBX1_1296 new file mode 100644 index 0000000..bbe741e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1296 @@ -0,0 +1,10 @@ +// +NA YBX1_1296 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1297 b/resources/ATtRACT_hsa/motif_YBX1_1297 new file mode 100644 index 0000000..9105560 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1297 @@ -0,0 +1,10 @@ +// +NA YBX1_1297 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1298 b/resources/ATtRACT_hsa/motif_YBX1_1298 new file mode 100644 index 0000000..7a32a69 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1298 @@ -0,0 +1,8 @@ +// +NA YBX1_1298 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1299 b/resources/ATtRACT_hsa/motif_YBX1_1299 new file mode 100644 index 0000000..7916236 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1299 @@ -0,0 +1,11 @@ +// +NA YBX1_1299 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1321 b/resources/ATtRACT_hsa/motif_YBX1_1321 new file mode 100644 index 0000000..31164a4 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1321 @@ -0,0 +1,14 @@ +// +NA YBX1_1321 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 97.115 0.962 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_1339 b/resources/ATtRACT_hsa/motif_YBX1_1339 new file mode 100644 index 0000000..3d98851 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_1339 @@ -0,0 +1,13 @@ +// +NA YBX1_1339 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 97.115 0.962 0.962 +08 97.115 0.962 0.962 0.962 +09 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_M081_0.6 b/resources/ATtRACT_hsa/motif_YBX1_M081_0.6 new file mode 100644 index 0000000..8dd8e57 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_M081_0.6 @@ -0,0 +1,11 @@ +// +NA YBX1_M081_0.6 + A C G T +01 97.986 0.671 0.671 0.671 +02 82.991 15.666 0.671 0.671 +03 0.671 97.986 0.671 0.671 +04 97.986 0.671 0.671 0.671 +05 7.726 13.326 0.671 78.276 +06 0.671 97.986 0.671 0.671 +07 49.246 15.398 17.161 18.195 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_M111_0.6 b/resources/ATtRACT_hsa/motif_YBX1_M111_0.6 new file mode 100644 index 0000000..67f17b6 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_M111_0.6 @@ -0,0 +1,11 @@ +// +NA YBX1_M111_0.6 + A C G T +01 90.635 3.122 3.122 3.122 +02 75.342 23.133 0.763 0.763 +03 0.763 97.711 0.763 0.763 +04 97.711 0.763 0.763 0.763 +05 0.763 19.234 0.763 79.24 +06 0.763 97.711 0.763 0.763 +07 54.603 5.817 23.055 16.525 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX1_s54 b/resources/ATtRACT_hsa/motif_YBX1_s54 new file mode 100644 index 0000000..8db943a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX1_s54 @@ -0,0 +1,8 @@ +// +NA YBX1_s54 + A C G T +01 0.49 98.529 0.49 0.49 +02 98.529 0.49 0.49 0.49 +03 0.49 49.51 0.49 49.51 +04 0.49 98.529 0.49 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YBX2_M082_0.6 b/resources/ATtRACT_hsa/motif_YBX2_M082_0.6 new file mode 100644 index 0000000..6fecb13 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YBX2_M082_0.6 @@ -0,0 +1,11 @@ +// +NA YBX2_M082_0.6 + A C G T +01 88.109 0.967 9.958 0.967 +02 88.109 0.967 9.958 0.967 +03 0.967 88.109 9.958 0.967 +04 97.1 0.967 0.967 0.967 +05 49.757 0.967 9.958 39.319 +06 0.967 97.1 0.967 0.967 +07 32.897 10.55 27.154 29.399 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YTHDC1_50 b/resources/ATtRACT_hsa/motif_YTHDC1_50 new file mode 100644 index 0000000..0a28eb1 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YTHDC1_50 @@ -0,0 +1,10 @@ +// +NA YTHDC1_50 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_YTHDC1_M354_0.6 b/resources/ATtRACT_hsa/motif_YTHDC1_M354_0.6 new file mode 100644 index 0000000..c2fa7b9 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_YTHDC1_M354_0.6 @@ -0,0 +1,10 @@ +// +NA YTHDC1_M354_0.6 + A C G T +01 1.0 13.889 46.222 38.889 +02 47.222 36.111 13.889 2.778 +03 41.667 19.444 27.778 11.111 +04 1.0 1.0 5.556 92.444 +05 37.889 22.222 37.889 1.0 +06 5.556 85.111 8.333 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZC3H10_M083_0.6 b/resources/ATtRACT_hsa/motif_ZC3H10_M083_0.6 new file mode 100644 index 0000000..da198f8 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZC3H10_M083_0.6 @@ -0,0 +1,11 @@ +// +NA ZC3H10_M083_0.6 + A C G T +01 9.921 27.347 52.81 9.921 +02 13.567 57.274 23.793 5.366 +03 82.128 11.872 3.0 3.0 +04 0.587 0.587 98.238 0.587 +05 0.587 98.238 0.587 0.587 +06 3.067 3.067 90.799 3.067 +07 21.688 56.433 10.939 10.939 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZCRB1_M085_0.6 b/resources/ATtRACT_hsa/motif_ZCRB1_M085_0.6 new file mode 100644 index 0000000..ff8bbc0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZCRB1_M085_0.6 @@ -0,0 +1,12 @@ +// +NA ZCRB1_M085_0.6 + A C G T +01 12.363 12.363 62.912 12.363 +02 63.622 3.2 21.391 11.787 +03 49.298 30.209 0.804 19.689 +04 0.804 0.804 0.804 97.589 +05 0.804 0.804 0.804 97.589 +06 97.589 0.804 0.804 0.804 +07 97.589 0.804 0.804 0.804 +08 13.49 13.49 41.419 31.601 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36L2_15 b/resources/ATtRACT_hsa/motif_ZFP36L2_15 new file mode 100644 index 0000000..c744087 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36L2_15 @@ -0,0 +1,13 @@ +// +NA ZFP36L2_15 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36L2_428 b/resources/ATtRACT_hsa/motif_ZFP36L2_428 new file mode 100644 index 0000000..de75802 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36L2_428 @@ -0,0 +1,13 @@ +// +NA ZFP36L2_428 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36_109 b/resources/ATtRACT_hsa/motif_ZFP36_109 new file mode 100644 index 0000000..16a6d6e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36_109 @@ -0,0 +1,13 @@ +// +NA ZFP36_109 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36_128 b/resources/ATtRACT_hsa/motif_ZFP36_128 new file mode 100644 index 0000000..628f478 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36_128 @@ -0,0 +1,9 @@ +// +NA ZFP36_128 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36_138 b/resources/ATtRACT_hsa/motif_ZFP36_138 new file mode 100644 index 0000000..6dd659d --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36_138 @@ -0,0 +1,9 @@ +// +NA ZFP36_138 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36_155 b/resources/ATtRACT_hsa/motif_ZFP36_155 new file mode 100644 index 0000000..725126b --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36_155 @@ -0,0 +1,10 @@ +// +NA ZFP36_155 + A C G T +01 33.324 33.324 0.028 33.324 +02 0.028 99.917 0.028 0.028 +03 0.028 49.972 0.028 49.972 +04 0.028 0.028 0.028 99.917 +05 0.028 33.324 33.324 33.324 +06 0.028 49.972 0.028 49.972 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36_38 b/resources/ATtRACT_hsa/motif_ZFP36_38 new file mode 100644 index 0000000..8a8b008 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36_38 @@ -0,0 +1,9 @@ +// +NA ZFP36_38 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36_49 b/resources/ATtRACT_hsa/motif_ZFP36_49 new file mode 100644 index 0000000..6e2efff --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36_49 @@ -0,0 +1,10 @@ +// +NA ZFP36_49 + A C G T +01 0.49 0.49 0.49 98.529 +02 0.49 0.49 0.49 98.529 +03 0.49 0.49 98.529 0.49 +04 0.49 0.49 0.49 98.529 +05 0.49 0.49 98.529 0.49 +06 0.49 49.51 49.51 0.49 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36_M269_0.6 b/resources/ATtRACT_hsa/motif_ZFP36_M269_0.6 new file mode 100644 index 0000000..a7064f0 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36_M269_0.6 @@ -0,0 +1,15 @@ +// +NA ZFP36_M269_0.6 + A C G T +01 97.0 1.0 1.0 1.0 +02 97.0 1.0 1.0 1.0 +03 39.0 20.0 1.0 39.0 +04 97.0 1.0 1.0 1.0 +05 97.0 1.0 1.0 1.0 +06 58.0 1.0 40.0 1.0 +07 1.0 20.0 39.0 39.0 +08 97.0 1.0 1.0 1.0 +09 97.0 1.0 1.0 1.0 +10 97.0 1.0 1.0 1.0 +11 1.0 1.0 97.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZFP36_M350_0.6 b/resources/ATtRACT_hsa/motif_ZFP36_M350_0.6 new file mode 100644 index 0000000..c17b8dc --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZFP36_M350_0.6 @@ -0,0 +1,13 @@ +// +NA ZFP36_M350_0.6 + A C G T +01 18.75 6.25 1.0 74.0 +02 6.25 1.0 6.25 86.5 +03 91.75 1.0 6.25 1.0 +04 1.0 1.0 1.0 97.0 +05 1.0 1.0 1.0 97.0 +06 1.0 1.0 1.0 97.0 +07 86.5 6.25 6.25 1.0 +08 37.5 1.0 1.0 60.5 +09 6.25 12.5 25.0 56.25 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZNF346_388 b/resources/ATtRACT_hsa/motif_ZNF346_388 new file mode 100644 index 0000000..33c6e8c --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZNF346_388 @@ -0,0 +1,9 @@ +// +NA ZNF346_388 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZNF346_481 b/resources/ATtRACT_hsa/motif_ZNF346_481 new file mode 100644 index 0000000..9fc38ac --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZNF346_481 @@ -0,0 +1,9 @@ +// +NA ZNF346_481 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZNF638_M155_0.6 b/resources/ATtRACT_hsa/motif_ZNF638_M155_0.6 new file mode 100644 index 0000000..1154ab7 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZNF638_M155_0.6 @@ -0,0 +1,11 @@ +// +NA ZNF638_M155_0.6 + A C G T +01 9.077 18.015 17.818 55.09 +02 1.992 1.992 85.457 10.558 +03 1.992 1.992 1.992 94.023 +04 1.992 1.992 12.943 83.072 +05 1.992 57.249 38.766 1.992 +06 1.992 1.992 65.633 30.382 +07 6.607 6.607 15.223 71.564 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZRANB2_1300 b/resources/ATtRACT_hsa/motif_ZRANB2_1300 new file mode 100644 index 0000000..7e50a1e --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZRANB2_1300 @@ -0,0 +1,10 @@ +// +NA ZRANB2_1300 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZRANB2_1301 b/resources/ATtRACT_hsa/motif_ZRANB2_1301 new file mode 100644 index 0000000..7527167 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZRANB2_1301 @@ -0,0 +1,10 @@ +// +NA ZRANB2_1301 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZRANB2_1302 b/resources/ATtRACT_hsa/motif_ZRANB2_1302 new file mode 100644 index 0000000..14e3d56 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZRANB2_1302 @@ -0,0 +1,13 @@ +// +NA ZRANB2_1302 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZRANB2_1303 b/resources/ATtRACT_hsa/motif_ZRANB2_1303 new file mode 100644 index 0000000..3faaf5a --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZRANB2_1303 @@ -0,0 +1,13 @@ +// +NA ZRANB2_1303 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZRANB2_s20 b/resources/ATtRACT_hsa/motif_ZRANB2_s20 new file mode 100644 index 0000000..aba4bf2 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZRANB2_s20 @@ -0,0 +1,10 @@ +// +NA ZRANB2_s20 + A C G T +01 0.198 59.722 39.881 0.198 +02 0.198 0.198 99.405 0.198 +03 0.198 0.198 99.405 0.198 +04 0.198 0.198 0.198 99.405 +05 59.722 20.04 20.04 0.198 +06 39.881 0.198 20.04 39.881 +// \ No newline at end of file diff --git a/resources/ATtRACT_hsa/motif_ZRANB2_s21 b/resources/ATtRACT_hsa/motif_ZRANB2_s21 new file mode 100644 index 0000000..cc33198 --- /dev/null +++ b/resources/ATtRACT_hsa/motif_ZRANB2_s21 @@ -0,0 +1,10 @@ +// +NA ZRANB2_s21 + A C G T +01 69.821 10.06 10.06 10.06 +02 10.06 0.1 89.741 0.1 +03 0.1 0.1 99.701 0.1 +04 0.1 0.1 10.06 89.741 +05 59.861 10.06 0.1 29.98 +06 39.94 10.06 10.06 39.94 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_3IVK_519 b/resources/ATtRACT_mmu/motif_3IVK_519 new file mode 100644 index 0000000..8c0e650 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_3IVK_519 @@ -0,0 +1,10 @@ +// +NA 3IVK_519 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_3IVK_574 b/resources/ATtRACT_mmu/motif_3IVK_574 new file mode 100644 index 0000000..e6d1ca2 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_3IVK_574 @@ -0,0 +1,8 @@ +// +NA 3IVK_574 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_4KZD_464 b/resources/ATtRACT_mmu/motif_4KZD_464 new file mode 100644 index 0000000..6aac3de --- /dev/null +++ b/resources/ATtRACT_mmu/motif_4KZD_464 @@ -0,0 +1,9 @@ +// +NA 4KZD_464 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_4KZE_437 b/resources/ATtRACT_mmu/motif_4KZE_437 new file mode 100644 index 0000000..d5b5459 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_4KZE_437 @@ -0,0 +1,9 @@ +// +NA 4KZE_437 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_4Q9Q_423 b/resources/ATtRACT_mmu/motif_4Q9Q_423 new file mode 100644 index 0000000..4162770 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_4Q9Q_423 @@ -0,0 +1,9 @@ +// +NA 4Q9Q_423 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_4Q9R_433 b/resources/ATtRACT_mmu/motif_4Q9R_433 new file mode 100644 index 0000000..7c93807 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_4Q9R_433 @@ -0,0 +1,10 @@ +// +NA 4Q9R_433 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_ADARB1_401 b/resources/ATtRACT_mmu/motif_ADARB1_401 new file mode 100644 index 0000000..2e68ebb --- /dev/null +++ b/resources/ATtRACT_mmu/motif_ADARB1_401 @@ -0,0 +1,8 @@ +// +NA ADARB1_401 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_ADARB1_527 b/resources/ATtRACT_mmu/motif_ADARB1_527 new file mode 100644 index 0000000..b9258e9 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_ADARB1_527 @@ -0,0 +1,8 @@ +// +NA ADARB1_527 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_DAZL_348 b/resources/ATtRACT_mmu/motif_DAZL_348 new file mode 100644 index 0000000..96023e9 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_DAZL_348 @@ -0,0 +1,9 @@ +// +NA DAZL_348 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_DAZL_357 b/resources/ATtRACT_mmu/motif_DAZL_357 new file mode 100644 index 0000000..39af137 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_DAZL_357 @@ -0,0 +1,8 @@ +// +NA DAZL_357 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_DAZL_558 b/resources/ATtRACT_mmu/motif_DAZL_558 new file mode 100644 index 0000000..1252304 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_DAZL_558 @@ -0,0 +1,9 @@ +// +NA DAZL_558 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_ELAVL3_567 b/resources/ATtRACT_mmu/motif_ELAVL3_567 new file mode 100644 index 0000000..c6ff269 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_ELAVL3_567 @@ -0,0 +1,13 @@ +// +NA ELAVL3_567 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_HNRNPA1_1305 b/resources/ATtRACT_mmu/motif_HNRNPA1_1305 new file mode 100644 index 0000000..35a830f --- /dev/null +++ b/resources/ATtRACT_mmu/motif_HNRNPA1_1305 @@ -0,0 +1,10 @@ +// +NA HNRNPA1_1305 + A C G T +01 0.962 0.962 0.962 97.115 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_HNRNPF_1325 b/resources/ATtRACT_mmu/motif_HNRNPF_1325 new file mode 100644 index 0000000..6b31094 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_HNRNPF_1325 @@ -0,0 +1,12 @@ +// +NA HNRNPF_1325 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_HNRNPH1_1320 b/resources/ATtRACT_mmu/motif_HNRNPH1_1320 new file mode 100644 index 0000000..27ddc36 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_HNRNPH1_1320 @@ -0,0 +1,12 @@ +// +NA HNRNPH1_1320 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_KHDRBS1_M060_0.6 b/resources/ATtRACT_mmu/motif_KHDRBS1_M060_0.6 new file mode 100644 index 0000000..31744ef --- /dev/null +++ b/resources/ATtRACT_mmu/motif_KHDRBS1_M060_0.6 @@ -0,0 +1,11 @@ +// +NA KHDRBS1_M060_0.6 + A C G T +01 1.283 1.283 1.283 96.151 +02 96.151 1.283 1.283 1.283 +03 96.151 1.283 1.283 1.283 +04 87.053 1.283 1.283 10.381 +05 89.145 3.618 3.618 3.618 +06 14.675 15.168 64.154 6.002 +07 19.736 21.145 48.192 10.926 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_KHSRP_1322 b/resources/ATtRACT_mmu/motif_KHSRP_1322 new file mode 100644 index 0000000..2a89dae --- /dev/null +++ b/resources/ATtRACT_mmu/motif_KHSRP_1322 @@ -0,0 +1,10 @@ +// +NA KHSRP_1322 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_LIN28A_369 b/resources/ATtRACT_mmu/motif_LIN28A_369 new file mode 100644 index 0000000..94b9d53 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_LIN28A_369 @@ -0,0 +1,9 @@ +// +NA LIN28A_369 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_LIN28A_395 b/resources/ATtRACT_mmu/motif_LIN28A_395 new file mode 100644 index 0000000..fae1084 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_LIN28A_395 @@ -0,0 +1,13 @@ +// +NA LIN28A_395 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_LIN28A_444 b/resources/ATtRACT_mmu/motif_LIN28A_444 new file mode 100644 index 0000000..8f2e302 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_LIN28A_444 @@ -0,0 +1,12 @@ +// +NA LIN28A_444 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_LIN28A_513 b/resources/ATtRACT_mmu/motif_LIN28A_513 new file mode 100644 index 0000000..bd11bf8 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_LIN28A_513 @@ -0,0 +1,14 @@ +// +NA LIN28A_513 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +10 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_LIN28A_556 b/resources/ATtRACT_mmu/motif_LIN28A_556 new file mode 100644 index 0000000..a7e1cc4 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_LIN28A_556 @@ -0,0 +1,8 @@ +// +NA LIN28A_556 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_LIN28A_576 b/resources/ATtRACT_mmu/motif_LIN28A_576 new file mode 100644 index 0000000..4ce6c03 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_LIN28A_576 @@ -0,0 +1,14 @@ +// +NA LIN28A_576 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 0.962 97.115 +08 97.115 0.962 0.962 0.962 +09 0.962 97.115 0.962 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_MSI1_328 b/resources/ATtRACT_mmu/motif_MSI1_328 new file mode 100644 index 0000000..4187083 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_MSI1_328 @@ -0,0 +1,9 @@ +// +NA MSI1_328 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 0.962 97.115 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_NFKB1_453 b/resources/ATtRACT_mmu/motif_NFKB1_453 new file mode 100644 index 0000000..b9ee7b5 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_NFKB1_453 @@ -0,0 +1,8 @@ +// +NA NFKB1_453 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_NFKB1_474 b/resources/ATtRACT_mmu/motif_NFKB1_474 new file mode 100644 index 0000000..45d28ca --- /dev/null +++ b/resources/ATtRACT_mmu/motif_NFKB1_474 @@ -0,0 +1,8 @@ +// +NA NFKB1_474 + A C G T +01 0.962 0.962 97.115 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_NFKB1_549 b/resources/ATtRACT_mmu/motif_NFKB1_549 new file mode 100644 index 0000000..7dd6dc1 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_NFKB1_549 @@ -0,0 +1,8 @@ +// +NA NFKB1_549 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_NOVA2_179 b/resources/ATtRACT_mmu/motif_NOVA2_179 new file mode 100644 index 0000000..a56a57f --- /dev/null +++ b/resources/ATtRACT_mmu/motif_NOVA2_179 @@ -0,0 +1,8 @@ +// +NA NOVA2_179 + A C G T +01 0.248 49.752 0.248 49.752 +02 0.248 99.257 0.248 0.248 +03 99.257 0.248 0.248 0.248 +04 0.248 49.752 0.248 49.752 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PCBP1_M207_0.6 b/resources/ATtRACT_mmu/motif_PCBP1_M207_0.6 new file mode 100644 index 0000000..534d643 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PCBP1_M207_0.6 @@ -0,0 +1,12 @@ +// +NA PCBP1_M207_0.6 + A C G T +01 12.993 61.022 12.993 12.993 +02 16.217 71.525 6.129 6.129 +03 9.854 19.832 1.512 68.802 +04 9.854 1.512 1.512 87.122 +05 12.615 3.832 3.832 79.721 +06 6.18 81.459 6.18 6.18 +07 6.18 81.459 6.18 6.18 +08 13.53 50.777 13.53 22.163 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PCBP3_M188_0.6 b/resources/ATtRACT_mmu/motif_PCBP3_M188_0.6 new file mode 100644 index 0000000..b4a81d2 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PCBP3_M188_0.6 @@ -0,0 +1,12 @@ +// +NA PCBP3_M188_0.6 + A C G T +01 22.625 41.708 13.263 22.405 +02 12.904 13.223 3.886 69.987 +03 20.592 1.508 1.508 76.392 +04 20.592 1.508 1.508 76.392 +05 1.508 67.609 1.508 29.375 +06 1.508 95.476 1.508 1.508 +07 3.897 88.31 3.897 3.897 +08 13.245 13.245 13.245 60.264 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PIWIL1_415 b/resources/ATtRACT_mmu/motif_PIWIL1_415 new file mode 100644 index 0000000..dcc2472 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PIWIL1_415 @@ -0,0 +1,10 @@ +// +NA PIWIL1_415 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PTBP1_1359 b/resources/ATtRACT_mmu/motif_PTBP1_1359 new file mode 100644 index 0000000..f59a8b7 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PTBP1_1359 @@ -0,0 +1,10 @@ +// +NA PTBP1_1359 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PTBP1_1372 b/resources/ATtRACT_mmu/motif_PTBP1_1372 new file mode 100644 index 0000000..9a68382 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PTBP1_1372 @@ -0,0 +1,9 @@ +// +NA PTBP1_1372 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PTBP1_1379 b/resources/ATtRACT_mmu/motif_PTBP1_1379 new file mode 100644 index 0000000..74dc306 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PTBP1_1379 @@ -0,0 +1,14 @@ +// +NA PTBP1_1379 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PTBP1_1382 b/resources/ATtRACT_mmu/motif_PTBP1_1382 new file mode 100644 index 0000000..2003fb5 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PTBP1_1382 @@ -0,0 +1,8 @@ +// +NA PTBP1_1382 + A C G T +01 0.9615384615379999 0.9615384615379999 0.9615384615379999 97.1153846154 +02 0.9615384615379999 0.9615384615379999 0.9615384615379999 97.1153846154 +03 97.1153846154 0.9615384615379999 0.9615384615379999 0.9615384615379999 +04 0.9615384615379999 0.9615384615379999 97.1153846154 0.9615384615379999 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PTBP2_1317 b/resources/ATtRACT_mmu/motif_PTBP2_1317 new file mode 100644 index 0000000..0be2eec --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PTBP2_1317 @@ -0,0 +1,9 @@ +// +NA PTBP2_1317 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PTBP2_1370 b/resources/ATtRACT_mmu/motif_PTBP2_1370 new file mode 100644 index 0000000..cb5d80f --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PTBP2_1370 @@ -0,0 +1,10 @@ +// +NA PTBP2_1370 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PUM2_115 b/resources/ATtRACT_mmu/motif_PUM2_115 new file mode 100644 index 0000000..293df6b --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PUM2_115 @@ -0,0 +1,16 @@ +// +NA PUM2_115 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 0.962 97.115 +07 97.115 0.962 0.962 0.962 +08 0.962 97.115 0.962 0.962 +09 97.115 0.962 0.962 0.962 +10 0.962 0.962 0.962 97.115 +11 97.115 0.962 0.962 0.962 +12 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PUM2_329_11780640.pfm b/resources/ATtRACT_mmu/motif_PUM2_329_11780640.pfm new file mode 100644 index 0000000..d6da785 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PUM2_329_11780640.pfm @@ -0,0 +1,8 @@ +// +NA PUM2_329_11780640.pfm + A C G T +01 1.0 1.0 1.0 97.0 +02 1.0 1.0 97.0 1.0 +03 1.0 1.0 1.0 97.0 +04 97.0 1.0 1.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PUM2_66 b/resources/ATtRACT_mmu/motif_PUM2_66 new file mode 100644 index 0000000..71db546 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PUM2_66 @@ -0,0 +1,15 @@ +// +NA PUM2_66 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +06 97.115 0.962 0.962 0.962 +07 0.962 0.962 97.115 0.962 +08 97.115 0.962 0.962 0.962 +09 0.962 0.962 0.962 97.115 +10 97.115 0.962 0.962 0.962 +11 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_PUM2_M286_0.6 b/resources/ATtRACT_mmu/motif_PUM2_M286_0.6 new file mode 100644 index 0000000..7134a09 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_PUM2_M286_0.6 @@ -0,0 +1,8 @@ +// +NA PUM2_M286_0.6 + A C G T +01 1.0 1.0 1.0 97.0 +02 1.0 1.0 97.0 1.0 +03 1.0 1.0 1.0 97.0 +04 97.0 1.0 1.0 1.0 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_RAVER1_152 b/resources/ATtRACT_mmu/motif_RAVER1_152 new file mode 100644 index 0000000..3bb5bd5 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_RAVER1_152 @@ -0,0 +1,16 @@ +// +NA RAVER1_152 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 97.115 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 97.115 0.962 +06 0.962 97.115 0.962 0.962 +07 97.115 0.962 0.962 0.962 +08 0.962 0.962 97.115 0.962 +09 0.962 0.962 0.962 97.115 +10 0.962 97.115 0.962 0.962 +11 0.962 0.962 0.962 97.115 +12 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_RBM38_M049_0.6 b/resources/ATtRACT_mmu/motif_RBM38_M049_0.6 new file mode 100644 index 0000000..9502acb --- /dev/null +++ b/resources/ATtRACT_mmu/motif_RBM38_M049_0.6 @@ -0,0 +1,11 @@ +// +NA RBM38_M049_0.6 + A C G T +01 7.829 7.829 57.532 26.809 +02 0.573 0.573 28.123 70.73 +03 0.573 0.573 98.28 0.573 +04 0.573 0.573 8.968 89.885 +05 0.573 0.573 98.28 0.573 +06 0.573 10.64 17.001 71.785 +07 5.248 5.248 66.852 22.651 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_RBM45_M209_0.6 b/resources/ATtRACT_mmu/motif_RBM45_M209_0.6 new file mode 100644 index 0000000..99dffb8 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_RBM45_M209_0.6 @@ -0,0 +1,11 @@ +// +NA RBM45_M209_0.6 + A C G T +01 8.032 8.032 75.905 8.032 +02 82.94 5.687 5.687 5.687 +03 12.25 72.055 12.375 3.319 +04 0.912 0.912 87.683 10.493 +05 76.75 0.912 21.426 0.912 +06 23.953 69.372 3.338 3.338 +07 45.131 28.509 18.262 8.098 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_RC3H1_350 b/resources/ATtRACT_mmu/motif_RC3H1_350 new file mode 100644 index 0000000..3007382 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_RC3H1_350 @@ -0,0 +1,13 @@ +// +NA RC3H1_350 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 0.962 0.962 97.115 +05 0.962 97.115 0.962 0.962 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 97.115 0.962 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_RC3H1_528 b/resources/ATtRACT_mmu/motif_RC3H1_528 new file mode 100644 index 0000000..f9954b1 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_RC3H1_528 @@ -0,0 +1,12 @@ +// +NA RC3H1_528 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 0.962 97.115 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_SRSF1_1324 b/resources/ATtRACT_mmu/motif_SRSF1_1324 new file mode 100644 index 0000000..b7dc28c --- /dev/null +++ b/resources/ATtRACT_mmu/motif_SRSF1_1324 @@ -0,0 +1,11 @@ +// +NA SRSF1_1324 + A C G T +01 0.962 97.115 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 97.115 0.962 0.962 +06 97.115 0.962 0.962 0.962 +07 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_SYNCRIP_158 b/resources/ATtRACT_mmu/motif_SYNCRIP_158 new file mode 100644 index 0000000..2644547 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_SYNCRIP_158 @@ -0,0 +1,13 @@ +// +NA SYNCRIP_158 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 97.115 0.962 0.962 +04 0.962 0.962 0.962 97.115 +05 0.962 0.962 0.962 97.115 +06 0.962 0.962 0.962 97.115 +07 0.962 0.962 0.962 97.115 +08 0.962 0.962 0.962 97.115 +09 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_TLR3_329 b/resources/ATtRACT_mmu/motif_TLR3_329 new file mode 100644 index 0000000..9719cad --- /dev/null +++ b/resources/ATtRACT_mmu/motif_TLR3_329 @@ -0,0 +1,8 @@ +// +NA TLR3_329 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 0.962 97.115 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_TLR3_358 b/resources/ATtRACT_mmu/motif_TLR3_358 new file mode 100644 index 0000000..c6cbec3 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_TLR3_358 @@ -0,0 +1,8 @@ +// +NA TLR3_358 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 97.115 0.962 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_TLR3_468 b/resources/ATtRACT_mmu/motif_TLR3_468 new file mode 100644 index 0000000..d3f40fe --- /dev/null +++ b/resources/ATtRACT_mmu/motif_TLR3_468 @@ -0,0 +1,9 @@ +// +NA TLR3_468 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 0.962 97.115 +03 0.962 97.115 0.962 0.962 +04 0.962 97.115 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_TLR3_479 b/resources/ATtRACT_mmu/motif_TLR3_479 new file mode 100644 index 0000000..48325b7 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_TLR3_479 @@ -0,0 +1,9 @@ +// +NA TLR3_479 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 97.115 0.962 0.962 0.962 +04 97.115 0.962 0.962 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_TLR3_568 b/resources/ATtRACT_mmu/motif_TLR3_568 new file mode 100644 index 0000000..cae0456 --- /dev/null +++ b/resources/ATtRACT_mmu/motif_TLR3_568 @@ -0,0 +1,9 @@ +// +NA TLR3_568 + A C G T +01 97.115 0.962 0.962 0.962 +02 97.115 0.962 0.962 0.962 +03 97.115 0.962 0.962 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_YBX2_153 b/resources/ATtRACT_mmu/motif_YBX2_153 new file mode 100644 index 0000000..2f3109c --- /dev/null +++ b/resources/ATtRACT_mmu/motif_YBX2_153 @@ -0,0 +1,11 @@ +// +NA YBX2_153 + A C G T +01 33.324 33.324 0.028 33.324 +02 49.972 49.972 0.028 0.028 +03 0.028 99.917 0.028 0.028 +04 99.917 0.028 0.028 0.028 +05 0.028 49.972 0.028 49.972 +06 0.028 99.917 0.028 0.028 +07 33.324 33.324 0.028 33.324 +// \ No newline at end of file diff --git a/resources/ATtRACT_mmu/motif_YBX3_113 b/resources/ATtRACT_mmu/motif_YBX3_113 new file mode 100644 index 0000000..6240a1e --- /dev/null +++ b/resources/ATtRACT_mmu/motif_YBX3_113 @@ -0,0 +1,11 @@ +// +NA YBX3_113 + A C G T +01 33.324 33.324 0.028 33.324 +02 49.972 49.972 0.028 0.028 +03 0.028 99.917 0.028 0.028 +04 99.917 0.028 0.028 0.028 +05 0.028 49.972 0.028 49.972 +06 0.028 99.917 0.028 0.028 +07 33.324 33.324 0.028 33.324 +// \ No newline at end of file diff --git a/scripts/create-conda-environment-dev.sh b/scripts/create-conda-environment-dev.sh new file mode 100644 index 0000000..6afdf59 --- /dev/null +++ b/scripts/create-conda-environment-dev.sh @@ -0,0 +1,16 @@ +############################################################################### +# +# Create conda virtual environment for the Binding Scanner (dev) +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 04-07-2020 +# LICENSE: Apache_2.0 +# USAGE: bash create-conda-environment-dev.sh +# +############################################################################### + +CWD="$(cd "$(dirname "${BASH_SOURCE[0]}")" >/dev/null 2>&1 && pwd)" +conda env create --file "$CWD"/../envs/dev.yml diff --git a/scripts/create-conda-environment-main.sh b/scripts/create-conda-environment-main.sh new file mode 100644 index 0000000..ca413f9 --- /dev/null +++ b/scripts/create-conda-environment-main.sh @@ -0,0 +1,16 @@ +############################################################################### +# +# Create conda virtual environment for the Binding Scanner +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 04-07-2020 +# LICENSE: Apache_2.0 +# USAGE: bash create-conda-environment-main.sh +# +############################################################################### + +CWD="$(cd "$(dirname "${BASH_SOURCE[0]}")" >/dev/null 2>&1 && pwd)" +conda env create --file "$CWD"/../envs/main.yml diff --git a/scripts/download-ATtRACT-motifs.sh b/scripts/download-ATtRACT-motifs.sh new file mode 100644 index 0000000..805d114 --- /dev/null +++ b/scripts/download-ATtRACT-motifs.sh @@ -0,0 +1,59 @@ +############################################################################### +# +# Download ATtRACT database +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 21-03-2020 +# LICENSE: Apache_2.0 +# USAGE: bash download-ATtRACT-motifs.sh -o {} +# +############################################################################### + +############################################################################### +# parse command line arguments +############################################################################### + +POSITIONAL=() +while [[ $# -gt 0 ]] +do + key="$1" + case $key in + -o|--output-directory) + OUTDIR="$2" + shift # past argument + shift # past value + ;; + *) # unknown option + POSITIONAL+=("$1") # save it in an array for later + shift # past argument + ;; + esac +done +set -- "${POSITIONAL[@]}" # restore positional parameters + +############################################################################### +# MAIN +############################################################################### + +# check arguments +if [ -z "$OUTDIR" ]; then + echo "Invalid arguments. Please provide --output-directory" + exit 1 +fi + +# exit if output directory exists +if [ -d "${OUTDIR}" ]; then + echo "Output directory already exists!" + exit 1 +fi + +# create directories +mkdir "${OUTDIR}" + +# download and unzip ATtRACT database +curl https://attract.cnic.es/attract/static/ATtRACT.zip \ + --output "${OUTDIR}"/ATtRACT.zip +unzip "${OUTDIR}"/ATtRACT.zip -d "${OUTDIR}" diff --git a/scripts/format-ATtRACT-motifs.py b/scripts/format-ATtRACT-motifs.py new file mode 100644 index 0000000..9f0f733 --- /dev/null +++ b/scripts/format-ATtRACT-motifs.py @@ -0,0 +1,148 @@ +""" +Convert motifs into MotEvo compatible format. + +Author & Copyright: Maria Katsantoni +Modified by: Maciej Bak +Contact: maciej.bak@unibas.ch +""" + +# ________________________________________________________________________________________ +# ---------------------------------------------------------------------------------------- +# import needed (external) modules +# ---------------------------------------------------------------------------------------- +import sys +import os +from argparse import ArgumentParser, RawTextHelpFormatter +import pandas as pd + + +# ________________________________________________________________________________________ +# ---------------------------------------------------------------------------------------- +# Main function +# ---------------------------------------------------------------------------------------- + + +def main(): + """main body of the script""" + + parser = ArgumentParser(description=__doc__, formatter_class=RawTextHelpFormatter) + + parser.add_argument( + "--pwms", + dest="pwms", + help="ATtRACT db file: pwm's of motifs", + required=True, + metavar="FILE", + ) + + parser.add_argument( + "--names", + dest="names", + help="ATtRACT db file: list of records", + required=True, + metavar="FILE", + ) + + parser.add_argument( + "--organism", + dest="organism", + help="Organism field in the ATtRACT record list", + required=False, + default="0", + ) + + parser.add_argument( + "--outdir", + dest="outdir", + help="Output directory for the motifs", + required=True, + default="0", + ) + + # ____________________________________________________________________________________ + # ------------------------------------------------------------------------------------ + # get the arguments + # ------------------------------------------------------------------------------------ + try: + options = parser.parse_args() + except Exception: + parser.print_help() + + if len(sys.argv) == 1: + parser.print_help() + sys.exit(1) + + get_motifs(options.names, options.pwms, options.outdir, options.organism) + + +def get_motifs(names, pwm, outdir, organism): + """main logic of the script - reformat motifs""" + attract_info = pd.read_csv( + names, header=0, sep="\t", index_col=None, comment="#", engine="python" + ) + + if organism != "0": + attract_info = attract_info[attract_info["Organism"] == organism] + + motifs = open(pwm, "r") + each_motif = pd.DataFrame() + info = "" + counter_motif = 0 + for line in motifs.readlines(): + if line.startswith(">"): + if counter_motif >= 1: + each_motif = each_motif.round(3) + each_motif.index = each_motif.index.map("{:02}".format) + outfile = os.path.join(outdir, "motif_" + str(info)) + template = """//\nNA """ + str(info) + """\n{}//""" + with open(outfile, "w") as fp: + fp.write( + template.format( + each_motif.to_csv(sep="\t", index=True, header=True) + ) + ) + count = 1 + each_motif = pd.DataFrame() + name = line.strip("\n").strip(">").split("\t") + each_motif = pd.DataFrame() + if name[0] in attract_info["Matrix_id"].values: + info = attract_info[["Gene_name", "Matrix_id"]][ + attract_info["Matrix_id"] == name[0] + ].values[0] + else: + counter_motif = 0 + continue + info = "_".join(info) + info = info.replace(" ", "") + info = info.replace("(", "") + info = info.replace(")", "") + info = info.replace("]", "") + info = info.replace("[", "") + info = info.replace("-", "_") + counter_motif += 1 + else: + line = line.strip("\n") + values = line.split("\t") + each_motif.loc[count, "A"] = float(values[0]) * 100 + each_motif.loc[count, "C"] = float(values[1]) * 100 + each_motif.loc[count, "G"] = float(values[2]) * 100 + each_motif.loc[count, "T"] = float(values[3]) * 100 + count += 1 + each_motif.index = each_motif.index.map("{:02}".format) + outfile = os.path.join(outdir, "motif_" + str(info)) + template = """//\nNA """ + str(info) + """\n{}//""" + with open(outfile, "w") as fp: + fp.write(template.format(each_motif.to_csv(sep="\t", index=True, header=True))) + motifs.close() + + +# ________________________________________________________________________________________ +# ---------------------------------------------------------------------------------------- +# Call the Main function and catch Keyboard interrups +# ---------------------------------------------------------------------------------------- +if __name__ == "__main__": + try: + main() + except KeyboardInterrupt: + sys.stderr.write("User interrupt!\n") + sys.exit(0) diff --git a/tests/integration/config.yml b/tests/integration/config.yml new file mode 100755 index 0000000..bf2a5e1 --- /dev/null +++ b/tests/integration/config.yml @@ -0,0 +1,36 @@ +############################################################################### +# +# Config options for the snakemake pipeline +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 09-04-2020 +# LICENSE: Apache_2.0 +# +############################################################################### +--- + +# absolute path to the pipeline directory +pipeline_path: "" + +# input sequence from the user +sequence: "ATGTGAGTGAAGTGTGGGAAAGATGACTCGATATATCTGGATGCTAGGGATCGGATGGCGATACG" + +# path to the directory with TRANSFAC-formatted PWM files +pwm_directory: "tests/integration/pwm" + +# path for the output directory +outdir: "tests/integration/output" + +# MotEvo parameter: prior probability for the background binding +MotEvo_bg_binding_prior: 0.99 + +# MotEvo parameter: prior minimum binding posterior probability +MotEvo_min_binding_posterior: 0.01 + +# MotEvo parameter: order of the Markov chain +MotEvo_Markov_chain_order: 1 + +... diff --git a/tests/integration/execution/snakemake_cluster_run_conda_environments.sh b/tests/integration/execution/snakemake_cluster_run_conda_environments.sh new file mode 100755 index 0000000..4177d14 --- /dev/null +++ b/tests/integration/execution/snakemake_cluster_run_conda_environments.sh @@ -0,0 +1,37 @@ +# Run the pipeline on a SLURM-managed computational cluster with conda environments + +cleanup () { + rc=$? + rm -rf .snakemake/ + rm -rf ../output/ + cd "$user_dir" + echo "Exit status: $rc" +} +trap cleanup SIGINT + +set -eo pipefail # ensures that script exits at first command that exits with non-zero status +set -u # ensures that script exits when unset variables are used +set -x # facilitates debugging by printing out executed commands + +user_dir=$PWD +repo_dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" >/dev/null 2>&1 && pwd)/../../.." +cd "$repo_dir" + +snakemake \ + --snakefile="workflow/Snakefile" \ + --configfile="tests/integration/config.yml" \ + --cluster-config "workflow/config/SLURM-cluster-config.json" \ + --use-conda \ + --cores=128 \ + --local-cores 1 \ + --printshellcmds \ + --verbose \ + --latency-wait 60 \ + --cluster \ + "sbatch \ + --cpus-per-task={cluster.threads} \ + --mem={cluster.mem} \ + --qos={cluster.queue} \ + --time={cluster.time} \ + --output={params.LOG_cluster_log}-%j-%N.log \ + -p scicore" diff --git a/tests/integration/execution/snakemake_dag_run.sh b/tests/integration/execution/snakemake_dag_run.sh new file mode 100755 index 0000000..79fce17 --- /dev/null +++ b/tests/integration/execution/snakemake_dag_run.sh @@ -0,0 +1,27 @@ +# Create the DAG (Directed Acyclic Graph) for the workflow + +cleanup () { + rc=$? + rm -rf ../../../images/dag.pdf + cd "$user_dir" + echo "Exit status: $rc" +} +trap cleanup SIGINT + +set -eo pipefail # ensures that script exits at first command that exits with non-zero status +set -u # ensures that script exits when unset variables are used +set -x # facilitates debugging by printing out executed commands + +user_dir=$PWD +repo_dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" >/dev/null 2>&1 && pwd)/../../.." +cd "$repo_dir" + +snakemake \ + --snakefile="workflow/Snakefile" \ + --configfile="tests/integration/config.yml" \ + --printshellcmds \ + --dryrun \ + --verbose \ + --dag \ + | dot -Tsvg \ + > ./images/dag.svg diff --git a/tests/integration/execution/snakemake_local_run_conda_environments.sh b/tests/integration/execution/snakemake_local_run_conda_environments.sh new file mode 100755 index 0000000..d568f83 --- /dev/null +++ b/tests/integration/execution/snakemake_local_run_conda_environments.sh @@ -0,0 +1,26 @@ +# Run the pipeline on a local machine with conda environments + +cleanup () { + rc=$? + rm -rf .snakemake/ + rm -rf ../output/ + cd "$user_dir" + echo "Exit status: $rc" +} +trap cleanup SIGINT + +set -eo pipefail # ensures that script exits at first command that exits with non-zero status +set -u # ensures that script exits when unset variables are used +set -x # facilitates debugging by printing out executed commands + +user_dir=$PWD +repo_dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" >/dev/null 2>&1 && pwd)/../../.." +cd "$repo_dir" + +snakemake \ + --snakefile="workflow/Snakefile" \ + --configfile="tests/integration/config.yml" \ + --use-conda \ + --cores=1 \ + --printshellcmds \ + --verbose diff --git a/tests/integration/execution/snakemake_local_run_singularity_environments.sh b/tests/integration/execution/snakemake_local_run_singularity_environments.sh new file mode 100755 index 0000000..98888cd --- /dev/null +++ b/tests/integration/execution/snakemake_local_run_singularity_environments.sh @@ -0,0 +1,26 @@ +# Run the pipeline on a local machine with conda environments + +cleanup () { + rc=$? + rm -rf .snakemake/ + rm -rf ../output/ + cd "$user_dir" + echo "Exit status: $rc" +} +trap cleanup SIGINT + +set -eo pipefail # ensures that script exits at first command that exits with non-zero status +set -u # ensures that script exits when unset variables are used +set -x # facilitates debugging by printing out executed commands + +user_dir=$PWD +repo_dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" >/dev/null 2>&1 && pwd)/../../.." +cd "$repo_dir" + +snakemake \ + --snakefile="workflow/Snakefile" \ + --configfile="tests/integration/config.yml" \ + --use-singularity \ + --cores=1 \ + --printshellcmds \ + --verbose diff --git a/tests/integration/execution/snakemake_rulegraph_run.sh b/tests/integration/execution/snakemake_rulegraph_run.sh new file mode 100755 index 0000000..5c36ea1 --- /dev/null +++ b/tests/integration/execution/snakemake_rulegraph_run.sh @@ -0,0 +1,27 @@ +# Create the Rule Graph for the workflow + +cleanup () { + rc=$? + rm -rf ../../../images/rulegraph.svg + cd "$user_dir" + echo "Exit status: $rc" +} +trap cleanup SIGINT + +set -eo pipefail # ensures that script exits at first command that exits with non-zero status +set -u # ensures that script exits when unset variables are used +set -x # facilitates debugging by printing out executed commands + +user_dir=$PWD +repo_dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" >/dev/null 2>&1 && pwd)/../../.." +cd "$repo_dir" + +snakemake \ + --snakefile="workflow/Snakefile" \ + --configfile="tests/integration/config.yml" \ + --printshellcmds \ + --dryrun \ + --verbose \ + --rulegraph \ + | dot -Tsvg \ + > ./images/rulegraph.svg diff --git a/tests/integration/expected_output.md5 b/tests/integration/expected_output.md5 new file mode 100644 index 0000000..09202be --- /dev/null +++ b/tests/integration/expected_output.md5 @@ -0,0 +1,33 @@ +d0b39f0197807ab8fdfb9f8294b2bc16 ./tests/integration/output/sequence.fasta +281a3ab4be432577381e6b64a628c154 ./tests/integration/output/MotEvo_parameters.txt +b1eb281f0f5b41516b7847b4398220dc ./tests/integration/output/motevo/motif_HNRNPF_826/posterior_sites +1eb4365fcfc54bea454dc296863a9cad ./tests/integration/output/motevo/motif_HNRNPF_826/posteriors +d41d8cd98f00b204e9800998ecf8427e ./tests/integration/output/motevo/motif_HNRNPF_821/posterior_sites +2f0bbba5237c73859cd212fec4dc3418 ./tests/integration/output/motevo/motif_HNRNPF_821/posteriors +15e254bc6041e4474b5c284ee2fa7dc0 ./tests/integration/output/motevo/motif_HNRNPF_828/posterior_sites +dcc45178f17b2eea31474fb3764be204 ./tests/integration/output/motevo/motif_HNRNPF_828/posteriors +d41d8cd98f00b204e9800998ecf8427e ./tests/integration/output/motevo/motif_HNRNPF_829/posterior_sites +75b0797db55efbbca8e28b908cc3c693 ./tests/integration/output/motevo/motif_HNRNPF_829/posteriors +c4c2dd970e1ce4f3e42b51b9c65860d4 ./tests/integration/output/motevo/motif_HNRNPF_820/posterior_sites +4c595e3cee3e00a0675b4d01d71106e7 ./tests/integration/output/motevo/motif_HNRNPF_820/posteriors +d7a296a6140387564084c95732c0f692 ./tests/integration/output/motevo/motif_HNRNPF_827/posterior_sites +ecf600dbebb54ba5ecaaef9be59577d9 ./tests/integration/output/motevo/motif_HNRNPF_827/posteriors +d41d8cd98f00b204e9800998ecf8427e ./tests/integration/output/motevo/motif_HNRNPF_822/posterior_sites +9f424c9af4c2c445836983d73829f412 ./tests/integration/output/motevo/motif_HNRNPF_822/posteriors +2b5276348c807646dc7f3436d342e999 ./tests/integration/output/motevo/motif_HNRNPF_825/posterior_sites +d920cfaff4fb96ecce6b7d7cd1abfe93 ./tests/integration/output/motevo/motif_HNRNPF_825/posteriors +fe56b8577bada06fea45bb8835e7d7ee ./tests/integration/output/motevo/motif_HNRNPF_824/posterior_sites +faa2f9e3e8f432575e281878d93a85a6 ./tests/integration/output/motevo/motif_HNRNPF_824/posteriors +c0a4a9155ec7958b00bd3140e97c6dc9 ./tests/integration/output/motevo/motif_HNRNPF_823/posterior_sites +20e7921795665bbe24e585e741705634 ./tests/integration/output/motevo/motif_HNRNPF_823/posteriors +d00f0ca9b1561551a9cfe17a09747251 ./tests/integration/output/combined_MotEvo_results.tsv +60dd0b7f9065f07660c385bac79ca94e ./tests/integration/output/sequence_logos/motif_HNRNPF_820.png +25eb71df5f876d8f575dbc417319487c ./tests/integration/output/sequence_logos/motif_HNRNPF_821.png +25eb71df5f876d8f575dbc417319487c ./tests/integration/output/sequence_logos/motif_HNRNPF_822.png +3e8890a0edb2664d2d8603119b3a96d8 ./tests/integration/output/sequence_logos/motif_HNRNPF_823.png +b9c855c85a7777f8fb12806aed9fd6b9 ./tests/integration/output/sequence_logos/motif_HNRNPF_824.png +202448ac8cde24c4a2b5a1f8c8da5381 ./tests/integration/output/sequence_logos/motif_HNRNPF_825.png +36df64ab23ec2afaa3ce936bd196c400 ./tests/integration/output/sequence_logos/motif_HNRNPF_826.png +d1b324f46221514588b00148bac38e5c ./tests/integration/output/sequence_logos/motif_HNRNPF_827.png +0dc19411798fda72ffcd8000b38d9dc9 ./tests/integration/output/sequence_logos/motif_HNRNPF_828.png +2b68e5759d8f598d39f4ab90ccb3da67 ./tests/integration/output/sequence_logos/motif_HNRNPF_829.png diff --git a/tests/integration/expected_output.txt b/tests/integration/expected_output.txt new file mode 100644 index 0000000..51ae313 --- /dev/null +++ b/tests/integration/expected_output.txt @@ -0,0 +1,34 @@ +./tests/integration/output/sequence.fasta +./tests/integration/output/MotEvo_parameters.txt +./tests/integration/output/motevo/motif_HNRNPF_826/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_826/posteriors +./tests/integration/output/motevo/motif_HNRNPF_821/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_821/posteriors +./tests/integration/output/motevo/motif_HNRNPF_828/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_828/posteriors +./tests/integration/output/motevo/motif_HNRNPF_829/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_829/posteriors +./tests/integration/output/motevo/motif_HNRNPF_820/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_820/posteriors +./tests/integration/output/motevo/motif_HNRNPF_827/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_827/posteriors +./tests/integration/output/motevo/motif_HNRNPF_822/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_822/posteriors +./tests/integration/output/motevo/motif_HNRNPF_825/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_825/posteriors +./tests/integration/output/motevo/motif_HNRNPF_824/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_824/posteriors +./tests/integration/output/motevo/motif_HNRNPF_823/posterior_sites +./tests/integration/output/motevo/motif_HNRNPF_823/posteriors +./tests/integration/output/combined_MotEvo_results.tsv +./tests/integration/output/sequence_logos/motif_HNRNPF_820.png +./tests/integration/output/sequence_logos/motif_HNRNPF_821.png +./tests/integration/output/sequence_logos/motif_HNRNPF_822.png +./tests/integration/output/sequence_logos/motif_HNRNPF_823.png +./tests/integration/output/sequence_logos/motif_HNRNPF_824.png +./tests/integration/output/sequence_logos/motif_HNRNPF_825.png +./tests/integration/output/sequence_logos/motif_HNRNPF_826.png +./tests/integration/output/sequence_logos/motif_HNRNPF_827.png +./tests/integration/output/sequence_logos/motif_HNRNPF_828.png +./tests/integration/output/sequence_logos/motif_HNRNPF_829.png + diff --git a/tests/integration/expected_output_singularity.md5 b/tests/integration/expected_output_singularity.md5 new file mode 100644 index 0000000..e91563a --- /dev/null +++ b/tests/integration/expected_output_singularity.md5 @@ -0,0 +1,33 @@ +d0b39f0197807ab8fdfb9f8294b2bc16 ./tests/integration/output/sequence.fasta +281a3ab4be432577381e6b64a628c154 ./tests/integration/output/MotEvo_parameters.txt +b1eb281f0f5b41516b7847b4398220dc ./tests/integration/output/motevo/motif_HNRNPF_826/posterior_sites +1eb4365fcfc54bea454dc296863a9cad ./tests/integration/output/motevo/motif_HNRNPF_826/posteriors +d41d8cd98f00b204e9800998ecf8427e ./tests/integration/output/motevo/motif_HNRNPF_821/posterior_sites +2f0bbba5237c73859cd212fec4dc3418 ./tests/integration/output/motevo/motif_HNRNPF_821/posteriors +15e254bc6041e4474b5c284ee2fa7dc0 ./tests/integration/output/motevo/motif_HNRNPF_828/posterior_sites +dcc45178f17b2eea31474fb3764be204 ./tests/integration/output/motevo/motif_HNRNPF_828/posteriors +d41d8cd98f00b204e9800998ecf8427e ./tests/integration/output/motevo/motif_HNRNPF_829/posterior_sites +75b0797db55efbbca8e28b908cc3c693 ./tests/integration/output/motevo/motif_HNRNPF_829/posteriors +c4c2dd970e1ce4f3e42b51b9c65860d4 ./tests/integration/output/motevo/motif_HNRNPF_820/posterior_sites +4c595e3cee3e00a0675b4d01d71106e7 ./tests/integration/output/motevo/motif_HNRNPF_820/posteriors +d7a296a6140387564084c95732c0f692 ./tests/integration/output/motevo/motif_HNRNPF_827/posterior_sites +ecf600dbebb54ba5ecaaef9be59577d9 ./tests/integration/output/motevo/motif_HNRNPF_827/posteriors +d41d8cd98f00b204e9800998ecf8427e ./tests/integration/output/motevo/motif_HNRNPF_822/posterior_sites +9f424c9af4c2c445836983d73829f412 ./tests/integration/output/motevo/motif_HNRNPF_822/posteriors +2b5276348c807646dc7f3436d342e999 ./tests/integration/output/motevo/motif_HNRNPF_825/posterior_sites +d920cfaff4fb96ecce6b7d7cd1abfe93 ./tests/integration/output/motevo/motif_HNRNPF_825/posteriors +fe56b8577bada06fea45bb8835e7d7ee ./tests/integration/output/motevo/motif_HNRNPF_824/posterior_sites +faa2f9e3e8f432575e281878d93a85a6 ./tests/integration/output/motevo/motif_HNRNPF_824/posteriors +c0a4a9155ec7958b00bd3140e97c6dc9 ./tests/integration/output/motevo/motif_HNRNPF_823/posterior_sites +20e7921795665bbe24e585e741705634 ./tests/integration/output/motevo/motif_HNRNPF_823/posteriors +d00f0ca9b1561551a9cfe17a09747251 ./tests/integration/output/combined_MotEvo_results.tsv +d8f120c8e02b2af530fe9252e3bbcc20 ./tests/integration/output/sequence_logos/motif_HNRNPF_820.png +e9f6a131a1036be627b222d98935a0e2 ./tests/integration/output/sequence_logos/motif_HNRNPF_821.png +e9f6a131a1036be627b222d98935a0e2 ./tests/integration/output/sequence_logos/motif_HNRNPF_822.png +830ad3e5afa371d5e120ecd187098b13 ./tests/integration/output/sequence_logos/motif_HNRNPF_823.png +a15351308ba655eb2c7d4568c4a991a8 ./tests/integration/output/sequence_logos/motif_HNRNPF_824.png +cf559d3eae6f1b8d2169218712b9f6bf ./tests/integration/output/sequence_logos/motif_HNRNPF_825.png +9001351400e24b7e6ed9c7d658ef76b5 ./tests/integration/output/sequence_logos/motif_HNRNPF_826.png +e1586250511c0907daeedab2c6e941bc ./tests/integration/output/sequence_logos/motif_HNRNPF_827.png +febf7a4a87425ea99ca6edb8d1c9df68 ./tests/integration/output/sequence_logos/motif_HNRNPF_828.png +249373204083f2572612825d5871a3c8 ./tests/integration/output/sequence_logos/motif_HNRNPF_829.png diff --git a/tests/integration/pwm/motif_HNRNPF_820 b/tests/integration/pwm/motif_HNRNPF_820 new file mode 100644 index 0000000..c7e97c1 --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_820 @@ -0,0 +1,9 @@ +// +NA HNRNPF_820 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/tests/integration/pwm/motif_HNRNPF_821 b/tests/integration/pwm/motif_HNRNPF_821 new file mode 100644 index 0000000..cf7fa83 --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_821 @@ -0,0 +1,11 @@ +// +NA HNRNPF_821 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/tests/integration/pwm/motif_HNRNPF_822 b/tests/integration/pwm/motif_HNRNPF_822 new file mode 100644 index 0000000..50cf5fb --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_822 @@ -0,0 +1,11 @@ +// +NA HNRNPF_822 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/tests/integration/pwm/motif_HNRNPF_823 b/tests/integration/pwm/motif_HNRNPF_823 new file mode 100644 index 0000000..7f7cbeb --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_823 @@ -0,0 +1,9 @@ +// +NA HNRNPF_823 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/tests/integration/pwm/motif_HNRNPF_824 b/tests/integration/pwm/motif_HNRNPF_824 new file mode 100644 index 0000000..04f609d --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_824 @@ -0,0 +1,9 @@ +// +NA HNRNPF_824 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/tests/integration/pwm/motif_HNRNPF_825 b/tests/integration/pwm/motif_HNRNPF_825 new file mode 100644 index 0000000..eb52c87 --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_825 @@ -0,0 +1,9 @@ +// +NA HNRNPF_825 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/tests/integration/pwm/motif_HNRNPF_826 b/tests/integration/pwm/motif_HNRNPF_826 new file mode 100644 index 0000000..faee6e2 --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_826 @@ -0,0 +1,9 @@ +// +NA HNRNPF_826 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/tests/integration/pwm/motif_HNRNPF_827 b/tests/integration/pwm/motif_HNRNPF_827 new file mode 100644 index 0000000..6688629 --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_827 @@ -0,0 +1,9 @@ +// +NA HNRNPF_827 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 0.962 97.115 +// \ No newline at end of file diff --git a/tests/integration/pwm/motif_HNRNPF_828 b/tests/integration/pwm/motif_HNRNPF_828 new file mode 100644 index 0000000..80cb60b --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_828 @@ -0,0 +1,9 @@ +// +NA HNRNPF_828 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/tests/integration/pwm/motif_HNRNPF_829 b/tests/integration/pwm/motif_HNRNPF_829 new file mode 100644 index 0000000..6932597 --- /dev/null +++ b/tests/integration/pwm/motif_HNRNPF_829 @@ -0,0 +1,9 @@ +// +NA HNRNPF_829 + A C G T +01 0.962 97.115 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 97.115 0.962 0.962 +// \ No newline at end of file diff --git a/tests/unit/Plot-heatmap-for-motifs/combined_MotEvo_results.tsv b/tests/unit/Plot-heatmap-for-motifs/combined_MotEvo_results.tsv new file mode 100644 index 0000000..727a882 --- /dev/null +++ b/tests/unit/Plot-heatmap-for-motifs/combined_MotEvo_results.tsv @@ -0,0 +1,8 @@ +pwm_id binding_position binding_sequence binding_posterior binding_energy +HNRNPF_823 46-50 AGGGA 0.674978 6.71171 +HNRNPF_824 15-19 TGGGA 0.560144 6.71171 +HNRNPF_824 46-50 AGGGA 0.030141 2.51049 +HNRNPF_823 15-19 TGGGA 0.018685 2.51049 +HNRNPF_823 6-10 AGTGA 0.017773 2.51049 +HNRNPF_820 14-18 GTGGG 0.015291 2.51049 +HNRNPF_824 51-55 TCGGA 0.014195 2.51049 diff --git a/tests/unit/Plot-heatmap-for-motifs/expected_output.md5 b/tests/unit/Plot-heatmap-for-motifs/expected_output.md5 new file mode 100644 index 0000000..18bfe83 --- /dev/null +++ b/tests/unit/Plot-heatmap-for-motifs/expected_output.md5 @@ -0,0 +1 @@ +16f237cb220adb1589f400b2561dfee6 ./tests/unit/Plot-heatmap-for-motifs/ProbabilityvsSequences.svg diff --git a/tests/unit/Plot-heatmap-for-motifs/expected_output.txt b/tests/unit/Plot-heatmap-for-motifs/expected_output.txt new file mode 100644 index 0000000..7c75fa3 --- /dev/null +++ b/tests/unit/Plot-heatmap-for-motifs/expected_output.txt @@ -0,0 +1 @@ +./tests/unit/Plot-heatmap-for-motifs/ProbabilityvsSequences.svg diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_820.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_820.png new file mode 100644 index 0000000..0c8a63f Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_820.png differ diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_821.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_821.png new file mode 100644 index 0000000..595189b Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_821.png differ diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_822.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_822.png new file mode 100644 index 0000000..595189b Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_822.png differ diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_823.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_823.png new file mode 100644 index 0000000..ac3d8e4 Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_823.png differ diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_824.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_824.png new file mode 100644 index 0000000..34c6afd Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_824.png differ diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_825.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_825.png new file mode 100644 index 0000000..f8ca464 Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_825.png differ diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_826.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_826.png new file mode 100644 index 0000000..902c8ef Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_826.png differ diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_827.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_827.png new file mode 100644 index 0000000..4f63717 Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_827.png differ diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_828.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_828.png new file mode 100644 index 0000000..8e29e87 Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_828.png differ diff --git a/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_829.png b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_829.png new file mode 100644 index 0000000..3fa4593 Binary files /dev/null and b/tests/unit/Plot-heatmap-for-motifs/sequence_logos/motif_HNRNPF_829.png differ diff --git a/tests/unit/combine_results/expected_output.md5 b/tests/unit/combine_results/expected_output.md5 new file mode 100644 index 0000000..afbe504 --- /dev/null +++ b/tests/unit/combine_results/expected_output.md5 @@ -0,0 +1 @@ +1529b2a9ad9485a578805fe4ca8b0c11 ./tests/unit/combine_results/combined_MotEvo_results.tsv diff --git a/tests/unit/combine_results/expected_output.txt b/tests/unit/combine_results/expected_output.txt new file mode 100644 index 0000000..fc88cd3 --- /dev/null +++ b/tests/unit/combine_results/expected_output.txt @@ -0,0 +1 @@ +./tests/unit/combine_results/combined_MotEvo_results.tsv diff --git a/tests/unit/combine_results/motif_HNRNPF_820/posterior_sites b/tests/unit/combine_results/motif_HNRNPF_820/posterior_sites new file mode 100644 index 0000000..8cf166a --- /dev/null +++ b/tests/unit/combine_results/motif_HNRNPF_820/posterior_sites @@ -0,0 +1,2 @@ +14-18 + 0.015291 HNRNPF_820 MOTEVO_input-sequence +GTGGG 2.51049 MOTEVO_input-sequence diff --git a/tests/unit/combine_results/motif_HNRNPF_820/posteriors b/tests/unit/combine_results/motif_HNRNPF_820/posteriors new file mode 100644 index 0000000..49c5fb9 --- /dev/null +++ b/tests/unit/combine_results/motif_HNRNPF_820/posteriors @@ -0,0 +1,4 @@ +WM_name final_prior nr_of_sites density +HNRNPF_820 0.000299866 0.019468 0.00149753 +background 0.9997 64.9027 0.998502 +UFEwm 0 0 0 diff --git a/tests/unit/combine_results/motif_HNRNPF_821/posterior_sites b/tests/unit/combine_results/motif_HNRNPF_821/posterior_sites new file mode 100644 index 0000000..e69de29 diff --git a/tests/unit/combine_results/motif_HNRNPF_821/posteriors b/tests/unit/combine_results/motif_HNRNPF_821/posteriors new file mode 100644 index 0000000..d37ee2f --- /dev/null +++ b/tests/unit/combine_results/motif_HNRNPF_821/posteriors @@ -0,0 +1,4 @@ +WM_name final_prior nr_of_sites density +HNRNPF_821 0 0 0 +background 1 64.9594 1 +UFEwm 0 0 0 diff --git a/tests/unit/combine_results/motif_HNRNPF_822/posterior_sites b/tests/unit/combine_results/motif_HNRNPF_822/posterior_sites new file mode 100644 index 0000000..e69de29 diff --git a/tests/unit/combine_results/motif_HNRNPF_822/posteriors b/tests/unit/combine_results/motif_HNRNPF_822/posteriors new file mode 100644 index 0000000..d8205af --- /dev/null +++ b/tests/unit/combine_results/motif_HNRNPF_822/posteriors @@ -0,0 +1,4 @@ +WM_name final_prior nr_of_sites density +HNRNPF_822 0 0 0 +background 1 64.9594 1 +UFEwm 0 0 0 diff --git a/tests/unit/combine_results/motif_HNRNPF_823/posterior_sites b/tests/unit/combine_results/motif_HNRNPF_823/posterior_sites new file mode 100644 index 0000000..41c3354 --- /dev/null +++ b/tests/unit/combine_results/motif_HNRNPF_823/posterior_sites @@ -0,0 +1,6 @@ +6-10 + 0.017773 HNRNPF_823 MOTEVO_input-sequence +AGTGA 2.51049 MOTEVO_input-sequence +15-19 + 0.018685 HNRNPF_823 MOTEVO_input-sequence +TGGGA 2.51049 MOTEVO_input-sequence +46-50 + 0.674978 HNRNPF_823 MOTEVO_input-sequence +AGGGA 6.71171 MOTEVO_input-sequence diff --git a/tests/unit/combine_results/motif_HNRNPF_823/posteriors b/tests/unit/combine_results/motif_HNRNPF_823/posteriors new file mode 100644 index 0000000..d15b321 --- /dev/null +++ b/tests/unit/combine_results/motif_HNRNPF_823/posteriors @@ -0,0 +1,4 @@ +WM_name final_prior nr_of_sites density +HNRNPF_823 0.0115076 0.71508 0.0550061 +background 0.988492 61.4246 0.944994 +UFEwm 0 0 0 diff --git a/tests/unit/combine_results/motif_HNRNPF_824/posterior_sites b/tests/unit/combine_results/motif_HNRNPF_824/posterior_sites new file mode 100644 index 0000000..17245b3 --- /dev/null +++ b/tests/unit/combine_results/motif_HNRNPF_824/posterior_sites @@ -0,0 +1,6 @@ +15-19 + 0.560144 HNRNPF_824 MOTEVO_input-sequence +TGGGA 6.71171 MOTEVO_input-sequence +46-50 + 0.030141 HNRNPF_824 MOTEVO_input-sequence +AGGGA 2.51049 MOTEVO_input-sequence +51-55 + 0.014195 HNRNPF_824 MOTEVO_input-sequence +TCGGA 2.51049 MOTEVO_input-sequence diff --git a/tests/unit/combine_results/motif_HNRNPF_824/posteriors b/tests/unit/combine_results/motif_HNRNPF_824/posteriors new file mode 100644 index 0000000..5f4b724 --- /dev/null +++ b/tests/unit/combine_results/motif_HNRNPF_824/posteriors @@ -0,0 +1,4 @@ +WM_name final_prior nr_of_sites density +HNRNPF_824 0.00983036 0.614799 0.0472922 +background 0.99017 61.926 0.952708 +UFEwm 0 0 0 diff --git a/tests/unit/format-ATtRACT-motifs/ATtRACT/ATtRACT_db.txt b/tests/unit/format-ATtRACT-motifs/ATtRACT/ATtRACT_db.txt new file mode 100644 index 0000000..3a9c900 --- /dev/null +++ b/tests/unit/format-ATtRACT-motifs/ATtRACT/ATtRACT_db.txt @@ -0,0 +1,4883 @@ +Gene_name Gene_id Mutated Organism Motif Len Experiment_description Database Pubmed Experiment_description Family Matrix_id Score +3IVK 3IVK no Mus_musculus GAAACA 6 X-RAY DIFFRACTION PDB 19965478 X-RAY DIFFRACTION N/A 519 1.000000** +3IVK 3IVK no Mus_musculus UGGG 4 X-RAY DIFFRACTION PDB 19965478 X-RAY DIFFRACTION N/A 574 1.000000** +4KZD 4KZD no Mus_musculus GAAAC 5 X-RAY DIFFRACTION PDB 24952597 X-RAY DIFFRACTION N/A 464 1.000000** +4KZE 4KZE no Mus_musculus GAAAC 5 X-RAY DIFFRACTION PDB 24952597 X-RAY DIFFRACTION N/A 437 1.000000** +4Q9Q 4Q9Q no Mus_musculus GAAAC 5 X-RAY DIFFRACTION PDB 24952597 X-RAY DIFFRACTION N/A 423 1.000000** +4Q9R 4Q9R no Mus_musculus CGAAAC 6 X-RAY DIFFRACTION PDB 24952597 X-RAY DIFFRACTION N/A 433 1.000000** +A1CF ENSG00000148584 no Homo_sapiens UGAUCAGUAUA 11 UV cross-linking R 10669759 UV cross-linking RRM 110 1.000000** +A1CF ENSG00000148584 no Homo_sapiens AUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M001_0.6 0.126952 +A1CF ENSG00000148584 no Homo_sapiens UUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M001_0.6 0.126411 +A1CF ENSG00000148584 no Homo_sapiens AUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M001_0.6 0.189114** +A1CF ENSG00000148584 no Homo_sapiens UUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M001_0.6 0.188308 +A1CF ENSGALG00000003765 no Gallus_gallus AUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.029649 +A1CF ENSGALG00000003765 no Gallus_gallus UUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.04527 +A1CF ENSGALG00000003765 no Gallus_gallus GUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.075703 +A1CF ENSGALG00000003765 no Gallus_gallus AUAAUUC 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.047471 +A1CF ENSGALG00000003765 no Gallus_gallus UUAAUUC 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.07248 +A1CF ENSGALG00000003765 no Gallus_gallus GUAAUUC 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.121206 +A1CF ENSGALG00000003765 no Gallus_gallus AUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.088966 +A1CF ENSGALG00000003765 no Gallus_gallus UUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.135836 +A1CF ENSGALG00000003765 no Gallus_gallus GUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.227153** +A2BP1 FBGN0052062 no Drosophila_melanogaster UGCAUG 6 RNAcompete C 23846655 RNAcompete RRM M118_0.6 0.742504** +ACO1 ENSG00000122729 no Homo_sapiens CAGUGA 6 SELEX C 8021254 SELEX ACONITASE_C M256_0.6 0.044315 +ACO1 ENSG00000122729 no Homo_sapiens CAGUGU 6 SELEX C 8021254 SELEX ACONITASE_C M256_0.6 0.033237 +ACO1 ENSG00000122729 no Homo_sapiens CAGUGC 6 SELEX C 8021254 SELEX ACONITASE_C M256_0.6 0.060934** +ACO1 ENSG00000122729 no Homo_sapiens CAGUGG 6 SELEX C 8021254 SELEX ACONITASE_C M256_0.6 0.013849 +ADAR ENSG00000160710 no Homo_sapiens GCGC 4 X-RAY DIFFRACTION PDB 17437712 X-RAY DIFFRACTION A_DEAMIN;DSRM;Z-ALPHA 536 1.000000** +ADAR ENSG00000160710 no Homo_sapiens GCGCG 5 X-RAY DIFFRACTION PDB 17437712 X-RAY DIFFRACTION A_DEAMIN;DSRM;Z-ALPHA 494 1.000000** +ADARB1 ENSMUSG00000020262 no Mus_musculus CCCA 4 SOLUTION NMR PDB 20946981 SOLUTION NMR DSRM 401 1.000000** +ADARB1 ENSMUSG00000020262 no Mus_musculus GGUG 4 SOLUTION NMR PDB 20946981 SOLUTION NMR DSRM 527 1.000000** +ADARB1 ENSRNOG00000001227 no Rattus_norvegicus CCCA 4 SOLUTION NMR PDB 20946981 SOLUTION NMR DSRM 379 1.000000** +ADARB1 ENSRNOG00000001227 no Rattus_norvegicus GUAU 4 SOLUTION NMR PDB 20946981 SOLUTION NMR DSRM 413 1.000000** +AGO1 ENSG00000092847 no Homo_sapiens ACUCU 5 X-RAY DIFFRACTION PDB 15152257 X-RAY DIFFRACTION PAZ;PIWI 359 1.000000** +AGO1 ENSG00000092847 no Homo_sapiens UGAGGUAGUA 10 X-RAY DIFFRACTION PDB 23746446 X-RAY DIFFRACTION PAZ;PIWI 509 1.000000** +AGO1 ENSG00000092847 no Spodoptera_frugiperda AAAAAAAAA 9 X-RAY DIFFRACTION PDB 23809764 X-RAY DIFFRACTION PAZ;PIWI 560 1.000000** +AGO1 ENSG00000092847 no Spodoptera_frugiperda AAUAUUAAA 9 X-RAY DIFFRACTION PDB 23746446 X-RAY DIFFRACTION PAZ;PIWI 579 1.000000** +AGO2 ENSG00000123908 no Homo_sapiens AAAAAAAAA 9 X-RAY DIFFRACTION PDB 22539551 X-RAY DIFFRACTION PAZ;PIWI 414 1.000000** +AGO2 ENSG00000123908 no Homo_sapiens UAAAGUGCUU 10 X-RAY DIFFRACTION PDB 22682761 X-RAY DIFFRACTION PAZ;PIWI 399 1.000000** +AKAP1 ENSG00000121057 no Homo_sapiens AUAUAUAU 8 single RNA affinity purification R 17154535 single RNA affinity purification KH 97 1.000000** +ANIA_04546 CADANIAG00005892 no Aspergillus_nidulans ACCCAA 6 RNAcompete C 23846655 RNAcompete KH M226_0.6 0.079121 +ANIA_04546 CADANIAG00005892 no Aspergillus_nidulans ACCUAA 6 RNAcompete C 23846655 RNAcompete KH M226_0.6 0.154563** +ANIA_04546 CADANIAG00005892 no Aspergillus_nidulans ACCCCA 6 RNAcompete C 23846655 RNAcompete KH M226_0.6 0.020347 +ANIA_04546 CADANIAG00005892 no Aspergillus_nidulans ACCUCA 6 RNAcompete C 23846655 RNAcompete KH M226_0.6 0.039749 +ANKHD1 ENSG00000131503 no Homo_sapiens AGACGAA 7 RNAcompete C 23846655 RNAcompete KH M002_0.6 0.075677 +ANKHD1 ENSG00000131503 no Homo_sapiens AGACGUA 7 RNAcompete C 23846655 RNAcompete KH M002_0.6 0.219875** +ANKHD1 ENSG00000131503 no Homo_sapiens AGACGAU 7 RNAcompete C 23846655 RNAcompete KH M002_0.6 0.069565 +ANKHD1 ENSG00000131503 no Homo_sapiens AGACGUU 7 RNAcompete C 23846655 RNAcompete KH M002_0.6 0.202117 +ARET FBGN0000114 no Drosophila_melanogaster UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M003_0.6 0.201859** +ARET FBGN0000114 no Drosophila_melanogaster UUUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M003_0.6 0.079099 +ARET FBGN0000114 no Drosophila_melanogaster UGUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M003_0.6 0.0704 +ARET FBGN0000114 no Drosophila_melanogaster UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M003_0.6 0.027587 +ARET FBGN0000114 no Drosophila_melanogaster UUAUAUAUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** +ARET FBGN0000114 no Drosophila_melanogaster UUGUAUAUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** +ARET FBGN0000114 no Drosophila_melanogaster UUAUGUAUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** +ARET FBGN0000114 no Drosophila_melanogaster UUGUGUAUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** +ARET FBGN0000114 no Drosophila_melanogaster UUAUAUGUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** +ARET FBGN0000114 no Drosophila_melanogaster UUGUAUGUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** +ARET FBGN0000114 no Drosophila_melanogaster UUAUGUGUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** +ARET FBGN0000114 no Drosophila_melanogaster UUGUGUGUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** +ASD-1 WBGENE00011279 no Caenorhabditis_elegans GUGUGC 6 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 482 1.000000** +ASD-1 WBGENE00011279 no Caenorhabditis_elegans UGCAUGG 7 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 448 1.000000** +ASD-1 WBGENE00011279 no Caenorhabditis_elegans AGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.160976 +ASD-1 WBGENE00011279 no Caenorhabditis_elegans UGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.298191** +ASD-1 WBGENE00011279 no Caenorhabditis_elegans AGCAUGU 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.047465 +ASD-1 WBGENE00011279 no Caenorhabditis_elegans UGCAUGU 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.087923 +ASD-1 WBGENE00011279 no Caenorhabditis_elegans AGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.050305 +ASD-1 WBGENE00011279 no Caenorhabditis_elegans UGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.093184 +AT1G76460 AT1G76460 no Arabidopsis_thaliana AGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.048347 +AT1G76460 AT1G76460 no Arabidopsis_thaliana UGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.023579 +AT1G76460 AT1G76460 no Arabidopsis_thaliana GGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.035159 +AT1G76460 AT1G76460 no Arabidopsis_thaliana AGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.117589** +AT1G76460 AT1G76460 no Arabidopsis_thaliana UGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.05735 +AT1G76460 AT1G76460 no Arabidopsis_thaliana GGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.085513 +AT1G76460 AT1G76460 no Arabidopsis_thaliana AGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.013525 +AT1G76460 AT1G76460 no Arabidopsis_thaliana UGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.006596 +AT1G76460 AT1G76460 no Arabidopsis_thaliana GGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.009836 +AT1G76460 AT1G76460 no Arabidopsis_thaliana AGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.032896 +AT1G76460 AT1G76460 no Arabidopsis_thaliana UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.016044 +AT1G76460 AT1G76460 no Arabidopsis_thaliana GGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.023922 +AT1G76460 AT1G76460 no Arabidopsis_thaliana AGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.022481 +AT1G76460 AT1G76460 no Arabidopsis_thaliana UGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.010964 +AT1G76460 AT1G76460 no Arabidopsis_thaliana GGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.016349 +AT1G76460 AT1G76460 no Arabidopsis_thaliana AGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.054678 +AT1G76460 AT1G76460 no Arabidopsis_thaliana UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.026667 +AT1G76460 AT1G76460 no Arabidopsis_thaliana GGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.039763 +B52 FBGN0004587 no Drosophila_melanogaster GGACGAA 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.016971 +B52 FBGN0004587 no Drosophila_melanogaster GGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.054428 +B52 FBGN0004587 no Drosophila_melanogaster GGACGGA 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.039686 +B52 FBGN0004587 no Drosophila_melanogaster GGAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.12728 +B52 FBGN0004587 no Drosophila_melanogaster GGACGAC 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.015576 +B52 FBGN0004587 no Drosophila_melanogaster GGAGGAC 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.049954 +B52 FBGN0004587 no Drosophila_melanogaster GGACGGC 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.036423 +B52 FBGN0004587 no Drosophila_melanogaster GGAGGGC 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.116817 +B52 FBGN0004587 no Drosophila_melanogaster GGACGAG 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.023324 +B52 FBGN0004587 no Drosophila_melanogaster GGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.074805 +B52 FBGN0004587 no Drosophila_melanogaster GGACGGG 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.054543 +B52 FBGN0004587 no Drosophila_melanogaster GGAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.174929** +BMVLG BGIBMGA004036 no Bombyx_mori UGACAU 6 X-RAY DIFFRACTION PDB 24910301 X-RAY DIFFRACTION DEAD;HELICASE_C 455 1.000000** +BRADI2G00245 BRADI2G00270 no Brachypodium_distachyon AGAA 4 X-RAY DIFFRACTION PDB 24186060 X-RAY DIFFRACTION N/A 577 1.000000** +BRU-3 FBGN0264001 no Drosophila_melanogaster GUGGUGU 7 RNAcompete C 23846655 RNAcompete RRM M117_0.6 0.253834** +BRU-3 FBGN0264001 no Drosophila_melanogaster UUGGUGU 7 RNAcompete C 23846655 RNAcompete RRM M117_0.6 0.107223 +BRU-3 FBGN0264001 no Drosophila_melanogaster GUGUUGU 7 RNAcompete C 23846655 RNAcompete RRM M117_0.6 0.105208 +BRU-3 FBGN0264001 no Drosophila_melanogaster UUGUUGU 7 RNAcompete C 23846655 RNAcompete RRM M117_0.6 0.044441 +CADANIAG00004740 CADANIAG00004740 no Aspergillus_nidulans UACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M241_0.6 0.08674 +CADANIAG00004740 CADANIAG00004740 no Aspergillus_nidulans UACUACG 7 RNAcompete C 23846655 RNAcompete RRM M241_0.6 0.135946** +CADANIAG00004740 CADANIAG00004740 no Aspergillus_nidulans UACUAAU 7 RNAcompete C 23846655 RNAcompete RRM M241_0.6 0.04354 +CADANIAG00004740 CADANIAG00004740 no Aspergillus_nidulans UACUACU 7 RNAcompete C 23846655 RNAcompete RRM M241_0.6 0.06824 +CELF1 ENSG00000149187 no Homo_sapiens CUGUCUG 7 UV cross-link with recombinant protein and with HeLa nuclear extract containing increasing protein concentrations. Mutation analysis. S 12649496 UV cross-linking RRM 592 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUGU 5 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s84 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUGUG 6 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s85 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUGUG 6 SOLUTION NMR PDB 19553194 SOLUTION NMR RRM 425 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUGUGU 7 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s86 0.495098** +CELF1 ENSG00000149187 no Homo_sapiens UGUGUGUG 8 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s87 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUGUGUGU 9 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s88 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUGUGUGUG 10 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s89 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUGUGUGUGU 11 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s90 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUGUUGUGUGU 12 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s91 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUU 4 X-RAY DIFFRACTION PDB 20947024 X-RAY DIFFRACTION RRM 542 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUUU 5 X-RAY DIFFRACTION PDB 20947024 X-RAY DIFFRACTION RRM 436 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UGUUUGU 7 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s86 0.495098** +CELF1 ENSG00000149187 no Homo_sapiens UUGUG 5 X-RAY DIFFRACTION PDB 20947024 X-RAY DIFFRACTION RRM 478 1.000000** +CELF1 ENSG00000149187 no Homo_sapiens UUGUU 5 X-RAY DIFFRACTION PDB 20947024 X-RAY DIFFRACTION RRM 522 1.000000** +CELF1 ENSRNOG00000010379 no Rattus_norvegicus UGCUG 5 SELEX and UV-crosslinking AEDB 11895477 UV cross-linking;SELEX RRM 326 1.000000** +CELF2 ENSG00000048740 no Homo_sapiens AUGUG 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.004487 +CELF2 ENSG00000048740 no Homo_sapiens AUGUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.005161 +CELF2 ENSG00000048740 no Homo_sapiens AUGUU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.007843 +CELF2 ENSG00000048740 no Homo_sapiens CAUCG 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.000518 +CELF2 ENSG00000048740 no Homo_sapiens CGUGU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.008962 +CELF2 ENSG00000048740 no Homo_sapiens GUAUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.006876 +CELF2 ENSG00000048740 no Homo_sapiens GUCUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.006876 +CELF2 ENSG00000048740 no Homo_sapiens GUGUG 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.004487 +CELF2 ENSG00000048740 no Homo_sapiens GUGUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.020491 +CELF2 ENSG00000048740 no Homo_sapiens GUUGU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.008962 +CELF2 ENSG00000048740 no Homo_sapiens GUUGUU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.015184 +CELF2 ENSG00000048740 no Homo_sapiens UAUGU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.010751 +CELF2 ENSG00000048740 no Homo_sapiens UAUGUG 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.001592 +CELF2 ENSG00000048740 no Homo_sapiens UAUGUU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.006344 +CELF2 ENSG00000048740 no Homo_sapiens UGUGU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.026796 +CELF2 ENSG00000048740 no Homo_sapiens UGUGU 5 UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts. S 11931771 UV cross-linking RRM 602 1.000000** +CELF2 ENSG00000048740 no Homo_sapiens UGUGUG 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.001592 +CELF2 ENSG00000048740 no Homo_sapiens UGUU 4 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION RRM 365 1.000000** +CELF2 ENSG00000048740 no Homo_sapiens UGUUC 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.006749 +CELF2 ENSG00000048740 no Homo_sapiens UGUUG 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.026796 +CELF2 ENSG00000048740 no Homo_sapiens UGUUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.014251 +CELF2 ENSG00000048740 no Homo_sapiens UGUUU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.046843** +CELF2 ENSG00000048740 no Homo_sapiens UUGUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.025601** +CELF2 ENSG00000048740 no Homo_sapiens UUGUU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.023451 +CELF2 ENSG00000048740 no Homo_sapiens UUGUU 5 UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts. S 11931771 UV cross-linking RRM 603 1.000000** +CELF4 ENSG00000101489 no Homo_sapiens GGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.01602 +CELF4 ENSG00000101489 no Homo_sapiens UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.059537 +CELF4 ENSG00000101489 no Homo_sapiens GGUGUUG 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.007378 +CELF4 ENSG00000101489 no Homo_sapiens UGUGUUG 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.027421 +CELF4 ENSG00000101489 no Homo_sapiens GGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.034471 +CELF4 ENSG00000101489 no Homo_sapiens UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.128111** +CELF4 ENSG00000101489 no Homo_sapiens GGUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.015876 +CELF4 ENSG00000101489 no Homo_sapiens UGUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.059004 +CELF5 ENSG00000161082 no Homo_sapiens UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M157_0.6 0.075544 +CELF5 ENSG00000161082 no Homo_sapiens UGUGUUG 7 RNAcompete C 23846655 RNAcompete RRM M157_0.6 0.025251 +CELF5 ENSG00000161082 no Homo_sapiens UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M157_0.6 0.216831** +CELF5 ENSG00000161082 no Homo_sapiens UGUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M157_0.6 0.072478 +CELF6 ENSG00000140488 no Homo_sapiens UGUGAGG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.049833 +CELF6 ENSG00000140488 no Homo_sapiens UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.094426 +CELF6 ENSG00000140488 no Homo_sapiens UGUGGGG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.098569 +CELF6 ENSG00000140488 no Homo_sapiens UGUGAUG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.051647 +CELF6 ENSG00000140488 no Homo_sapiens UGUGUUG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.097863 +CELF6 ENSG00000140488 no Homo_sapiens UGUGGUG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.102157** +CG11360 FBGN0039920 no Drosophila_melanogaster GAGUAA 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.0522 +CG11360 FBGN0039920 no Drosophila_melanogaster GAGUUA 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.017746 +CG11360 FBGN0039920 no Drosophila_melanogaster GAGUGA 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.015927 +CG11360 FBGN0039920 no Drosophila_melanogaster GAGUAU 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.111162** +CG11360 FBGN0039920 no Drosophila_melanogaster GAGUUU 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.03779 +CG11360 FBGN0039920 no Drosophila_melanogaster GAGUGU 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.033918 +CG2931 FBGN0037342 no Drosophila_melanogaster AACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M138_0.6 0.387564** +CG2931 FBGN0037342 no Drosophila_melanogaster UACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M138_0.6 0.150324 +CG2931 FBGN0037342 no Drosophila_melanogaster GACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M138_0.6 0.145986 +CG33714 FBGN0064117 no Drosophila_melanogaster CCGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.037923 +CG33714 FBGN0064117 no Drosophila_melanogaster UCGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.026492 +CG33714 FBGN0064117 no Drosophila_melanogaster GCGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.048731 +CG33714 FBGN0064117 no Drosophila_melanogaster CUGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.022835 +CG33714 FBGN0064117 no Drosophila_melanogaster UUGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.015952 +CG33714 FBGN0064117 no Drosophila_melanogaster GUGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.029343 +CG33714 FBGN0064117 no Drosophila_melanogaster CGGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.081479 +CG33714 FBGN0064117 no Drosophila_melanogaster UGGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.05692 +CG33714 FBGN0064117 no Drosophila_melanogaster GGGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.104703** +CG5213 FBGN0038345 no Drosophila_melanogaster UACUUU 6 RNAcompete C 23846655 RNAcompete RRM M010_0.6 0.586819** +CG5213 FBGN0038345 no Drosophila_melanogaster UGCUUU 6 RNAcompete C 23846655 RNAcompete RRM M010_0.6 0.206303 +CG7804 FBGN0036496 no Drosophila_melanogaster AGGAUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.013181 +CG7804 FBGN0036496 no Drosophila_melanogaster UGGAUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.004157 +CG7804 FBGN0036496 no Drosophila_melanogaster AGUAUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.014954 +CG7804 FBGN0036496 no Drosophila_melanogaster UGUAUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.004716 +CG7804 FBGN0036496 no Drosophila_melanogaster AGGGUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.027421 +CG7804 FBGN0036496 no Drosophila_melanogaster UGGGUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.008647 +CG7804 FBGN0036496 no Drosophila_melanogaster AGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.031109 +CG7804 FBGN0036496 no Drosophila_melanogaster UGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.00981 +CG7804 FBGN0036496 no Drosophila_melanogaster AGGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.025259 +CG7804 FBGN0036496 no Drosophila_melanogaster UGGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.007965 +CG7804 FBGN0036496 no Drosophila_melanogaster AGUAUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.028656 +CG7804 FBGN0036496 no Drosophila_melanogaster UGUAUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.009037 +CG7804 FBGN0036496 no Drosophila_melanogaster AGGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.052545 +CG7804 FBGN0036496 no Drosophila_melanogaster UGGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.01657 +CG7804 FBGN0036496 no Drosophila_melanogaster AGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.059613** +CG7804 FBGN0036496 no Drosophila_melanogaster UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.018798 +CG7903 FBGN0039730 no Drosophila_melanogaster AAUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.017944 +CG7903 FBGN0039730 no Drosophila_melanogaster UAUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.036041 +CG7903 FBGN0039730 no Drosophila_melanogaster CAUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.036119 +CG7903 FBGN0039730 no Drosophila_melanogaster AUUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.021571 +CG7903 FBGN0039730 no Drosophila_melanogaster UUUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.043326 +CG7903 FBGN0039730 no Drosophila_melanogaster CUUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.04342 +CG7903 FBGN0039730 no Drosophila_melanogaster AAUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.048427 +CG7903 FBGN0039730 no Drosophila_melanogaster UAUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.097265 +CG7903 FBGN0039730 no Drosophila_melanogaster CAUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.097477 +CG7903 FBGN0039730 no Drosophila_melanogaster AUUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.058215 +CG7903 FBGN0039730 no Drosophila_melanogaster UUUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.116926 +CG7903 FBGN0039730 no Drosophila_melanogaster CUUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.117180** +CMTR1 ENSG00000137200 no Homo_sapiens GAUC 4 X-RAY DIFFRACTION PDB 24402442 X-RAY DIFFRACTION FTSJ;G-PATCH 427 1.000000** +CNOT4 ENSG00000080802 no Homo_sapiens GACAGA 6 RNAcompete C 23846655 RNAcompete RRM M147_0.6 0.569645** +CNOT4 FBGN0051716 no Drosophila_melanogaster ACACAAA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.118642 +CNOT4 FBGN0051716 no Drosophila_melanogaster AGACAAA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.036101 +CNOT4 FBGN0051716 no Drosophila_melanogaster ACACAUA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.163154** +CNOT4 FBGN0051716 no Drosophila_melanogaster AGACAUA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.049645 +CNOT4 FBGN0051716 no Drosophila_melanogaster ACACACA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.081001 +CNOT4 FBGN0051716 no Drosophila_melanogaster AGACACA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.024647 +CNOT4 FBGN0051716 no Drosophila_melanogaster ACACAAU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.030646 +CNOT4 FBGN0051716 no Drosophila_melanogaster AGACAAU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.009325 +CNOT4 FBGN0051716 no Drosophila_melanogaster ACACAUU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.042143 +CNOT4 FBGN0051716 no Drosophila_melanogaster AGACAUU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.012824 +CNOT4 FBGN0051716 no Drosophila_melanogaster ACACACU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.020923 +CNOT4 FBGN0051716 no Drosophila_melanogaster AGACACU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.006367 +CPEB1 ENSG00000214575 no Homo_sapiens UUUUA 5 SOLUTION NMR PDB 24990967 SOLUTION NMR RRM 333 1.000000** +CPEB1-A XB-GENE-946172 no Xenopus_laevis UUUUAU 6 EMSA R 8665866 EMSA RRM 34 1.000000** +CPEB1-A XB-GENE-946172 no Xenopus_laevis UUUUUAAU 8 UV cross-linking R 1653174 UV cross-linking RRM 160 1.000000** +CPEB1-A XB-GENE-946172 no Xenopus_laevis UUUUUUAUAAAG 12 UV cross-linking R 2145153 UV cross-linking RRM 108 1.000000** +CPEB2 ENSG00000137449 no Homo_sapiens CAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M012_0.6 0.125733 +CPEB2 ENSG00000137449 no Homo_sapiens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M012_0.6 0.224637** +CPEB2 ENSG00000137449 no Homo_sapiens CCUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M012_0.6 0.098877 +CPEB4 ENSG00000113742 no Homo_sapiens CUUUA 5 SOLUTION NMR PDB 24990967 SOLUTION NMR RRM 345 1.000000** +CPEB4 ENSG00000113742 no Homo_sapiens UUUUUU 6 RNAcompete C 23846655 RNAcompete RRM M149_0.6 0.654996** +CPO FBGN0263995 no Drosophila_melanogaster AGCACA 6 RNAcompete C 23846655 RNAcompete RRM M125_0.6 0.271333 +CPO FBGN0263995 no Drosophila_melanogaster UGCACA 6 RNAcompete C 23846655 RNAcompete RRM M125_0.6 0.338434** +CSTF2 ENSG00000101811 no Homo_sapiens GUGUGUGUUG 10 NMR R 12773396 NMR RRM 60 1.000000** +CSTF2 ENSG00000101811 no Homo_sapiens GUGUGUGUUUG 11 NMR R 12773396 NMR RRM 162 1.000000** +CSTF2 ENSG00000101811 no Homo_sapiens GUGUGUGUUUUG 12 NMR R 12773396 NMR RRM 112 1.000000** +CSTF2 ENSG00000101811 no Homo_sapiens UGUGUGUU 8 NMR R 12773396 NMR RRM 19 1.000000** +CTHT_0057680 GL988045 no Chaetomium_thermophilum AAAA 4 X-RAY DIFFRACTION PDB 24071581 X-RAY DIFFRACTION N\A 351 1.000000** +C_SCAFFOLD_4000008 C_SCAFFOLD_4000008 no Phytophthora_ramorum UUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M213_0.6 0.278339** +C_SCAFFOLD_4000008 C_SCAFFOLD_4000008 no Phytophthora_ramorum UUGCACU 7 RNAcompete C 23846655 RNAcompete RRM M213_0.6 0.128859 +C_SCAFFOLD_4000008 C_SCAFFOLD_4000008 no Phytophthora_ramorum UUGCACG 7 RNAcompete C 23846655 RNAcompete RRM M213_0.6 0.213333 +DAZAP1 ENSG00000071626 no Homo_sapiens AAAAAAA 7 In vitro RNA-binding assay of Homopolymers and SDS-PAGE with recombinant protein. S 10857750 other RRM 594 1.000000** +DAZAP1 ENSG00000071626 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 598 1.000000** +DAZAP1 ENSG00000071626 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 597 1.000000** +DAZAP1 ENSG00000071626 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 599 1.000000** +DAZAP1 ENSG00000071626 no Homo_sapiens GGGGGGG 7 In vitro RNA-binding assay of Homopolymers and SDS-PAGE with recombinant protein. S 10857750 other RRM 595 1.000000** +DAZAP1 ENSG00000071626 no Homo_sapiens GUAACG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 600 1.000000** +DAZAP1 ENSG00000071626 no Homo_sapiens UAGGAAA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.027424 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGUAAA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.008178 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGGUAA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.09326 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGUUAA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.02781 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGGAUA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.008117 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGUAUA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.00242 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGGUUA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.027602 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGUUUA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.008231 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGGAAG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.044268 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGUAAG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.013201 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGGUAG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.150540** +DAZAP1 ENSG00000071626 no Homo_sapiens UAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.044891 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGGAUG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.013102 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGUAUG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.003907 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGGUUG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.044556 +DAZAP1 ENSG00000071626 no Homo_sapiens UAGUUUG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.013286 +DAZAP1 ENSG00000071626 no Homo_sapiens UUUUUUU 7 In vitro RNA-binding assay of Homopolymers and SDS-PAGE with recombinant protein. S 10857750 other RRM 596 1.000000** +DAZAP1 ENSG00000071626 yes Homo_sapiens AGAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA RRM 593 1.000000** +DAZL ENSMUSG00000010592 no Mus_musculus GUUC 4 X-RAY DIFFRACTION PDB 22021443 X-RAY DIFFRACTION RRM 357 1.000000** +DAZL ENSMUSG00000010592 no Mus_musculus GUUCU 5 X-RAY DIFFRACTION PDB 22021443 X-RAY DIFFRACTION RRM 558 1.000000** +DAZL ENSMUSG00000010592 no Mus_musculus UGUUC 5 X-RAY DIFFRACTION PDB 22021443 X-RAY DIFFRACTION RRM 348 1.000000** +DBP5 YOR046C no Saccharomyces_cerevisiae UUUUUU 6 X-RAY DIFFRACTION PDB 21441902 X-RAY DIFFRACTION DEAD;HELICASE_C 466 1.000000** +DDX19B ENSG00000157349 no Homo_sapiens UUUUUU 6 X-RAY DIFFRACTION PDB 19219046 X-RAY DIFFRACTION DEAD;HELICASE_C 554 1.000000** +DDX19B ENSG00000157349 no Homo_sapiens UUUUUUU 7 X-RAY DIFFRACTION PDB 19244245 X-RAY DIFFRACTION DEAD;HELICASE_C 332 1.000000** +DDX58 ENSG00000107201 no Homo_sapiens CGUCG 5 X-RAY DIFFRACTION PDB 21947008 X-RAY DIFFRACTION DEAD;HELICASE_C;RIG_I_C 511 1.000000** +DDX58 ENSG00000107201 no Homo_sapiens GCGCGC 6 X-RAY DIFFRACTION PDB 22000018 X-RAY DIFFRACTION DEAD 473 1.000000** +DDX58 ENSG00000107201 no Homo_sapiens GGCG 4 X-RAY DIFFRACTION PDB 20961956 X-RAY DIFFRACTION DEAD 381 1.000000** +DHX58 ENSG00000108771 no Homo_sapiens GCGCG 5 X-RAY DIFFRACTION PDB 19278996 X-RAY DIFFRACTION HELICASE_C;RIG-I_C-RD;RESIII 422 1.000000** +DHX9 ENSG00000135829 no Homo_sapiens CGCG 4 X-RAY DIFFRACTION PDB 23361462 X-RAY DIFFRACTION DEAD;DSRM;HA2;HELICASE_C;OB_NTP_BIND 377 1.000000** +DHX9 ENSG00000135829 no Homo_sapiens GCGC 4 X-RAY DIFFRACTION PDB 23361462 X-RAY DIFFRACTION DEAD;DSRM;HA2;HELICASE_C;OB_NTP_BIND 458 1.000000** +DHX9 ENSG00000135829 no Homo_sapiens GCGCG 5 X-RAY DIFFRACTION PDB 23361462 X-RAY DIFFRACTION DEAD;DSRM;HA2;HELICASE_C;OB_NTP_BIND 435 1.000000** +DIS3 YOL021C no Saccharomyces_cerevisiae AAAAAAAAA 9 X-RAY DIFFRACTION PDB 18374646 X-RAY DIFFRACTION PIN 355 1.000000** +DIS3 YOL021C no Saccharomyces_cerevisiae UUUUUUU 7 X-RAY DIFFRACTION PDB 23376952 X-RAY DIFFRACTION PIN 488 1.000000** +DRB1 AT1G09700 no Arabidopsis_thaliana CGAG 4 X-RAY DIFFRACTION PDB 20462493 X-RAY DIFFRACTION DSRM 532 1.000000** +DRBD10 LMJF.35.2550 no Leishmania_major AGAACGA 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.150034** +DRBD10 LMJF.35.2550 no Leishmania_major UGAACGA 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.128034 +DRBD10 LMJF.35.2550 no Leishmania_major CGAACGA 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.07626 +DRBD10 LMJF.35.2550 no Leishmania_major AGAACGC 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.137404 +DRBD10 LMJF.35.2550 no Leishmania_major UGAACGC 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.117256 +DRBD10 LMJF.35.2550 no Leishmania_major CGAACGC 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.069841 +EIF-2ALPHA FBGN0261609 no Drosophila_melanogaster AGCAUG 6 RNAcompete C 23846655 RNAcompete S1 M231_0.6 0.412365** +EIF-2ALPHA FBGN0261609 no Drosophila_melanogaster UGCAUG 6 RNAcompete C 23846655 RNAcompete S1 M231_0.6 0.373868 +EIF4A3 ENSG00000141543 no Homo_sapiens UUUUUU 6 X-RAY DIFFRACTION PDB 16923391 X-RAY DIFFRACTION DEAD;HELICASE_C 407 1.000000** +EIF4A3 ENSG00000141543 no Homo_sapiens UUUUUU 6 X-RAY DIFFRACTION PDB 16931718 X-RAY DIFFRACTION DEAD;HELICASE_C 432 1.000000** +EIF4A3 ENSG00000141543 no Homo_sapiens UUUUUU 6 X-RAY DIFFRACTION PDB 19033377 X-RAY DIFFRACTION DEAD;HELICASE_C 426 1.000000** +EIF4B ENSG00000063046 no Homo_sapiens CUCGGAA 7 SELEX C 8846295 SELEX RRM M290_0.6 0.021854 +EIF4B ENSG00000063046 no Homo_sapiens GUCGGAA 7 SELEX C 8846295 SELEX RRM M290_0.6 0.076488 +EIF4B ENSG00000063046 no Homo_sapiens CUUGGAA 7 SELEX C 8846295 SELEX RRM M290_0.6 0.03207 +EIF4B ENSG00000063046 no Homo_sapiens GUUGGAA 7 SELEX C 8846295 SELEX RRM M290_0.6 0.112246** +EIF4B ENSG00000063046 no Homo_sapiens CUCGGAC 7 SELEX C 8846295 SELEX RRM M290_0.6 0.007391 +EIF4B ENSG00000063046 no Homo_sapiens GUCGGAC 7 SELEX C 8846295 SELEX RRM M290_0.6 0.02587 +EIF4B ENSG00000063046 no Homo_sapiens CUUGGAC 7 SELEX C 8846295 SELEX RRM M290_0.6 0.010847 +EIF4B ENSG00000063046 no Homo_sapiens GUUGGAC 7 SELEX C 8846295 SELEX RRM M290_0.6 0.037964 +ELAV FBGN0260400 no Drosophila_melanogaster UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.03309 +ELAV FBGN0260400 no Drosophila_melanogaster UUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.060601 +ELAV FBGN0260400 no Drosophila_melanogaster UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.102818 +ELAV FBGN0260400 no Drosophila_melanogaster UUUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.061764 +ELAV FBGN0260400 no Drosophila_melanogaster UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.113113 +ELAV FBGN0260400 no Drosophila_melanogaster UUUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.191912** +ELAVL1 ENSG00000066044 no Homo_sapiens AUUU 4 X-RAY DIFFRACTION PDB 23519412 X-RAY DIFFRACTION RRM 512 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens AUUUA 5 UV crosslink, immunoblotting with HeLa nuclear extracts, EMSA with recombinant protein. S 9882309 UV cross-linking;EMSA RRM 1103 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens AUUUAUUUAUUU 12 EMSA R 12900401 EMSA RRM 164 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens AUUUU 5 X-RAY DIFFRACTION PDB 23519412 X-RAY DIFFRACTION RRM 476 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens CCCCCCC 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH RRM 1107 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens UUAUUUAUU 9 EMSA supershift, mutation analysis S 10075998 EMSA;other RRM 1105 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens UUAUUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.119681 +ELAVL1 ENSG00000066044 no Homo_sapiens UUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M031_0.6 0.253225** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M031_0.6 0.132086 +ELAVL1 ENSG00000066044 no Homo_sapiens UUGUUUU 7 RNAcompete C 23846655 RNAcompete RRM M031_0.6 0.08368 +ELAVL1 ENSG00000066044 no Homo_sapiens UUGUUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.119681 +ELAVL1 ENSG00000066044 no Homo_sapiens UUGAUUU 7 RNAcompete C 23846655 RNAcompete RRM M127_0.6 0.098815 +ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M127_0.6 0.046409 +ELAVL1 ENSG00000066044 no Homo_sapiens UUGGUUU 7 RNAcompete C 23846655 RNAcompete RRM M127_0.6 0.200648** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M127_0.6 0.094234 +ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.119681 +ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUUAUUU 11 EMSA R 12900401 EMSA RRM 84 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUUAUUUA 12 EMSA R 12900401 EMSA RRM 161 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUGUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.119681 +ELAVL1 ENSG00000066044 no Homo_sapiens UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M112_0.6 0.022197 +ELAVL1 ENSG00000066044 no Homo_sapiens UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M112_0.6 0.071652 +ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M112_0.6 0.052186 +ELAVL1 ENSG00000066044 no Homo_sapiens UUUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M112_0.6 0.168455** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUU 4 X-RAY DIFFRACTION PDB 23519412 X-RAY DIFFRACTION RRM 367 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUUU 5 UV crosslink, immunoblotting with HeLa nuclear extracts, EMSA with recombinant protein. S 9882309 UV cross-linking;EMSA RRM 1104 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M232_0.6 0.073589 +ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M232_0.6 0.260316** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.356674** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH RRM 1108 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 UV crosslink, immunoblotting with HeLa nuclear extracts, EMSA with recombinant protein. S 9882309 UV cross-linking;EMSA RRM 1106 1.000000** +ELAVL1 ENSG00000066044 no Homo_sapiens UUAGUUU 7 RNAcompete C 23846655 RNAcompete RRM M108_0.6 0.077242 +ELAVL1 ENSG00000066044 no Homo_sapiens UUUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M108_0.6 0.223945** +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUA 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.182805** +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUACUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.004824 +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUAUACU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.00033 +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUAUAUA 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001909 +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.045622 +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUC 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.182805** +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUG 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.06134 +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUC 6 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s2 0.124381** +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUUA 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.238178** +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUUC 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.07992 +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUUUUA 9 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s0 0.000557 +ELAVL2 ENSG00000107105 no Homo_sapiens CUUUA 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.122072 +ELAVL2 ENSG00000107105 no Homo_sapiens CUUUAAUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.002898 +ELAVL2 ENSG00000107105 no Homo_sapiens CUUUC 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.122072 +ELAVL2 ENSG00000107105 no Homo_sapiens CUUUCUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.000803 +ELAVL2 ENSG00000107105 no Homo_sapiens CUUUUA 6 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s2 0.124381** +ELAVL2 ENSG00000107105 no Homo_sapiens CUUUUU 6 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s2 0.124381** +ELAVL2 ENSG00000107105 no Homo_sapiens CUUUUUA 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.238178** +ELAVL2 ENSG00000107105 no Homo_sapiens CUUUUUG 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.07992 +ELAVL2 ENSG00000107105 no Homo_sapiens GAAA 4 SELEX R 8668530 SELEX RRM 96 1.000000** +ELAVL2 ENSG00000107105 no Homo_sapiens GUUUA 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.122072 +ELAVL2 ENSG00000107105 no Homo_sapiens GUUUC 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.122072 +ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUC 6 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s2 0.124381** +ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUUA 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.119681 +ELAVL2 ENSG00000107105 no Homo_sapiens AAUUUAUUUAA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens GAUUUAUUUAA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUAUUUAA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUAUUUAA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens AAUUUAUUUUA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens GAUUUAUUUUA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUAUUUUA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUAUUUUA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens AAUUUAUUUAG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens GAUUUAUUUAG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUAUUUAG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUAUUUAG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens AAUUUAUUUUG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens GAUUUAUUUUG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUAUUUUG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUAUUUUG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** +ELAVL2 ENSG00000107105 no Homo_sapiens UAUUAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.007199 +ELAVL2 ENSG00000107105 no Homo_sapiens UCUUAUAUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001083 +ELAVL2 ENSG00000107105 no Homo_sapiens UUAUACUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001584 +ELAVL2 ENSG00000107105 no Homo_sapiens UUAUAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.014977 +ELAVL2 ENSG00000107105 no Homo_sapiens UUGUAUUGU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001078 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUAAUUUG 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001751 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUAAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.01569 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUCAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.007884 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUGAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.007884 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAAGUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.002608 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAAUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.025968 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAGUUA 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.002424 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUGUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.016474 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUGA 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.006536 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUGU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.023496 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUUA 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.045622 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUUG 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.018304 +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.164003** +ELAVL2 ENSG00000107105 no Homo_sapiens UUUUUUAUUUU 11 UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts. S 17035636 UV cross-linking;EMSA;other RRM 1093 1.000000** +ELAVL3 ENSG00000196361 no Homo_sapiens AUUUA 5 NMR R 10734193 NMR RRM 85 1.000000** +ELAVL3 ENSG00000196361 no Homo_sapiens AUUUAUUUUA 10 NMR R 10734193 NMR RRM 119 1.000000** +ELAVL3 ENSG00000196361 no Homo_sapiens UAUUUAUUUU 10 NMR R 10734193 NMR RRM 47 1.000000** +ELAVL3 ENSMUSG00000003410 no Homo_sapiens UUUUUUU 7 ELISA and competition assays with recombinant protein S 10710437 other RRM 1094 1.000000** +ELAVL3 ENSMUSG00000003410 no Mus_musculus AUUUAUUUU 9 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 567 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with HeLa cell extracts S 12384599 other RRM 1099 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens AUUU 4 X-RAY DIFFRACTION PDB 11175903 X-RAY DIFFRACTION RRM 424 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens AUUUAUUUAUUU 12 EMSA with recombinant protein S 12900401 EMSA RRM 1101 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens UAUUUAUUUA 10 X-RAY DIFFRACTION PDB 11175903 X-RAY DIFFRACTION RRM 353 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens UUAUUUAUUU 10 EMSA with recombinant protein S 10848602 EMSA RRM 1097 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens UUUAUUUAUUU 11 EMSA with recombinant protein S 12900401 EMSA RRM 1102 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens UUUAUUUAUUUA 12 EMSA with recombinant protein S 12900401 EMSA RRM 1100 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens UUUGUAUCUAAU 12 SELEX of 13nt random with recombinant protein. S 12900401 SELEX RRM s93 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens UUUUUUAUUUU 11 UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts. S 17035636 UV cross-linking;EMSA;other RRM 1095 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens UUUUUUU 7 ELISA and competition assays with recombinant protein S 10710437 other RRM 1096 1.000000** +ELAVL4 ENSG00000162374 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with HeLa cell extracts S 12384599 other RRM 1098 1.000000** +EMG1 YLR186W no Saccharomyces_cerevisiae CAACGC 6 X-RAY DIFFRACTION PDB 21087996 X-RAY DIFFRACTION EMG1 390 1.000000** +EMG1 YLR186W no Saccharomyces_cerevisiae CUUC 4 X-RAY DIFFRACTION PDB 21087996 X-RAY DIFFRACTION EMG1 544 1.000000** +EMG1 YLR186W no Saccharomyces_cerevisiae UCAACG 6 X-RAY DIFFRACTION PDB 21087996 X-RAY DIFFRACTION EMG1 571 1.000000** +EMG1 YLR186W no Saccharomyces_cerevisiae UUCAACG 7 X-RAY DIFFRACTION PDB 21087996 X-RAY DIFFRACTION EMG1 386 1.000000** +ENOX1 ENSG00000120658 no Homo_sapiens AAGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.07275 +ENOX1 ENSG00000120658 no Homo_sapiens UAGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.032167 +ENOX1 ENSG00000120658 no Homo_sapiens CAGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.092750** +ENOX1 ENSG00000120658 no Homo_sapiens AGGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.028178 +ENOX1 ENSG00000120658 no Homo_sapiens UGGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.012459 +ENOX1 ENSG00000120658 no Homo_sapiens CGGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.035924 +ENOX1 ENSG00000120658 no Homo_sapiens AAUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.022019 +ENOX1 ENSG00000120658 no Homo_sapiens UAUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.009736 +ENOX1 ENSG00000120658 no Homo_sapiens CAUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.028073 +ENOX1 ENSG00000120658 no Homo_sapiens AGUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.008529 +ENOX1 ENSG00000120658 no Homo_sapiens UGUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.003771 +ENOX1 ENSG00000120658 no Homo_sapiens CGUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.010873 +ERI1 ENSG00000104626 no Homo_sapiens AGCC 4 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION SAP;RNASE_T 412 1.000000** +ERI1 ENSG00000104626 no Homo_sapiens UUUCAGA 7 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION SAP;RNASE_T 517 1.000000** +ESRP1 ENSG00000104413 no Homo_sapiens AGGGAU 6 NMR spectroscopy S 20526337 SOLUTION NMR RRM 601 1.000000** +ESRP2 ENSG00000103067 no Homo_sapiens UGGGAAA 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.021444 +ESRP2 ENSG00000103067 no Homo_sapiens UGGGGAA 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.069077 +ESRP2 ENSG00000103067 no Homo_sapiens UGGGAAU 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.050884 +ESRP2 ENSG00000103067 no Homo_sapiens UGGGGAU 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.163913** +ESRP2 ENSG00000103067 no Homo_sapiens UGGGAAG 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.020506 +ESRP2 ENSG00000103067 no Homo_sapiens UGGGGAG 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.066056 +ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi AAUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.305845** +ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi GAUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.102315 +ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi AUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.094712 +ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi GUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.031684 +ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi AGUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.099556 +ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi GGUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.033305 +ESTEXT_GWP_GW1.C_700168 ESTEXT_GWP_GW1.C_700168 no Physcomitrella_patens AUGGAG 6 RNAcompete C 23846655 RNAcompete N\A M205_0.6 0.415919** +ESTEXT_GWP_GW1.C_700168 ESTEXT_GWP_GW1.C_700168 no Physcomitrella_patens UUGGAG 6 RNAcompete C 23846655 RNAcompete N\A M205_0.6 0.18767 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans GGUAUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.015273 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans UGUAUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.019203 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans GUUAUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.031049 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans UUUAUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.039039 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans GGUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.029919 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans UGUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.037618 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans GUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.060825 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.076476 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans GGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.039236 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.049333 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans GUUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.079767 +ETR-1 WBGENE00001340 no Caenorhabditis_elegans UUUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.100292** +EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUAAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.067431 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUAAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.245377** +EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.020332 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.073987 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUGAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.020705 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUGAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.075344 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUAGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.019318 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUAGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.070295 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.005825 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.021196 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUGGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.005932 +EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUGGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.021584 +E_GW1.03.00.367.1 E_GW1.03.00.367.1 no Ostreococcus_tauri UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M224_0.6 0.120664 +E_GW1.03.00.367.1 E_GW1.03.00.367.1 no Ostreococcus_tauri UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M224_0.6 0.265723** +E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACAA 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.199775** +E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACGA 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.078858 +E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACAU 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.096375 +E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACGU 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.038042 +E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACAG 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.188218 +E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACGG 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.074296 +E_GW1.81.40.1 E_GW1.81.40.1 no Physcomitrella_patens AACCUA 6 RNAcompete C 23846655 RNAcompete N\A M185_0.6 0.077014 +E_GW1.81.40.1 E_GW1.81.40.1 no Physcomitrella_patens GACCUA 6 RNAcompete C 23846655 RNAcompete N\A M185_0.6 0.025426 +E_GW1.81.40.1 E_GW1.81.40.1 no Physcomitrella_patens AACCUU 6 RNAcompete C 23846655 RNAcompete N\A M185_0.6 0.221552** +E_GW1.81.40.1 E_GW1.81.40.1 no Physcomitrella_patens GACCUU 6 RNAcompete C 23846655 RNAcompete N\A M185_0.6 0.073145 +F2 ENSG00000180210 no Homo_sapiens GAAG 4 X-RAY DIFFRACTION PDB 18971322 X-RAY DIFFRACTION GLA;KRINGLE;THROMBIN_LIGHT;TRYPSIN 366 1.000000** +FBF-1 WBGENE00001401 no Caenorhabditis_elegans UGUGUAUAUA 10 EMSA R 19146813 EMSA PUF 77 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans AUAC 4 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION PUF 580 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans CAUGUGC 7 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION PUF 392 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans CUGUGC 6 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION PUF 371 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAA 5 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 356 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAAAAUC 9 EMSA R 19901328 EMSA PUF 35 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAAUAUA 9 EMSA R 19901328 EMSA PUF 102 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACAAUA 9 EMSA R 19901328 EMSA PUF 69 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACCAUA 9 EMSA R 19901328 EMSA PUF 14 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACCAUA 9 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 451 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACUAUA 9 EMSA R 19901328 EMSA PUF 44 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACUAUA 9 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 336 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAAAAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAUAAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACAAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAAUAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAUUAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACUAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAACAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAUCAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACCAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGC 5 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 565 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGC 5 X-RAY DIFFRACTION PDB 21372189 X-RAY DIFFRACTION PUF 409 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGCCAUA 9 EMSA R 19901328 EMSA PUF 30 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGCCUUA 9 X-RAY DIFFRACTION PDB 21372189 X-RAY DIFFRACTION PUF 431 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUCAUA 9 EMSA R 19901328 EMSA PUF 56 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUCAUC 9 EMSA R 19901328 EMSA PUF 145 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUCAUU 9 EMSA R 19901328 EMSA PUF 140 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUCAUU 9 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 443 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUUAUC 9 EMSA R 19901328 EMSA PUF 68 1.000000** +FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUUAUC 9 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 520 1.000000** +FMR1 ENSG00000102081 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 607 1.000000** +FMR1 ENSG00000102081 no Homo_sapiens AAGCGGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.074408 +FMR1 ENSG00000102081 no Homo_sapiens GAGCGAAGGGAG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.001319 +FMR1 ENSG00000102081 no Homo_sapiens GAGCGACUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.059409 +FMR1 ENSG00000102081 no Homo_sapiens GAGCGACUGGUG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000065 +FMR1 ENSG00000102081 no Homo_sapiens GAGCGGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.148079 +FMR1 ENSG00000102081 no Homo_sapiens GCUGC 5 SOLUTION NMR PDB 21642970 SOLUTION NMR KH;FXR1P;AGENET 450 1.000000** +FMR1 ENSG00000102081 no Homo_sapiens GGACUAAGGAGU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.001006 +FMR1 ENSG00000102081 no Homo_sapiens GGGCAUAGGCAC 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000011 +FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAAG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.010506 +FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAGU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.015119** +FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGGAG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.006571 +FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAAG 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** +FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAAG 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** +FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAGG 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** +FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAGG 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** +FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAAU 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** +FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAAU 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** +FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAGU 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** +FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAGU 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** +FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAAU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.010805 +FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAGU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.012962 +FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAUU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.006492 +FMR1 ENSG00000102081 no Homo_sapiens GGGCUAUGGAGU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.001308 +FMR1 ENSG00000102081 no Homo_sapiens GGGCUGAGGAUG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000988 +FMR1 ENSG00000102081 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay using recombinant protein S 11046149 other KH 608 1.000000** +FMR1 ENSG00000102081 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein S 12745094 other KH 610 1.000000** +FMR1 ENSG00000102081 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein S 7688265 other KH 604 1.000000** +FMR1 ENSG00000102081 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 606 1.000000** +FMR1 ENSG00000102081 no Homo_sapiens GUGCGACUGGGC 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000078 +FMR1 ENSG00000102081 no Homo_sapiens GUGCGGCUGGGC 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000014 +FMR1 ENSG00000102081 no Homo_sapiens GAGCGACUGG 10 SELEX C 15805463 SELEX KH;FXR1P;AGENET 91 0.247531** +FMR1 ENSG00000102081 no Homo_sapiens UAGCGACUGG 10 SELEX C 15805463 SELEX KH;FXR1P;AGENET 91 0.247531** +FMR1 ENSG00000102081 no Homo_sapiens GAGCGGCUGG 10 SELEX C 15805463 SELEX KH;FXR1P;AGENET 91 0.247531** +FMR1 ENSG00000102081 no Homo_sapiens UAGCGGCUGG 10 SELEX C 15805463 SELEX KH;FXR1P;AGENET 91 0.247531** +FMR1 ENSG00000102081 no Homo_sapiens GGACAAG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M016_0.6 0.145851** +FMR1 ENSG00000102081 no Homo_sapiens UGACAAG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M016_0.6 0.051135 +FMR1 ENSG00000102081 no Homo_sapiens GGACAGG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M016_0.6 0.121827 +FMR1 ENSG00000102081 no Homo_sapiens UGACAGG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M016_0.6 0.042713 +FMR1 ENSG00000102081 no Homo_sapiens UAGCAGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.049646 +FMR1 ENSG00000102081 no Homo_sapiens UAGCGACUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.118522 +FMR1 ENSG00000102081 no Homo_sapiens UAGCGGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.295420** +FMR1 ENSG00000102081 no Homo_sapiens UAGUGGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.049646 +FMR1 ENSG00000102081 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay using recombinant protein S 11046149 other KH 609 1.000000** +FMR1 ENSG00000102081 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein S 12745094 other KH 611 1.000000** +FMR1 ENSG00000102081 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein S 7688265 other KH 605 1.000000** +FMR1 FBGN0028734 no Drosophila_melanogaster AAGGACA 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.04077 +FMR1 FBGN0028734 no Drosophila_melanogaster AUGGACA 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.060264 +FMR1 FBGN0028734 no Drosophila_melanogaster ACGGACA 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.077375** +FMR1 FBGN0028734 no Drosophila_melanogaster AAGGACG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.01633 +FMR1 FBGN0028734 no Drosophila_melanogaster AUGGACG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.024139 +FMR1 FBGN0028734 no Drosophila_melanogaster ACGGACG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.030993 +FNE FBGN0086675 no Drosophila_melanogaster UUGAGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.073401 +FNE FBGN0086675 no Drosophila_melanogaster UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.148661** +FNE FBGN0086675 no Drosophila_melanogaster UUGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.040306 +FNE FBGN0086675 no Drosophila_melanogaster UUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.081633 +FNE FBGN0086675 no Drosophila_melanogaster UUGGGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.062631 +FNE FBGN0086675 no Drosophila_melanogaster UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.12685 +FOX-1 WBGENE00001484 no Caenorhabditis_elegans AGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M017_0.6 0.12105 +FOX-1 WBGENE00001484 no Caenorhabditis_elegans UGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M017_0.6 0.242632** +FOX-1 WBGENE00001484 no Caenorhabditis_elegans AGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M017_0.6 0.116244 +FOX-1 WBGENE00001484 no Caenorhabditis_elegans UGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M017_0.6 0.232998 +FRP ENSOCUG00000015960 no Oryctolagus_cuniculus AGUGCC 6 X-RAY DIFFRACTION PDB 22119729 X-RAY DIFFRACTION ACONITASE 429 1.000000** +FRP ENSOCUG00000015960 no Oryctolagus_cuniculus AGUGUU 6 X-RAY DIFFRACTION PDB 17185597 X-RAY DIFFRACTION ACONITASE 537 1.000000** +FRP ENSOCUG00000015960 no Oryctolagus_cuniculus AUAAUC 6 X-RAY DIFFRACTION PDB 22119729 X-RAY DIFFRACTION ACONITASE 405 1.000000** +FRP ENSOCUG00000015960 no Oryctolagus_cuniculus AUCGG 5 X-RAY DIFFRACTION PDB 22119729 X-RAY DIFFRACTION ACONITASE 341 1.000000** +FRP ENSOCUG00000015960 no Oryctolagus_cuniculus CGGAA 5 X-RAY DIFFRACTION PDB 17185597 X-RAY DIFFRACTION ACONITASE 378 1.000000** +FUS ENSG00000089280 no Homo_sapiens AAAAAAA 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM 1058 1.000000** +FUS ENSG00000089280 no Homo_sapiens CGGUGA 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.074033 +FUS ENSG00000089280 no Homo_sapiens CGGUGG 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.074033 +FUS ENSG00000089280 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM 1059 1.000000** +FUS ENSG00000089280 no Homo_sapiens GGGGGGG 7 SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 UV cross-linking;EMSA RRM 1060 1.000000** +FUS ENSG00000089280 no Homo_sapiens GGGUGA 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.147698** +FUS ENSG00000089280 no Homo_sapiens GGGUGC 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.04956 +FUS ENSG00000089280 no Homo_sapiens GGGUGG 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.147698** +FUS ENSG00000089280 no Homo_sapiens GGGUGU 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.098629 +FUS ENSG00000089280 no Homo_sapiens GGUG 4 SELEX C 11098054 SELEX ZF_RANBP;RRM M316_0.6 1.000000** +FUS ENSG00000089280 no Homo_sapiens UGGUGA 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.110865 +FUS ENSG00000089280 no Homo_sapiens UGGUGG 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.110865 +FUS ENSG00000089280 no Homo_sapiens UGGUGU 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.074033 +FUS ENSG00000089280 no Homo_sapiens UUUUUUU 7 SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 UV cross-linking;EMSA RRM 1061 1.000000** +FXR1 ENSG00000114416 no Homo_sapiens ACGACA 6 RNAcompete C 23846655 RNAcompete KH M152_0.6 0.145579 +FXR1 ENSG00000114416 no Homo_sapiens AUGACA 6 RNAcompete C 23846655 RNAcompete KH M152_0.6 0.227677** +FXR1 ENSG00000114416 no Homo_sapiens ACGACG 6 RNAcompete C 23846655 RNAcompete KH M152_0.6 0.094724 +FXR1 ENSG00000114416 no Homo_sapiens AUGACG 6 RNAcompete C 23846655 RNAcompete KH M152_0.6 0.148142 +FXR2 ENSG00000129245 no Homo_sapiens AGACAAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.006455 +FXR2 ENSG00000129245 no Homo_sapiens UGACAAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.006324 +FXR2 ENSG00000129245 no Homo_sapiens GGACAAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.020283 +FXR2 ENSG00000129245 no Homo_sapiens AGACGAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.009475 +FXR2 ENSG00000129245 no Homo_sapiens UGACGAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.009283 +FXR2 ENSG00000129245 no Homo_sapiens GGACGAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.029775 +FXR2 ENSG00000129245 no Homo_sapiens AGACAGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.006831 +FXR2 ENSG00000129245 no Homo_sapiens UGACAGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.006692 +FXR2 ENSG00000129245 no Homo_sapiens GGACAGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.021466 +FXR2 ENSG00000129245 no Homo_sapiens AGACGGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.010028 +FXR2 ENSG00000129245 no Homo_sapiens UGACGGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.009824 +FXR2 ENSG00000129245 no Homo_sapiens GGACGGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.031511 +FXR2 ENSG00000129245 no Homo_sapiens AGACAAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.018591 +FXR2 ENSG00000129245 no Homo_sapiens UGACAAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.018214 +FXR2 ENSG00000129245 no Homo_sapiens GGACAAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.05842 +FXR2 ENSG00000129245 no Homo_sapiens AGACGAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.027291 +FXR2 ENSG00000129245 no Homo_sapiens UGACGAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.026737 +FXR2 ENSG00000129245 no Homo_sapiens GGACGAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.085759 +FXR2 ENSG00000129245 no Homo_sapiens AGACAGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.019675 +FXR2 ENSG00000129245 no Homo_sapiens UGACAGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.019276 +FXR2 ENSG00000129245 no Homo_sapiens GGACAGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.061827 +FXR2 ENSG00000129245 no Homo_sapiens AGACGGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.028883 +FXR2 ENSG00000129245 no Homo_sapiens UGACGGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.028296 +FXR2 ENSG00000129245 no Homo_sapiens GGACGGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.090761** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACACGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCACGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUACGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUACGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCCGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCCGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCCGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCCGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACAGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCAGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUAGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUAGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACACGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCACGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUACGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUACGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCCGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCCGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCCGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCCGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACAGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCAGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUAGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUAGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACACGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCACGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUACGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUACGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCCGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCCGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCCGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCCGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACAGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCAGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUAGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUAGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACACGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCACGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUACGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUACGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCCGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCCGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCCGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCCGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACAGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCAGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUAGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUAGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** +G3BP2 ENSG00000138757 no Homo_sapiens AGGAUAA 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.125844 +G3BP2 ENSG00000138757 no Homo_sapiens AGGAUUA 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.079949 +G3BP2 ENSG00000138757 no Homo_sapiens AGGAUGA 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.194538** +G3BP2 ENSG00000138757 no Homo_sapiens AGGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.058163 +G3BP2 ENSG00000138757 no Homo_sapiens AGGAUUG 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.036951 +G3BP2 ENSG00000138757 no Homo_sapiens AGGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.089913 +GLD-1 WBGENE00001595 no Caenorhabditis_elegans AUCUACUCAUAU 12 isothermal titration calorimetry R 14718919 other KH 150 1.000000** +GLD-1 WBGENE00001595 no Caenorhabditis_elegans CUAAC 5 X-RAY DIFFRACTION PDB 23630077 X-RAY DIFFRACTION KH 374 1.000000** +GLD-1 WBGENE00001595 no Caenorhabditis_elegans CUACUCAUAU 10 SOLUTION NMR PDB 24838563 SOLUTION NMR KH 498 1.000000** +GRSF1 ENSG00000132463 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 other RRM 46 0.110865** +GRSF1 ENSG00000132463 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 other RRM 46 0.110865** +GRSF1 ENSG00000132463 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 other RRM 46 0.110865** +GRSF1 ENSG00000132463 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 other RRM 46 0.110865** +GRSF1 ENSG00000132463 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 other RRM 46 0.110865** +GRSF1 ENSG00000132463 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 other RRM 46 0.110865** +GRSF1 ENSG00000132463 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 other RRM 46 0.110865** +GRSF1 ENSG00000132463 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 other RRM 46 0.110865** +GRSF1 ENSG00000132463 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 other RRM 46 0.110865** +GTF3A XB-GENE-6252591 no Xenopus_laevis CCAUAC 6 SOLUTION NMR PDB 16405997 SOLUTION NMR ZF_C2HC 553 1.000000** +GTF3A XB-GENE-6252591 no Xenopus_laevis CCUGGUUAG 9 SOLUTION NMR PDB 16405997 SOLUTION NMR ZF_C2HC 463 1.000000** +GTF3A XB-GENE-6252591 no Xenopus_laevis GGGUGGG 7 SELEX C 20095591 SELEX ZF_C2H2 57 1.000000** +GTF3A XB-GENE-6252591 no Xenopus_laevis GGGUGGG 7 SELEX R 20095591 SELEX ZF_C2H2 2 1.000000** +GW1.84.45.1 GW1.84.45.1 no Physcomitrella_patens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M198_0.6 0.089905 +GW1.84.45.1 GW1.84.45.1 no Physcomitrella_patens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M198_0.6 0.294495** +HEN1 AT4G20910 no Arabidopsis_thaliana AAAG 4 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 384 1.000000** +HEN1 AT4G20910 no Arabidopsis_thaliana UCAC 4 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 515 1.000000** +HEN1 AT4G20910 no Arabidopsis_thaliana UUCG 4 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 376 1.000000** +HEN1 AT4G20910 no Arabidopsis_thaliana UUCGCUUGCA 10 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 516 1.000000** +HEN1 AT4G20910 no Arabidopsis_thaliana UUCUCUC 7 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 442 1.000000** +HEN1 AT4G20910 no Arabidopsis_thaliana UUGC 4 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 486 1.000000** +HEN1 AT4G20910 no Arabidopsis_thaliana UUUCUCUC 8 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 555 1.000000** +HNRNPA0 ENSG00000177733 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 637 1.000000** +HNRNPA0 ENSG00000177733 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 636 1.000000** +HNRNPA0 ENSG00000177733 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 638 1.000000** +HNRNPA0 ENSG00000177733 no Homo_sapiens AUUUA 5 RNA affinity chromatography with HeLa nuclear extract confirmed by UV crosslink S 7585247 RNA affinity chromatography/purification RRM 635 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AAAAAAA 7 Filter binding assay with purified protein S 3733753 other RRM 685 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 664 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 695 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 694 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 696 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AUAGAA 6 Competition assay, UV crosslink, immunoprecipitation with HeLa nuclear extracts, EMSA and supershift assays. S 12419255 UV cross-linking;EMSA RRM 646 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AUAGCA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 675 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AUUUA 5 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. MALDI-TOF. S 15514164 UV cross-linking;EMSA RRM 654 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AUUUA 5 UV crosslink and immunoprecipitation with cytoplasmic lysates of lymphocytes. S 8473331 UV cross-linking RRM 665 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AUUUAA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 677 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AUUUAUUU 8 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. MALDI-TOF. S 15514164 UV cross-linking;EMSA RRM 655 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens CAAAGAGGAA 10 RNA pull-down assay and western blot using HeLa cell extract. S 23430061 other RRM 693 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens CAGGGA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.034041 +HNRNPA1 ENSG00000135486 no Homo_sapiens CAGGGA 6 UV crosslink, immunoblot, EMSA. S 11598017 EMSA;UV cross-linking RRM 641 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens CCCCCCC 7 Filter binding assay with purified protein S 3733753 other RRM 684 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens CGUAGGUC 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other RRM 660 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens CUAGACUAGA 10 Competition assays with recombinant protein S 16990281 other RRM 649 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens CUAGACUAGA 10 RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis. S 14703516 RNA affinity chromatography/purification RRM 647 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens CUAGACUAGA 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 640 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens CUGAG 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 651 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens AUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.139151 +HNRNPA1 ENSG00000135486 no Homo_sapiens UUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.195434** +HNRNPA1 ENSG00000135486 no Homo_sapiens GUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.141183 +HNRNPA1 ENSG00000135486 no Homo_sapiens AUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.047317 +HNRNPA1 ENSG00000135486 no Homo_sapiens UUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.066455 +HNRNPA1 ENSG00000135486 no Homo_sapiens GUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.048008 +HNRNPA1 ENSG00000135486 no Homo_sapiens GAGGAAG 7 In vivo splicing using wt and mutated sequences in MDA-MB-231, HeLa, HCT-116. S 23430061 other RRM 692 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens GAGGAG 6 Competition assays with recombinant protein S 16990281 other RRM 648 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens GAGUGGUGCG 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 688 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens GCCAAGGAGCC 11 protein affinity purification R 12415010 other RRM 183 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens GCCAAGGAGCC 11 protein affinity purification R 16548521 protein affinity purification RRM 52 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 663 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens GUUUAGA 7 UV crosslink with cytoplasmic extracts from HeLa cells. Protein identified by peptide sequencing and immunoprecipitation. S 9275159 UV cross-linking RRM 673 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGACA 6 UV crosslink, SDS-PAGE, immunoprecipitation, siRNA and Western blot. S 12833158 UV cross-linking;other RRM 662 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.034041 +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 EMSA with HeLa nuclear extract and recombinant protein. S 12060656 EMSA RRM 681 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 EMSA with recombinant protein. S 10202157 EMSA RRM 680 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 Filter binding assay, EMSA using recombinant protein S 19926721 other RRM 682 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 Immunoprecipitation, Gel shift and RNase H protection assays S 16396608 other RRM 689 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 RNase protection, immunoprecipitation in HeLa nuclear extract. S 9121425 other RRM 679 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 UV crosslink, immunoblot, EMSA. S 11598017 EMSA;UV cross-linking RRM 642 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 652 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGAA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.118426 +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGAU 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.07115 +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGCA 6 UV crosslink, immunoblot, EMSA. S 11598017 EMSA;UV cross-linking RRM 643 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGCU 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.035752 +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.236262** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGA 6 UV cross-linking, EMSA S 19667073 UV cross-linking;EMSA RRM 691 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGACUUA 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 687 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGC 6 UV crosslink, immunoprecipitation in HeLa cell nuclear extracts. S 9858549 UV cross-linking RRM 658 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGCAGGC 10 UV crosslink, immunoprecipitation in HeLa cell nuclear extracts. S 9858549 UV cross-linking RRM 659 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGU 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.141946 +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGU 6 UV cross-linking, EMSA S 19667073 UV cross-linking;EMSA RRM 690 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGA 6 RIP-chip C 17925491 RIP-chip RRM 72 0.495098** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGU 6 RIP-chip C 17925491 RIP-chip RRM 72 0.495098** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGA 6 SELEX C 7510636 SELEX RRM M271_0.6 0.393490** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGU 6 SELEX C 7510636 SELEX RRM M271_0.6 0.32974 +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGUA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.059507 +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGUGA 6 UV crosslink, immunoblot, EMSA. S 11598017 EMSA;UV cross-linking RRM 644 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGUGAA 7 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 645 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGUUAG 7 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 653 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UUAGAUUAGA 10 UV crosslink with cytoplasmic extracts from HeLa cells. Protein identified by peptide sequencing and immunoprecipitation. S 9275159 UV cross-linking RRM 674 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UUAGGGUUAGGG 12 fluorescence methods R 15342234 other RRM 43 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UUUAUA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 676 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UUUUUUU 7 Filter binding assay with purified protein S 3733753 other RRM 683 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UUUUUUU 7 RNA affinity chromatography confirmed by UV crosslink and Western blot using HeLa nuclear extracts. S 8449401 RNA affinity chromatography/purification;UV cross-linking RRM 686 1.000000** +HNRNPA1 ENSG00000135486 yes Homo_sapiens AGAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA RRM 661 1.000000** +HNRNPA1 ENSG00000135486 yes Homo_sapiens CUUAG 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 650 1.000000** +HNRNPA1 ENSG00000135486 yes Homo_sapiens GUAAGUACGC 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 639 1.000000** +HNRNPA1 ENSG00000135486 yes Homo_sapiens UACGGC 6 UV crosslink, immunoprecipitation in HeLa cell nuclear extracts. S 9858549 UV cross-linking RRM 657 1.000000** +HNRNPA1 ENSG00000135486 yes Homo_sapiens UAGGGU 6 RNase protection, immunoprecipitation in HeLa nuclear extract. S 9121425 other RRM 678 1.000000** +HNRNPA1 ENSG00000135486 yes Homo_sapiens UCGGGC 6 UV crosslink, immunoprecipitation in HeLa cell nuclear extracts. S 9858549 UV cross-linking RRM 656 1.000000** +HNRNPA1L2 ENSG00000139675 no Homo_sapiens AUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.064418 +HNRNPA1L2 ENSG00000139675 no Homo_sapiens UUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.169627** +HNRNPA1L2 ENSG00000139675 no Homo_sapiens GUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.096738 +HNRNPA1L2 ENSG00000139675 no Homo_sapiens AUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.054246 +HNRNPA1L2 ENSG00000139675 no Homo_sapiens UUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.142844 +HNRNPA1L2 ENSG00000139675 no Homo_sapiens GUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.081463 +HNRNPA2B1 ENSG00000122566 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 710 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 709 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 711 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens AUAGCA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 700 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens AUUUAA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 702 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens CUAGACUAGA 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 697 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens AUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.159858 +HNRNPA2B1 ENSG00000122566 no Homo_sapiens UUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.165777** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens GUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.16044 +HNRNPA2B1 ENSG00000122566 no Homo_sapiens AUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.04265 +HNRNPA2B1 ENSG00000122566 no Homo_sapiens UUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.044229 +HNRNPA2B1 ENSG00000122566 no Homo_sapiens GUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.042805 +HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGAAGCC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 703 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGAACC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 704 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGAGCC 11 Pull-down assay, UV cross-linking, CD spectroscopy with recombinant protein S 16548521 UV cross-linking;other RRM 708 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGAGCC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 705 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGAGCC 11 protein affinity purification R 12415010 other RRM 125 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGGGCC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 706 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCGAAGGAGCC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 707 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens UAGACA 6 UV crosslink, SDS-PAGE, immunoprecipitation, siRNA and Western blot. S 12833158 UV cross-linking;other RRM 699 1.000000** +HNRNPA2B1 ENSG00000122566 no Homo_sapiens UUUAUA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 701 1.000000** +HNRNPA2B1 ENSG00000122566 yes Homo_sapiens AGAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA RRM 698 1.000000** +HNRNPA3 ENSG00000170144 no Homo_sapiens GCCAAGGAGCC 11 protein affinity purification R 12415010 other RRM 123 1.000000** +HNRNPAB ENSG00000197451 no Homo_sapiens ACAAAGACAAA 11 SELEX C 12419250 SELEX RRM 76 1.000000** +HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis AAGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.063794 +HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis UAGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.135342** +HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis AGGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.023217 +HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis UGGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.049256 +HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis AAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.017878 +HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis UAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.037929 +HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis AGGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.006506 +HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis UGGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.013804 +HNRNPC ENSG00000092199 no Homo_sapiens AUUUA 5 UV crosslink and immunoprecipitation with cytoplasmic lysates of lymphocytes. S 8473331 UV cross-linking RRM 712 1.000000** +HNRNPC ENSG00000092199 no Homo_sapiens GGAUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 733 1.000000** +HNRNPC ENSG00000092199 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein S 7688265 other RRM 727 1.000000** +HNRNPC ENSG00000092199 no Homo_sapiens GGGGGGG 7 UV cross-linking, Immunoprecipitation S 12509468 UV cross-linking RRM 722 1.000000** +HNRNPC ENSG00000092199 no Homo_sapiens AUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.154023 +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.046077 +HNRNPC ENSG00000092199 no Homo_sapiens CUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.050246 +HNRNPC ENSG00000092199 no Homo_sapiens AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.297441** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.088981 +HNRNPC ENSG00000092199 no Homo_sapiens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.097032 +HNRNPC ENSG00000092199 no Homo_sapiens UUUUU 5 EMSA, UV crosslink, Western blot and immunoprecipitation with HeLa nuclear extracts. S 9393875 UV cross-linking;EMSA RRM 724 1.000000** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUU 5 UV crosslink and SDS-PAGE with recombinant protein, competition assay. S 11172920 UV cross-linking RRM 723 1.000000** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUA 6 SELEX of 20nt random sequences with purified protein confirmed by filter binding assay. Consensus motif: UUUUU. S 8083209 SELEX RRM s13 0.250000** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUC 6 SELEX of 20nt random sequences with purified protein confirmed by filter binding assay. Consensus motif: UUUUU. S 8083209 SELEX RRM s13 0.250000** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUG 6 SELEX of 20nt random sequences with purified protein confirmed by filter binding assay. Consensus motif: UUUUU. S 8083209 SELEX RRM s13 0.250000** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUU 6 SELEX of 20nt random sequences with purified protein confirmed by filter binding assay. Consensus motif: UUUUU. S 8083209 SELEX RRM s13 0.250000** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein S 7688265 other RRM 726 1.000000** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM 725 1.000000** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 UV cross-linking, Immunoprecipitation S 12509468 UV cross-linking RRM 721 1.000000** +HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts S 8798770 UV cross-linking RRM 720 1.000000** +HNRNPC ENSG00000092199 yes Homo_sapiens GCAUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 729 1.000000** +HNRNPC ENSG00000092199 yes Homo_sapiens GGAUAU 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 732 1.000000** +HNRNPC ENSG00000092199 yes Homo_sapiens GGAUUC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 730 1.000000** +HNRNPC ENSG00000092199 yes Homo_sapiens GGGUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 731 1.000000** +HNRNPCL1 ENSG00000179172 no Homo_sapiens AUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.137704 +HNRNPCL1 ENSG00000179172 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.051007 +HNRNPCL1 ENSG00000179172 no Homo_sapiens CUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.045962 +HNRNPCL1 ENSG00000179172 no Homo_sapiens AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.302738** +HNRNPCL1 ENSG00000179172 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.112138 +HNRNPCL1 ENSG00000179172 no Homo_sapiens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.101046 +HNRNPD ENSG00000138668 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay and Western blot with HeLa extracts or recombinant protein. S 16834569 other RRM 740 1.000000** +HNRNPD ENSG00000138668 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 742 1.000000** +HNRNPD ENSG00000138668 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 741 1.000000** +HNRNPD ENSG00000138668 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 743 1.000000** +HNRNPD ENSG00000138668 no Homo_sapiens AUUUA 5 UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein. S 8647811 UV cross-linking;EMSA RRM 739 1.000000** +HNRNPD ENSG00000138668 no Homo_sapiens AUUUAUUUA 9 UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein. S 8647811 UV cross-linking;EMSA RRM 738 1.000000** +HNRNPD ENSG00000138668 no Homo_sapiens UUAGAG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA RRM 735 1.000000** +HNRNPD ENSG00000138668 no Homo_sapiens UUAGGA 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA RRM 736 1.000000** +HNRNPD ENSG00000138668 no Homo_sapiens UUAGGG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA RRM 737 1.000000** +HNRNPD ENSG00000138668 no Homo_sapiens UUAGGG 6 Filter Binding Assay of recombinant protein and Synthesized oligos. S 7673195 other RRM 744 1.000000** +HNRNPDL ENSG00000152795 no Homo_sapiens AACCUUGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.000062 +HNRNPDL ENSG00000152795 no Homo_sapiens AAUACCA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.000845 +HNRNPDL ENSG00000152795 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 746 1.000000** +HNRNPDL ENSG00000152795 no Homo_sapiens ACACCAGAC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.000441 +HNRNPDL ENSG00000152795 no Homo_sapiens ACAUUAGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.007204 +HNRNPDL ENSG00000152795 no Homo_sapiens ACCACGCA 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.010777 +HNRNPDL ENSG00000152795 no Homo_sapiens ACUAACAGCA 10 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s79 1.000000** +HNRNPDL ENSG00000152795 no Homo_sapiens ACUAACU 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.002521 +HNRNPDL ENSG00000152795 no Homo_sapiens ACUAAGUA 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.005402 +HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGAG 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.009389 +HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGCC 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.037417** +HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGCG 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.024986 +HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGCU 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.024986 +HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGGA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.00942 +HNRNPDL ENSG00000152795 no Homo_sapiens ACUGCA 6 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s35 0.029748** +HNRNPDL ENSG00000152795 no Homo_sapiens ACUUUAA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.000569 +HNRNPDL ENSG00000152795 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 745 1.000000** +HNRNPDL ENSG00000152795 no Homo_sapiens AGUAGCC 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.004194 +HNRNPDL ENSG00000152795 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 747 1.000000** +HNRNPDL ENSG00000152795 no Homo_sapiens AUCUGAC 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.000064 +HNRNPDL ENSG00000152795 no Homo_sapiens AUGCGCA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.000338 +HNRNPDL ENSG00000152795 no Homo_sapiens AUUAGGCA 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.003616 +HNRNPDL ENSG00000152795 no Homo_sapiens CCUUUAGGC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.000105 +HNRNPDL ENSG00000152795 no Homo_sapiens GAACUAAGC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.000706 +HNRNPDL ENSG00000152795 no Homo_sapiens GACUAGCA 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.014322** +HNRNPDL ENSG00000152795 no Homo_sapiens GACUAGCG 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.003607 +HNRNPDL ENSG00000152795 no Homo_sapiens GCACUAGAU 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.004277 +HNRNPDL ENSG00000152795 no Homo_sapiens GCACUAGGC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.019171 +HNRNPDL ENSG00000152795 no Homo_sapiens GCGAGCA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.002739 +HNRNPDL ENSG00000152795 no Homo_sapiens GCUAGUA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.00172 +HNRNPDL ENSG00000152795 no Homo_sapiens GGACUAGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.044647** +HNRNPDL ENSG00000152795 no Homo_sapiens GGACUAGCU 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.014915 +HNRNPDL ENSG00000152795 no Homo_sapiens GGAGUAGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.012802 +HNRNPDL ENSG00000152795 no Homo_sapiens GGAGUAGCU 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.004277 +HNRNPDL ENSG00000152795 no Homo_sapiens GGAUUAGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.019171 +HNRNPDL ENSG00000152795 no Homo_sapiens UGUCGC 6 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s35 0.029748** +HNRNPF ENSG00000169813 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM;ZF_RNPHF 817 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM;ZF_RNPHF 823 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 833 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGAAGGGA 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 838 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGAU 6 NMR spectroscopy S 20526337 SOLUTION NMR RRM;ZF_RNPHF 839 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGAU 6 NMR spectroscopy, isothermal titration calorimetry S 23275549 SOLUTION NMR RRM;ZF_RNPHF 840 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 831 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 834 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGGAGGGG 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 837 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGU 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 832 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens CGAUGGGAA 9 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 803 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens CGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM;ZF_RNPHF 807 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens CGGGA 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM;ZF_RNPHF 801 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens CGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 830 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens CGGGAUGGGGUA 12 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 804 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens CGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 829 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens CGGGGGGGGC 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 836 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens CUGGGGU 7 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 805 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** +HNRNPF ENSG00000169813 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** +HNRNPF ENSG00000169813 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** +HNRNPF ENSG00000169813 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** +HNRNPF ENSG00000169813 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** +HNRNPF ENSG00000169813 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM;ZF_RNPHF 816 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGAAUGUGGG 11 UV cross-linking, immunoprecipitation with HeLa nuclear extract and recombinant protein S 19506027 UV cross-linking;other RRM;ZF_RNPHF 815 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGA 5 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 825 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM;ZF_RNPHF 818 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGC 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 812 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGG 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM;ZF_RNPHF 820 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 835 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGGCUG 8 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA RRM;ZF_RNPHF 819 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM;ZF_RNPHF 821 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 7512260 other RRM;ZF_RNPHF 822 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGU 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 810 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GGGGU 5 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 827 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens UGGGA 5 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 824 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens UGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM;ZF_RNPHF 802 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens UGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 828 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens UGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 811 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens UGGGG 5 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 826 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens UGGGGU 6 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 809 1.000000** +HNRNPF ENSG00000169813 yes Homo_sapiens AAGGCGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other RRM;ZF_RNPHF 814 1.000000** +HNRNPF ENSG00000169813 yes Homo_sapiens AAGGGGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other RRM;ZF_RNPHF 813 1.000000** +HNRNPF ENSG00000169813 yes Homo_sapiens AGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM;ZF_RNPHF 806 1.000000** +HNRNPF ENSG00000169813 yes Homo_sapiens AGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 808 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AAGAA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 887 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other ZF_RNPHF 876 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGAGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 889 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGAGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 890 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGAG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 891 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGA 5 In vivo splicing in HEK293T and HMVEC using wt or mutated constructs. S 20028692 other ZF_RNPHF 857 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 885 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 897 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGAAGGGA 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 902 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 895 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 898 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGGAGGGG 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 901 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGU 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 896 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AUUGGGUGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA ZF_RNPHF 853 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens CAGGAC 6 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 888 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification ZF_RNPHF 859 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGA 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification ZF_RNPHF 850 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 894 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 893 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGGGGGGC 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 900 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens CUGGGGGCUG 10 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 879 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** +HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other ZF_RNPHF 875 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGAAUGUGGG 11 UV cross-linking, immunoprecipitation with HeLa nuclear extract and recombinant protein S 19506027 UV cross-linking;other ZF_RNPHF 872 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGA 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 856 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 877 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGC 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 864 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGC 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 880 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 899 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGGCUG 8 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA ZF_RNPHF 878 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other ZF_RNPHF 883 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 7512260 other ZF_RNPHF 884 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGU 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 862 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGUCGAGGGG 11 EMSA S 16396608 EMSA ZF_RNPHF 886 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGA 5 GST pull-down, mass spectrometry, Immunoprecipitation, western blotting, RNA pull-down assay, REMSA, RNA interference S 20100605 other;EMSA; ZF_RNPHF 873 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 851 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 892 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGG 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 855 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 863 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGGU 6 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 861 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGU 5 GST pull-down, mass spectrometry, Immunoprecipitation, western blotting, RNA pull-down assay, REMSA, RNA interference S 20100605 other;EMSA; ZF_RNPHF 874 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGU 5 Western blotting using HEK293T nuclear extract, immunodepletion, surface plasmon resonance S 18806275 other ZF_RNPHF 869 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens UGUGGG 6 UV crosslink, competition assays, immunoblot, immunodepletion in HeLa nuclear extracts. S 10072387 UV cross-linking ZF_RNPHF 882 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens AAGGCGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other ZF_RNPHF 871 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens AAGGGGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other ZF_RNPHF 870 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens AGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification ZF_RNPHF 858 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens AGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 860 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens AUCGGGCGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA ZF_RNPHF 852 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens CGGGC 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 854 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens GGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 866 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens GGGGU 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 867 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens UGGGA 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 868 1.000000** +HNRNPH1 ENSG00000169045 yes Homo_sapiens UGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 865 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AAGAA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 939 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other ZF_RNPHF 928 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGAGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 941 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGAGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 942 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGAG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 943 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGA 5 In vivo splicing in HEK293T and HMVEC using wt or mutated constructs. S 20028692 other ZF_RNPHF 911 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 937 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 949 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGAAGGGA 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 954 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 947 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 950 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGGAGGGG 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 953 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGU 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 948 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AUUGGGUGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA ZF_RNPHF 906 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens CAGGAC 6 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 940 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification ZF_RNPHF 913 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGA 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification ZF_RNPHF 903 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 946 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 945 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGGGGGGC 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 952 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens CUGGGGGCUG 10 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 931 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** +HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other ZF_RNPHF 927 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGAAUGUGGG 11 UV cross-linking, immunoprecipitation with HeLa nuclear extract and recombinant protein S 19506027 UV cross-linking;other ZF_RNPHF 926 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGAGGG 7 RNAcompete C 23846655 RNAcompete ZF_RNPHF M151_0.6 0.198980** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGA 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 910 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 929 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGC 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 918 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGC 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 932 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGG 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 933 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 951 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGGA 6 RNA-affinity chromatography assays with recombinant protein. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 907 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGGCUG 8 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA ZF_RNPHF 930 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other ZF_RNPHF 935 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 7512260 other ZF_RNPHF 936 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGU 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 916 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens GGGUCGAGGGG 11 EMSA S 16396608 EMSA ZF_RNPHF 938 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 904 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 944 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGG 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 909 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 917 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGGU 6 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 915 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGU 5 Western blotting using HEK293T nuclear extract, immunodepletion, surface plasmon resonance S 18806275 other ZF_RNPHF 923 1.000000** +HNRNPH2 ENSG00000126945 no Homo_sapiens UGUGGG 6 UV crosslink, competition assays, immunoblot, immunodepletion in HeLa nuclear extracts. S 10072387 UV cross-linking ZF_RNPHF 934 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens AAGGCGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other ZF_RNPHF 925 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens AAGGGGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other ZF_RNPHF 924 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens AGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification ZF_RNPHF 912 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens AGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 914 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens AUCGGGCGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA ZF_RNPHF 905 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens CGGGC 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 908 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens GGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 920 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens GGGGU 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 921 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens UGGGA 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 922 1.000000** +HNRNPH2 ENSG00000126945 yes Homo_sapiens UGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 919 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 972 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGA 5 In vivo splicing in HEK293T and HMVEC using wt or mutated constructs. S 20028692 other RRM 962 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM 978 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 983 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGAAGGGA 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 988 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 981 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 984 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGGAGGGG 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 987 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGU 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 982 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AUUGGGUGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA RRM 958 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 964 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGA 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 955 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 980 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 990 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGGGGGGC 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 986 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 other RRM 182 0.110865** +HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 other RRM 182 0.110865** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 other RRM 182 0.110865** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 other RRM 182 0.110865** +HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 other RRM 182 0.110865** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 other RRM 182 0.110865** +HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 other RRM 182 0.110865** +HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 other RRM 182 0.110865** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 other RRM 182 0.110865** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 971 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGAAUGUGGG 11 UV cross-linking, immunoprecipitation with HeLa nuclear extract and recombinant protein S 19506027 UV cross-linking;other RRM 970 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGA 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other RRM 961 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM 973 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 985 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGGCUG 8 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA RRM 974 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM 976 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 7512260 other RRM 977 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens GGGUCGAGGGG 11 EMSA S 16396608 EMSA RRM 979 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM 956 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 989 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGG 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other RRM 960 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGU 5 Western blotting using HEK293T nuclear extract, immunodepletion, surface plasmon resonance S 18806275 other RRM 969 1.000000** +HNRNPH3 ENSG00000096746 no Homo_sapiens UGUGGG 6 UV crosslink, competition assays, immunoblot, immunodepletion in HeLa nuclear extracts. S 10072387 UV cross-linking RRM 975 1.000000** +HNRNPH3 ENSG00000096746 yes Homo_sapiens AGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 963 1.000000** +HNRNPH3 ENSG00000096746 yes Homo_sapiens AUCGGGCGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA RRM 957 1.000000** +HNRNPH3 ENSG00000096746 yes Homo_sapiens CGGGC 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other RRM 959 1.000000** +HNRNPH3 ENSG00000096746 yes Homo_sapiens GGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other RRM 966 1.000000** +HNRNPH3 ENSG00000096746 yes Homo_sapiens GGGGU 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other RRM 967 1.000000** +HNRNPH3 ENSG00000096746 yes Homo_sapiens UGGGA 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other RRM 968 1.000000** +HNRNPH3 ENSG00000096746 yes Homo_sapiens UGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other RRM 965 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 1038 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens ACCCAA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.085043** +HNRNPK ENSG00000165119 no Homo_sapiens ACCCAU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.070893 +HNRNPK ENSG00000165119 no Homo_sapiens ACCCCAA 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.055325 +HNRNPK ENSG00000165119 no Homo_sapiens ACCCCCAA 8 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s14 0.219670** +HNRNPK ENSG00000165119 no Homo_sapiens ACCCCCAC 8 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s14 0.219670** +HNRNPK ENSG00000165119 no Homo_sapiens ACCCCCCCCCUA 12 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s61 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens ACCCGA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.042575 +HNRNPK ENSG00000165119 no Homo_sapiens ACCCGC 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.021323 +HNRNPK ENSG00000165119 no Homo_sapiens ACCCGU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.035491 +HNRNPK ENSG00000165119 no Homo_sapiens ACCCUU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.02664 +HNRNPK ENSG00000165119 no Homo_sapiens CCAAACC 7 RNAcompete C 23846655 RNAcompete KH M026_0.6 0.061794 +HNRNPK ENSG00000165119 no Homo_sapiens CCAUACC 7 RNAcompete C 23846655 RNAcompete KH M026_0.6 0.029808 +HNRNPK ENSG00000165119 no Homo_sapiens CCAACCC 7 RNAcompete C 23846655 RNAcompete KH M026_0.6 0.099266** +HNRNPK ENSG00000165119 no Homo_sapiens CCAUCCC 7 RNAcompete C 23846655 RNAcompete KH M026_0.6 0.047884 +HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts. S 17928403 UV cross-linking;EMSA KH 1045 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay and Western blot with HeLa extracts or recombinant protein. S 16834569 other KH 1044 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay in HeLa nuclear extract S 11867641 other KH 1043 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 1036 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinat protein S 10523673 other KH 1041 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other KH 1026 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 UV cross-linking. Cell-free translation of different mRNAs. S 9160751 UV cross-linking KH 1040 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 1034 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens GCCCAA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.042592 +HNRNPK ENSG00000165119 no Homo_sapiens GCCCAC 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.021332 +HNRNPK ENSG00000165119 no Homo_sapiens GCCCAG 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.007158 +HNRNPK ENSG00000165119 no Homo_sapiens GCCCCCCUA 9 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s62 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens GCCCCUA 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.055325 +HNRNPK ENSG00000165119 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 1037 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinat protein S 10523673 other KH 1042 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens GGGGGGG 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 1035 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens UCCCAA 6 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. S 15514164 UV cross-linking;EMSA KH 1027 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens UCCCAA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.085043** +HNRNPK ENSG00000165119 no Homo_sapiens UCCCAC 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.042592 +HNRNPK ENSG00000165119 no Homo_sapiens UCCCAU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.070893 +HNRNPK ENSG00000165119 no Homo_sapiens UCCCCAA 7 NMR R 16854432 NMR KH 121 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens UCCCCAA 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.219657** +HNRNPK ENSG00000165119 no Homo_sapiens UCCCCAA 7 UV cross-linking, Chemical shift mapping (NMR) with recombinant protein. S 16854432 UV cross-linking;SOLUTION NMR KH 1031 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens UCCCCAU 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.110102 +HNRNPK ENSG00000165119 no Homo_sapiens UCCCCCAA 8 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. S 15514164 UV cross-linking;EMSA KH 1029 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens UCCCCCAU 8 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s14 0.110381 +HNRNPK ENSG00000165119 no Homo_sapiens UCCCCCCAA 9 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. S 15514164 UV cross-linking;EMSA KH 1028 1.000000** +HNRNPK ENSG00000165119 no Homo_sapiens UCCCCUA 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.219657** +HNRNPK ENSG00000165119 no Homo_sapiens UCCCCUU 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.110102 +HNRNPK ENSG00000165119 no Homo_sapiens UCCCGA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.042575 +HNRNPK ENSG00000165119 no Homo_sapiens UCCCUA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.031957 +HNRNPK ENSG00000165119 no Homo_sapiens UCCCUU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.02664 +HNRNPK ENSG00000165119 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 1039 1.000000** +HNRNPL ENSG00000104824 no Homo_sapiens AACA 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.034051 +HNRNPL ENSG00000104824 no Homo_sapiens ACAA 4 Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 UV cross-linking RRM 1046 1.000000** +HNRNPL ENSG00000104824 no Homo_sapiens ACAC 4 SELEX of 20nt random with recombinant protein. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.029062 +HNRNPL ENSG00000104824 no Homo_sapiens ACACAAA 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.093143** +HNRNPL ENSG00000104824 no Homo_sapiens ACACGAA 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.076333 +HNRNPL ENSG00000104824 no Homo_sapiens ACACAAC 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.06981 +HNRNPL ENSG00000104824 no Homo_sapiens ACACGAC 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.057211 +HNRNPL ENSG00000104824 no Homo_sapiens ACACAAG 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.071439 +HNRNPL ENSG00000104824 no Homo_sapiens ACACGAG 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.058546 +HNRNPL ENSG00000104824 no Homo_sapiens ACAU 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.00732 +HNRNPL ENSG00000104824 no Homo_sapiens AAACAAA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.016455 +HNRNPL ENSG00000104824 no Homo_sapiens ACACAAA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.058972 +HNRNPL ENSG00000104824 no Homo_sapiens AAAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.005076 +HNRNPL ENSG00000104824 no Homo_sapiens ACAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.018191 +HNRNPL ENSG00000104824 no Homo_sapiens AAACACA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.042258 +HNRNPL ENSG00000104824 no Homo_sapiens ACACACA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.151448** +HNRNPL ENSG00000104824 no Homo_sapiens AAAUACA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.013035 +HNRNPL ENSG00000104824 no Homo_sapiens ACAUACA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.046717 +HNRNPL ENSG00000104824 no Homo_sapiens CACA 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.045364 +HNRNPL ENSG00000104824 no Homo_sapiens CACACCACA 9 Mutational analysis, pulldown, western blot in HeLa nuclear extract S 22402488 other RRM 1052 1.000000** +HNRNPL ENSG00000104824 no Homo_sapiens CACC 4 Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 UV cross-linking RRM 1051 1.000000** +HNRNPL ENSG00000104824 no Homo_sapiens CACC 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.060435** +HNRNPL ENSG00000104824 no Homo_sapiens CACG 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.015222 +HNRNPL ENSG00000104824 no Homo_sapiens CCAC 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.038717 +HNRNPL ENSG00000104824 no Homo_sapiens GCAC 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.009752 +HNRNPL ENSG00000104824 no Homo_sapiens UACA 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.011426 +HNRNPLL ENSG00000143889 no Homo_sapiens CACACCACA 9 Mutational analysis, pulldown, western blot in HeLa nuclear extract S 22402488 other RRM 1054 1.000000** +HNRNPLL ENSG00000143889 no Homo_sapiens CACCGCA 7 UV cross-linking R 18719244 UV cross-linking RRM 169 0.495098** +HNRNPLL ENSG00000143889 no Homo_sapiens CACUGCA 7 UV cross-linking R 18719244 UV cross-linking RRM 169 0.495098** +HNRNPLL ENSG00000143889 no Homo_sapiens ACAAACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.091061 +HNRNPLL ENSG00000143889 no Homo_sapiens GCAAACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.033675 +HNRNPLL ENSG00000143889 no Homo_sapiens ACAUACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.099041 +HNRNPLL ENSG00000143889 no Homo_sapiens GCAUACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.036627 +HNRNPLL ENSG00000143889 no Homo_sapiens ACACACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.255456** +HNRNPLL ENSG00000143889 no Homo_sapiens GCACACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.094471 +HNRNPLL ENSG00000143889 yes Homo_sapiens CAGACGACA 9 Mutational analysis, pulldown, western blot in HeLa nuclear extract S 22402488 other RRM 1053 1.000000** +HNRNPM ENSG00000099783 no Homo_sapiens GAAGGAA 7 In vivo splicing with deletion and mutation analysis. RNA pulldown assay in HeLa nuclear extracts. S 24533984 other RRM;HNRNP_M 1056 1.000000** +HNRNPM ENSG00000099783 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM;HNRNP_M 1055 1.000000** +HNRNPR ENSGALG00000000814 no Gallus_gallus AAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.003049 +HNRNPR ENSGALG00000000814 no Gallus_gallus CAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.009335 +HNRNPR ENSGALG00000000814 no Gallus_gallus ACAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.006214 +HNRNPR ENSGALG00000000814 no Gallus_gallus CCAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.019025 +HNRNPR ENSGALG00000000814 no Gallus_gallus AAAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.008523 +HNRNPR ENSGALG00000000814 no Gallus_gallus CAAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.026095 +HNRNPR ENSGALG00000000814 no Gallus_gallus ACAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.017369 +HNRNPR ENSGALG00000000814 no Gallus_gallus CCAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.05318 +HNRNPR ENSGALG00000000814 no Gallus_gallus AAAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.008334 +HNRNPR ENSGALG00000000814 no Gallus_gallus CAAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.025518 +HNRNPR ENSGALG00000000814 no Gallus_gallus ACAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.016985 +HNRNPR ENSGALG00000000814 no Gallus_gallus CCAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.052004 +HNRNPR ENSGALG00000000814 no Gallus_gallus AAAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.023297 +HNRNPR ENSGALG00000000814 no Gallus_gallus CAAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.07133 +HNRNPR ENSGALG00000000814 no Gallus_gallus ACAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.047477 +HNRNPR ENSGALG00000000814 no Gallus_gallus CCAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.145366** +HNRNPR ENSXETG00000007102 no Xenopus_tropicalis AAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M243_0.6 0.188455** +HNRNPR ENSXETG00000007102 no Xenopus_tropicalis CAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M243_0.6 0.118375 +HNRNPU ENSG00000153187 no Homo_sapiens AAAAAAA 7 Filter Binding Assay with purified protein. S 8174554 other SAP;SPRY 1070 1.000000** +HNRNPU ENSG00000153187 no Homo_sapiens AAAAAAA 7 SDS-PAGE of ribonucleotide homopolymers with recombinant protein S 1628625 other SAP;SPRY 1067 1.000000** +HNRNPU ENSG00000153187 no Homo_sapiens CCCCCCC 7 Filter Binding Assay with purified protein. S 8174554 other SAP;SPRY 1071 1.000000** +HNRNPU ENSG00000153187 no Homo_sapiens GGGGGGG 7 EMSA, UV crosslink, immunoprecipitation using HeLa cell nuclear extracts. UV crosslink, competition assay with purified protein. S 9765391 UV cross-linking;EMSA SAP;SPRY 1073 1.000000** +HNRNPU ENSG00000153187 no Homo_sapiens GGGGGGG 7 Filter Binding Assay with purified protein. S 8174554 other SAP;SPRY 1072 1.000000** +HNRNPU ENSG00000153187 no Homo_sapiens GGGGGGG 7 SDS-PAGE of ribonucleotide homopolymers with recombinant protein S 1628625 other SAP;SPRY 1068 1.000000** +HNRNPU ENSG00000153187 no Homo_sapiens UUUUUUU 7 EMSA, UV crosslink, immunoprecipitation using HeLa cell nuclear extracts. UV crosslink, competition assay with purified protein. S 9765391 UV cross-linking;EMSA SAP;SPRY 1074 1.000000** +HNRNPU ENSG00000153187 no Homo_sapiens UUUUUUU 7 SDS-PAGE of ribonucleotide homopolymers with recombinant protein S 1628625 other SAP;SPRY 1069 1.000000** +HOW FBGN0264491 no Drosophila_melanogaster ACAUACUAACAC 12 protein affinity purification R 17507411 protein affinity purification KH 79 1.000000** +HOW FBGN0264491 no Drosophila_melanogaster ACUAACA 7 RNAcompete C 23846655 RNAcompete KH M113_0.6 0.341651** +HOW FBGN0264491 no Drosophila_melanogaster ACUAACC 7 RNAcompete C 23846655 RNAcompete KH M113_0.6 0.23324 +HOW FBGN0264491 no Drosophila_melanogaster ACUAACG 7 RNAcompete C 23846655 RNAcompete KH M113_0.6 0.134429 +HRB27C FBGN0004838 no Drosophila_melanogaster UAGGAUA 7 RNAcompete C 23846655 RNAcompete RRM M090_0.6 0.063461 +HRB27C FBGN0004838 no Drosophila_melanogaster UAGGUUA 7 RNAcompete C 23846655 RNAcompete RRM M090_0.6 0.134074** +HRB27C FBGN0004838 no Drosophila_melanogaster UAGGAAA 7 RNAcompete C 23846655 RNAcompete RRM M028_0.6 0.018343 +HRB27C FBGN0004838 no Drosophila_melanogaster UAGGUAA 7 RNAcompete C 23846655 RNAcompete RRM M028_0.6 0.048747 +HRB27C FBGN0004838 no Drosophila_melanogaster UAGGAUA 7 RNAcompete C 23846655 RNAcompete RRM M028_0.6 0.04911 +HRB27C FBGN0004838 no Drosophila_melanogaster UAGGUUA 7 RNAcompete C 23846655 RNAcompete RRM M028_0.6 0.130510** +HRB87F FBGN0004237 no Drosophila_melanogaster GGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M029_0.6 0.315660** +HRB98DE FBGN0001215 no Drosophila_melanogaster GGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M092_0.6 0.329639** +HRB98DE FBGN0001215 no Drosophila_melanogaster GGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M091_0.6 0.192877** +HRB98DE FBGN0001215 no Drosophila_melanogaster GUUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M091_0.6 0.075156 +HRB98DE FBGN0001215 no Drosophila_melanogaster GGUAGGU 7 RNAcompete C 23846655 RNAcompete RRM M091_0.6 0.04896 +HRB98DE FBGN0001215 no Drosophila_melanogaster GUUAGGU 7 RNAcompete C 23846655 RNAcompete RRM M091_0.6 0.019078 +HRB98DE FBGN0001215 no Drosophila_melanogaster AGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M093_0.6 0.095318 +HRB98DE FBGN0001215 no Drosophila_melanogaster GGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M093_0.6 0.312457** +HRP1 YOL123W no Saccharomyces_cerevisiae UAUAUAU 7 SOLUTION NMR PDB 16794580 SOLUTION NMR RRM 417 1.000000** +HRP1 YOL123W no Saccharomyces_cerevisiae UACAUAA 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.038673 +HRP1 YOL123W no Saccharomyces_cerevisiae UAUAUAA 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.101633 +HRP1 YOL123W no Saccharomyces_cerevisiae UACGUAA 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.040546 +HRP1 YOL123W no Saccharomyces_cerevisiae UAUGUAA 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.106555 +HRP1 YOL123W no Saccharomyces_cerevisiae UACAUAC 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.022913 +HRP1 YOL123W no Saccharomyces_cerevisiae UAUAUAC 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.060214 +HRP1 YOL123W no Saccharomyces_cerevisiae UACGUAC 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.024022 +HRP1 YOL123W no Saccharomyces_cerevisiae UAUGUAC 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.06313 +HRP1 YOL123W no Saccharomyces_cerevisiae UACAUAG 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.057683 +HRP1 YOL123W no Saccharomyces_cerevisiae UAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.15159 +HRP1 YOL123W no Saccharomyces_cerevisiae UACGUAG 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.060476 +HRP1 YOL123W no Saccharomyces_cerevisiae UAUGUAG 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.158931** +IFIH1 ENSG00000115267 no Homo_sapiens GGCCCU 6 X-RAY DIFFRACTION PDB 23273991 X-RAY DIFFRACTION CARD;HELICASE_C;RESIII;RIG-I_C-RD 391 1.000000** +IFIH1 ENSG00000115267 no Homo_sapiens GGGCCGCGGAU 11 X-RAY DIFFRACTION PDB 23273991 X-RAY DIFFRACTION CARD;HELICASE_C;RESIII;RIG-I_C-RD 546 1.000000** +IFIH1 ENSG00000115267 no Homo_sapiens UCCG 4 X-RAY DIFFRACTION PDB 23273991 X-RAY DIFFRACTION CARD;HELICASE_C;RESIII;RIG-I_C-RD 400 1.000000** +IGF2BP1 ENSG00000159217 no Homo_sapiens AAGCACCCGUU 11 SELEX C 12507992 SELEX KH;RRM M296_0.6 0.278085** +IGF2BP2 ENSG00000073792 no Homo_sapiens AAAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.058613 +IGF2BP2 ENSG00000073792 no Homo_sapiens CAAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.018336 +IGF2BP2 ENSG00000073792 no Homo_sapiens GAAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.017855 +IGF2BP2 ENSG00000073792 no Homo_sapiens ACAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.076341** +IGF2BP2 ENSG00000073792 no Homo_sapiens CCAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.023882 +IGF2BP2 ENSG00000073792 no Homo_sapiens GCAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.023256 +IGF2BP2 ENSG00000073792 no Homo_sapiens AAAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.032073 +IGF2BP2 ENSG00000073792 no Homo_sapiens CAAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.010034 +IGF2BP2 ENSG00000073792 no Homo_sapiens GAAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.00977 +IGF2BP2 ENSG00000073792 no Homo_sapiens ACAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.041773 +IGF2BP2 ENSG00000073792 no Homo_sapiens CCAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.013068 +IGF2BP2 ENSG00000073792 no Homo_sapiens GCAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.012726 +IGF2BP2 ENSG00000073792 no Homo_sapiens AAACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.023029 +IGF2BP2 ENSG00000073792 no Homo_sapiens CAACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.007204 +IGF2BP2 ENSG00000073792 no Homo_sapiens GAACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.007015 +IGF2BP2 ENSG00000073792 no Homo_sapiens ACACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.029994 +IGF2BP2 ENSG00000073792 no Homo_sapiens CCACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.009383 +IGF2BP2 ENSG00000073792 no Homo_sapiens GCACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.009137 +IGF2BP2 ENSG00000073792 no Homo_sapiens AAAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.027242 +IGF2BP2 ENSG00000073792 no Homo_sapiens CAAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.008522 +IGF2BP2 ENSG00000073792 no Homo_sapiens GAAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.008299 +IGF2BP2 ENSG00000073792 no Homo_sapiens ACAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.035481 +IGF2BP2 ENSG00000073792 no Homo_sapiens CCAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.0111 +IGF2BP2 ENSG00000073792 no Homo_sapiens GCAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.010809 +IGF2BP2 ENSG00000073792 no Homo_sapiens AAAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.014907 +IGF2BP2 ENSG00000073792 no Homo_sapiens CAAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.004663 +IGF2BP2 ENSG00000073792 no Homo_sapiens GAAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.004541 +IGF2BP2 ENSG00000073792 no Homo_sapiens ACAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.019415 +IGF2BP2 ENSG00000073792 no Homo_sapiens CCAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.006074 +IGF2BP2 ENSG00000073792 no Homo_sapiens GCAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.005915 +IGF2BP2 ENSG00000073792 no Homo_sapiens AAACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.010703 +IGF2BP2 ENSG00000073792 no Homo_sapiens CAACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.003348 +IGF2BP2 ENSG00000073792 no Homo_sapiens GAACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.003261 +IGF2BP2 ENSG00000073792 no Homo_sapiens ACACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.013941 +IGF2BP2 ENSG00000073792 no Homo_sapiens CCACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.004361 +IGF2BP2 ENSG00000073792 no Homo_sapiens GCACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.004247 +IGF2BP3 ENSG00000136231 no Homo_sapiens AAAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.0329 +IGF2BP3 ENSG00000136231 no Homo_sapiens ACAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.040492** +IGF2BP3 ENSG00000136231 no Homo_sapiens AAAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.025377 +IGF2BP3 ENSG00000136231 no Homo_sapiens ACAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.031233 +IGF2BP3 ENSG00000136231 no Homo_sapiens AAACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.025302 +IGF2BP3 ENSG00000136231 no Homo_sapiens ACACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.03114 +IGF2BP3 ENSG00000136231 no Homo_sapiens AAAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.017073 +IGF2BP3 ENSG00000136231 no Homo_sapiens ACAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.021012 +IGF2BP3 ENSG00000136231 no Homo_sapiens AAAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.013169 +IGF2BP3 ENSG00000136231 no Homo_sapiens ACAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.016208 +IGF2BP3 ENSG00000136231 no Homo_sapiens AAACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.01313 +IGF2BP3 ENSG00000136231 no Homo_sapiens ACACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.016159 +IGF2BP3 ENSG00000136231 no Homo_sapiens CAUU 4 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation KH;RRM 118 1.000000** +IGHMBP2 ENSG00000132740 no Homo_sapiens AAAAAAA 7 X-RAY DIFFRACTION PDB 22965130 X-RAY DIFFRACTION R3H;ZF_AN1 581 1.000000** +IGHMBP2 ENSG00000132740 no Homo_sapiens AAAAAAAA 8 X-RAY DIFFRACTION PDB 22965130 X-RAY DIFFRACTION R3H;ZF_AN1 327 1.000000** +KHDRBS1 ENSG00000121774 no Homo_sapiens AUAAAA 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.043652 +KHDRBS1 ENSG00000121774 no Homo_sapiens AUAAAAA 7 RNAcompete C 23846655 RNAcompete KH M160_0.6 0.159736 +KHDRBS1 ENSG00000121774 no Homo_sapiens AUAAAAC 7 RNAcompete C 23846655 RNAcompete KH M160_0.6 0.109291 +KHDRBS1 ENSG00000121774 no Homo_sapiens AUAAAAG 7 RNAcompete C 23846655 RNAcompete KH M160_0.6 0.230593** +KHDRBS1 ENSG00000121774 no Homo_sapiens AUUUAA 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s33 0.21967 +KHDRBS1 ENSG00000121774 no Homo_sapiens AUUUAC 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s33 0.437165** +KHDRBS1 ENSG00000121774 no Homo_sapiens CAAAAU 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.052193 +KHDRBS1 ENSG00000121774 no Homo_sapiens CUAAAA 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.130093** +KHDRBS1 ENSG00000121774 no Homo_sapiens CUAAAU 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.130093** +KHDRBS1 ENSG00000121774 no Homo_sapiens GAAAAC 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.005877 +KHDRBS1 ENSG00000121774 no Homo_sapiens UUAAAA 6 Differential display and cDNA-representational difference analysis (cDNA-RDA) in vitro. In vivo coimmunoprecipitation. Further in vitro binding: protein incubated with labeled RNA. S 12490714 other KH 1156 1.000000** +KHDRBS1 ENSG00000121774 no Homo_sapiens UUAAAA 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.086872 +KHDRBS1 ENSG00000121774 no Homo_sapiens UUAAAU 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.086872 +KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUA 5 RNA pull-down assays with HEK293T nuclear extract, UV cross-linking and immunoprecipitation with HeLa and HEK293T nuclear extract, mutation analysis, EMSA and Western blot with HEK293T nuclear extract. S 20186123 EMSA;UV cross-linking KH 1157 1.000000** +KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUAC 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s33 0.21967 +KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUUU 6 Differential display and cDNA-representational difference analysis (cDNA-RDA) in vitro. In vivo coimmunoprecipitation. Further in vitro binding: protein incubated with labeled RNA. S 12490714 other KH 1155 1.000000** +KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUUUU 7 Immunoblot analysis with 293 and 293T lysates. Northwestern with recombinant protein. S 17764653 other KH 1159 1.000000** +KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUUUU 7 Immunoprecipitation, immunoblotting with HeLa cell lysates. S 10913193 other KH 1158 1.000000** +KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAAA 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.022476 +KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAACA 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.023232 +KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAGA 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.098258 +KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAAC 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.024081 +KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAACC 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.02489 +KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAGC 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.105273 +KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAAG 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.054883 +KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAACG 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.056728 +KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAGG 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.239930** +KHDRBS2 ENSG00000112232 no Homo_sapiens AAUAAAA 7 RNAcompete C 23846655 RNAcompete KH M176_0.6 0.096244 +KHDRBS2 ENSG00000112232 no Homo_sapiens GAUAAAA 7 RNAcompete C 23846655 RNAcompete KH M176_0.6 0.128722** +KHDRBS2 ENSG00000112232 no Homo_sapiens AAUAAAC 7 RNAcompete C 23846655 RNAcompete KH M176_0.6 0.059363 +KHDRBS2 ENSG00000112232 no Homo_sapiens GAUAAAC 7 RNAcompete C 23846655 RNAcompete KH M176_0.6 0.079395 +KHDRBS2 ENSG00000112232 no Homo_sapiens UUUUUUU 7 Immunoblot analysis with 293 and 293T lysates. Northwestern with recombinant protein. S 17764653 other KH 1242 1.000000** +KHDRBS3 ENSG00000131773 no Homo_sapiens AAAUAAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.047842** +KHDRBS3 ENSG00000131773 no Homo_sapiens AGAUAAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.02404 +KHDRBS3 ENSG00000131773 no Homo_sapiens AUAAAAC 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.047842** +KHDRBS3 ENSG00000131773 no Homo_sapiens AUAAAA 6 RNAcompete C 23846655 RNAcompete KH M033_0.6 0.211219 +KHDRBS3 ENSG00000131773 no Homo_sapiens AUAAAC 6 RNAcompete C 23846655 RNAcompete KH M033_0.6 0.530114** +KHDRBS3 ENSG00000131773 no Homo_sapiens AUAAAG 6 RNAcompete C 23846655 RNAcompete KH M033_0.6 0.224002 +KHDRBS3 ENSG00000131773 no Homo_sapiens AUUAAAC 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.01205 +KHDRBS3 ENSG00000131773 no Homo_sapiens UAAAUAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.004545 +KHDRBS3 ENSG00000131773 no Homo_sapiens UUUUUUU 7 Immunoblot analysis with 293 and 293T lysates. Northwestern with recombinant protein. S 17764653 other KH 1243 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens AGGG 4 NMR R 18684992 NMR KH 172 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens AUUUUA 6 UV cross-linking with recombinant protein S 16126846 UV cross-linking KH 1109 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens CACCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CUCCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CCCCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CGCCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CAGCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CUGCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CCGCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CGGCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CACCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CUCCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CCCCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CGCCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CAGCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CUGCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CCGCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CGGCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens GGGU 4 NMR R 18684992 NMR KH 67 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens AUGUAUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens UUGUAUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CUGUAUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens GUGUAUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens AUGUGUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens UUGUGUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CUGUGUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens GUGUGUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens AUGUAUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens UUGUAUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CUGUAUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens GUGUAUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens AUGUGUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens UUGUGUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens CUGUGUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens GUGUGUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** +KHSRP ENSG00000088247 no Homo_sapiens UAGGG 5 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1117 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAGGUA 6 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1120 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAGGUU 6 NMR R 18684992 NMR KH 63 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAGUAU 6 NMR R 18684992 NMR KH 54 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAGUAU 6 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1119 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAUUAU 6 NMR R 18684992 NMR KH 28 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAUUAU 6 NMR and CD with recombinant protein S 17437720 NMR KH 1112 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAUUAU 6 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1118 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAUUUA 6 NMR and CD with recombinant protein S 17437720 NMR KH 1111 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAUUUAUUAUUU 12 NMR and CD with recombinant protein S 17437720 NMR KH 1110 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAUUUAUA 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 61 0.495098** +KHSRP ENSG00000088247 no Homo_sapiens UAUUUAUU 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 61 0.495098** +KHSRP ENSG00000088247 no Homo_sapiens UGCAUG 6 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA KH 1113 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UGGG 4 NMR R 18684992 NMR KH 13 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UGGGU 5 NMR R 18684992 NMR KH 184 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UGGGU 5 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1116 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UUAG 4 NMR R 18684992 NMR KH 12 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UUGGG 5 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1114 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UUUAG 5 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1115 1.000000** +KHSRP ENSG00000088247 no Homo_sapiens UAUAUUUA 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 81 0.247531** +KHSRP ENSG00000088247 no Homo_sapiens UUUAUUUA 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 81 0.247531** +KHSRP ENSG00000088247 no Homo_sapiens UAUAUUUU 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 81 0.247531** +KHSRP ENSG00000088247 no Homo_sapiens UUUAUUUU 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 81 0.247531** +KHSRP N/A no Gallus_gallus CCCC 4 SELEX R 17893325 SELEX N\A 1185_17893325.pfm 0.247531** +KHSRP N/A no Gallus_gallus GUCC 4 SELEX R 17893325 SELEX N\A 1186_17893325.pfm 1.000000** +KPOL_520P25 DS480421 no Vanderwaltozyma_polyspora UAAAAAAAA 9 X-RAY DIFFRACTION PDB 22722195 X-RAY DIFFRACTION PAZ;PIWI 447 1.000000** +LARK FBGN0011640 no Drosophila_melanogaster ACAAA 5 RIP-chip C 17971870 RIP-chip ZF_CCHC;RRM 32 1.000000** +LARK FBGN0011640 no Drosophila_melanogaster ACGCGCG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M034_0.6 0.131602 +LARK FBGN0011640 no Drosophila_melanogaster UCGCGCG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M034_0.6 0.264735** +LARK FBGN0011640 no Drosophila_melanogaster GCGCGCG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M034_0.6 0.079312 +LARK FBGN0011640 no Drosophila_melanogaster CGCGCG 6 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M119_0.6 0.321744** +LARK FBGN0011640 no Drosophila_melanogaster GGCGCG 6 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M119_0.6 0.121695 +LIN28A ENSG00000131914 no Homo_sapiens AGGAGAU 7 SOLUTION NMR PDB 22157959 SOLUTION NMR CSD;ZF_CCHC 506 1.000000** +LIN28A ENSG00000131914 no Homo_sapiens AGGAGAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.104502 +LIN28A ENSG00000131914 no Homo_sapiens UGGAGAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.068488 +LIN28A ENSG00000131914 no Homo_sapiens CGGAGAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.133169** +LIN28A ENSG00000131914 no Homo_sapiens AGGAGUA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.033962 +LIN28A ENSG00000131914 no Homo_sapiens UGGAGUA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.022258 +LIN28A ENSG00000131914 no Homo_sapiens CGGAGUA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.043278 +LIN28A ENSG00000131914 no Homo_sapiens CGGAGGA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M153_0.6 0.097253** +LIN28A ENSG00000131914 no Homo_sapiens UGGAGGA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M153_0.6 0.033765 +LIN28A ENSG00000131914 no Homo_sapiens CGGAGGG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M153_0.6 0.076571 +LIN28A ENSG00000131914 no Homo_sapiens UGGAGGG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M153_0.6 0.026585 +LIN28A ENSMUSG00000050966 no Mus_musculus AGGGAUUUUG 10 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 513 1.000000** +LIN28A ENSMUSG00000050966 no Mus_musculus AGUGAUUUU 9 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 395 1.000000** +LIN28A ENSMUSG00000050966 no Mus_musculus CGGAG 5 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 369 1.000000** +LIN28A ENSMUSG00000050966 no Mus_musculus CUAUGAUA 8 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 444 1.000000** +LIN28A ENSMUSG00000050966 no Mus_musculus CUAUGAUACC 10 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 576 1.000000** +LIN28A ENSMUSG00000050966 no Mus_musculus GGAG 4 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 556 1.000000** +LMJF.18.0180 LMJF.18.0180 no Leishmania_major CAUUUU 6 RNAcompete C 23846655 RNAcompete RRM M187_0.6 0.855774** +LMJF.32.0750 LMJF.32.0750 no Leishmania_major GUACACG 7 RNAcompete C 23846655 RNAcompete RRM M194_0.6 0.151781 +LMJF.32.0750 LMJF.32.0750 no Leishmania_major UUACACG 7 RNAcompete C 23846655 RNAcompete RRM M194_0.6 0.186238** +LMJF.32.0750 LMJF.32.0750 no Leishmania_major GUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M194_0.6 0.071844 +LMJF.32.0750 LMJF.32.0750 no Leishmania_major UUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M194_0.6 0.088154 +LYZ ENSGALG00000009963 no Gallus_gallus CAGA 4 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION LYS 582 1.000000** +MAL13P1.35 MAL13P1.35 no Plasmodium_falciparum AAUACAC 7 RNAcompete C 23846655 RNAcompete RRM M202_0.6 0.126547 +MAL13P1.35 MAL13P1.35 no Plasmodium_falciparum GAUACAC 7 RNAcompete C 23846655 RNAcompete RRM M202_0.6 0.071918 +MAL13P1.35 MAL13P1.35 no Plasmodium_falciparum AUUACAC 7 RNAcompete C 23846655 RNAcompete RRM M202_0.6 0.201392** +MAL13P1.35 MAL13P1.35 no Plasmodium_falciparum GUUACAC 7 RNAcompete C 23846655 RNAcompete RRM M202_0.6 0.114452 +MAL8P1.40 MAL8P1.40 no Plasmodium_falciparum AUACAUA 7 RNAcompete C 23846655 RNAcompete RRM M179_0.6 0.133392 +MAL8P1.40 MAL8P1.40 no Plasmodium_falciparum UUACAUA 7 RNAcompete C 23846655 RNAcompete RRM M179_0.6 0.04739 +MAL8P1.40 MAL8P1.40 no Plasmodium_falciparum AUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M179_0.6 0.335711** +MAL8P1.40 MAL8P1.40 no Plasmodium_falciparum UUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M179_0.6 0.119269 +MATR3 ENSG00000015479 no Homo_sapiens AAUCUUA 7 RNAcompete C 23846655 RNAcompete RRM M036_0.6 0.051845 +MATR3 ENSG00000015479 no Homo_sapiens CAUCUUA 7 RNAcompete C 23846655 RNAcompete RRM M036_0.6 0.041532 +MATR3 ENSG00000015479 no Homo_sapiens AAUCUUG 7 RNAcompete C 23846655 RNAcompete RRM M036_0.6 0.189347** +MATR3 ENSG00000015479 no Homo_sapiens CAUCUUG 7 RNAcompete C 23846655 RNAcompete RRM M036_0.6 0.151681 +MBL FBGN0265487 no Drosophila_melanogaster AGUCU 5 SELEX C 18557632 SELEX ZF_CCCH 174 1.000000** +MBL FBGN0265487 no Drosophila_melanogaster AGUCU 5 SELEX R 18557632 SELEX ZF_CCCH 159 1.000000** +MBL FBGN0265487 no Drosophila_melanogaster CUGCUGCUGCUG 12 EMSA R 18557632 EMSA ZF_CCCH 7 1.000000** +MBNL1 ENSG00000152601 no Homo_sapiens ACGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.013753 +MBNL1 ENSG00000152601 no Homo_sapiens ACGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.016806 +MBNL1 ENSG00000152601 no Homo_sapiens ACGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01528 +MBNL1 ENSG00000152601 no Homo_sapiens ACGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01528 +MBNL1 ENSG00000152601 no Homo_sapiens AUGCCA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.008697 +MBNL1 ENSG00000152601 no Homo_sapiens AUGCCC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.010628 +MBNL1 ENSG00000152601 no Homo_sapiens AUGCCG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.009662 +MBNL1 ENSG00000152601 no Homo_sapiens AUGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.028003 +MBNL1 ENSG00000152601 no Homo_sapiens AUGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.025459 +MBNL1 ENSG00000152601 no Homo_sapiens CCGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.018332 +MBNL1 ENSG00000152601 no Homo_sapiens CCGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.022402 +MBNL1 ENSG00000152601 no Homo_sapiens CCGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.020367 +MBNL1 ENSG00000152601 no Homo_sapiens CCGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.020367 +MBNL1 ENSG00000152601 no Homo_sapiens CGCUGCGGC 9 Mutational analysis, UV-crosslinking assay using purified recombinant protein. S 15257297 UV cross-linking ZF_CCCH 1124 1.000000** +MBNL1 ENSG00000152601 no Homo_sapiens CGCUUU 6 Mutational analysis, UV-crosslinking assay using purified recombinant protein. S 15257297 UV cross-linking ZF_CCCH 1121 1.000000** +MBNL1 ENSG00000152601 no Homo_sapiens CUGCCA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.011593 +MBNL1 ENSG00000152601 no Homo_sapiens CUGCCC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.014166 +MBNL1 ENSG00000152601 no Homo_sapiens CUGCCG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01288 +MBNL1 ENSG00000152601 no Homo_sapiens CUGCCU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01288 +MBNL1 ENSG00000152601 no Homo_sapiens CUGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.030546 +MBNL1 ENSG00000152601 no Homo_sapiens CUGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.037326** +MBNL1 ENSG00000152601 no Homo_sapiens CUGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.033936 +MBNL1 ENSG00000152601 no Homo_sapiens CUGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.033936 +MBNL1 ENSG00000152601 no Homo_sapiens GCGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.013075 +MBNL1 ENSG00000152601 no Homo_sapiens GCGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.011888 +MBNL1 ENSG00000152601 no Homo_sapiens GCGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.011888 +MBNL1 ENSG00000152601 no Homo_sapiens GCGCUUGUGC 10 UV-crosslinking, mutational analysis, using HEK293T lysate overexpressing recombinant protein. S 17702765 UV cross-linking ZF_CCCH 1126 1.000000** +MBNL1 ENSG00000152601 no Homo_sapiens GCUUGC 6 RNAcompete C 23846655 RNAcompete ZF_CCCH M037_0.6 0.458307** +MBNL1 ENSG00000152601 no Homo_sapiens GGCUUU 6 RNA-affinity purification, western blot with HeLa nuclear extract S 20519504 other;RNA affinity chromatography/purification ZF_CCCH 1123 1.000000** +MBNL1 ENSG00000152601 no Homo_sapiens GUGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.017829 +MBNL1 ENSG00000152601 no Homo_sapiens GUGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.021787 +MBNL1 ENSG00000152601 no Homo_sapiens GUGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.019808 +MBNL1 ENSG00000152601 no Homo_sapiens GUGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.019808 +MBNL1 ENSG00000152601 no Homo_sapiens UCGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.018332 +MBNL1 ENSG00000152601 no Homo_sapiens UCGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.022402 +MBNL1 ENSG00000152601 no Homo_sapiens UCGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.020367 +MBNL1 ENSG00000152601 no Homo_sapiens UCGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.020367 +MBNL1 ENSG00000152601 no Homo_sapiens UGCUGCUUUU 10 Mutational analysis, UV-crosslinking assay using purified recombinant protein. S 15257297 UV cross-linking ZF_CCCH 1122 1.000000** +MBNL1 ENSG00000152601 no Homo_sapiens UGUCUCGCU 9 Mutational analysis, UV-crosslinking assay using purified recombinant protein. S 15257297 UV cross-linking ZF_CCCH 1125 1.000000** +MBNL1 ENSG00000152601 no Homo_sapiens UUGCCA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.011593 +MBNL1 ENSG00000152601 no Homo_sapiens UUGCCC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.014166 +MBNL1 ENSG00000152601 no Homo_sapiens UUGCCG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01288 +MBNL1 ENSG00000152601 no Homo_sapiens UUGCCU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01288 +MBNL1 ENSG00000152601 no Homo_sapiens UUGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.030546 +MBNL1 ENSG00000152601 no Homo_sapiens UUGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.037326** +MBNL1 ENSG00000152601 no Homo_sapiens UUGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.033936 +MBNL1 ENSG00000152601 no Homo_sapiens UUGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.033936 +MBNL1 ENSG00000152601 no Homo_sapiens CGCC 4 SELEX C 20071745 SELEX ZF_CCCH M320_0.6a 0.082484 +MBNL1 ENSG00000152601 no Homo_sapiens UGCC 4 SELEX C 20071745 SELEX ZF_CCCH M320_0.6a 0.109936 +MBNL1 ENSG00000152601 no Homo_sapiens CGCU 4 SELEX C 20071745 SELEX ZF_CCCH M320_0.6a 0.329206 +MBNL1 ENSG00000152601 no Homo_sapiens UGCU 4 SELEX C 20071745 SELEX ZF_CCCH M320_0.6a 0.438774** +MBNL1 ENSG00000152601 no Homo_sapiens CCCGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UCCGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CUCGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UUCGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CCUGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UCUGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CUUGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UUUGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CCCGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UCCGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CUCGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UUCGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CCUGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UCUGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CUUGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UUUGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CCCGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UCCGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CUCGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UUCGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CCUGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UCUGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CUUGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UUUGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CCCGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UCCGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CUCGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UUCGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CCUGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UCUGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens CUUGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MBNL1 ENSG00000152601 no Homo_sapiens UUUGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** +MEC-8 WBGENE00003172 no Caenorhabditis_elegans AAGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.129744 +MEC-8 WBGENE00003172 no Caenorhabditis_elegans UAGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.102979 +MEC-8 WBGENE00003172 no Caenorhabditis_elegans GAGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.070759 +MEC-8 WBGENE00003172 no Caenorhabditis_elegans AUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.163262** +MEC-8 WBGENE00003172 no Caenorhabditis_elegans UUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.129583 +MEC-8 WBGENE00003172 no Caenorhabditis_elegans GUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.089038 +MEX-3 WBGENE00003229 no Caenorhabditis_elegans AGAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans UGAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans GGAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans AUAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans UUAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans GUAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans AGAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans UGAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans GGAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans AUAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans UUAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans GUAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans AGAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans UGAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans GGAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans AUAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans UUAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-3 WBGENE00003229 no Caenorhabditis_elegans GUAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** +MEX-5 WBGENE00003230 no Caenorhabditis_elegans UAAUAA 6 RNAcompete C 23846655 RNAcompete ZF_CCCH M038_0.6 0.484008** +MEX-5 WBGENE00003230 no Caenorhabditis_elegans UAAUAU 6 RNAcompete C 23846655 RNAcompete ZF_CCCH M038_0.6 0.411972 +MOD FBGN0002780 no Drosophila_melanogaster AAUGGAA 7 RNAcompete C 23846655 RNAcompete RRM M131_0.6 0.107211 +MOD FBGN0002780 no Drosophila_melanogaster AUUGGAA 7 RNAcompete C 23846655 RNAcompete RRM M131_0.6 0.047652 +MOD FBGN0002780 no Drosophila_melanogaster AGUGGAA 7 RNAcompete C 23846655 RNAcompete RRM M131_0.6 0.147703** +MPT5 YGL178W no Saccharomyces_cerevisiae CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 94 0.332237** +MPT5 YGL178W no Saccharomyces_cerevisiae CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 94 0.332237** +MPT5 YGL178W no Saccharomyces_cerevisiae CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 94 0.332237** +MPT5 YGL178W no Saccharomyces_cerevisiae UGUAACAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 9 0.247531** +MPT5 YGL178W no Saccharomyces_cerevisiae UGUAAUAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 9 0.247531** +MPT5 YGL178W no Saccharomyces_cerevisiae UGUAACAUUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 9 0.247531** +MPT5 YGL178W no Saccharomyces_cerevisiae UGUAAUAUUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 9 0.247531** +MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** +MSI FBGN0011666 no Drosophila_melanogaster AGUAGGA 7 RNAcompete C 23846655 RNAcompete RRM M096_0.6 0.082532 +MSI FBGN0011666 no Drosophila_melanogaster AGUAGGU 7 RNAcompete C 23846655 RNAcompete RRM M096_0.6 0.080141 +MSI FBGN0011666 no Drosophila_melanogaster AGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M096_0.6 0.241151** +MSI FBGN0011666 no Drosophila_melanogaster AGUAGGA 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.075452 +MSI FBGN0011666 no Drosophila_melanogaster AGUAGUA 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.072255 +MSI FBGN0011666 no Drosophila_melanogaster AGUAGGU 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.143423** +MSI FBGN0011666 no Drosophila_melanogaster AGUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.137346 +MSI FBGN0011666 no Drosophila_melanogaster AGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.049103 +MSI FBGN0011666 no Drosophila_melanogaster AGUAGUG 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.047023 +MSI1 ENSG00000135097 no Homo_sapiens UAGGAAG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.025563 +MSI1 ENSG00000135097 no Homo_sapiens UAGUAAG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.074179 +MSI1 ENSG00000135097 no Homo_sapiens UAGGUAG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.037227 +MSI1 ENSG00000135097 no Homo_sapiens UAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.108028** +MSI1 ENSG00000135097 no Homo_sapiens UAGGAGG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.014558 +MSI1 ENSG00000135097 no Homo_sapiens UAGUAGG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.042245 +MSI1 ENSG00000135097 no Homo_sapiens UAGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.021201 +MSI1 ENSG00000135097 no Homo_sapiens UAGUUGG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.061522 +MSI1 ENSG00000135097 no Homo_sapiens UAGUAAG 7 RNAcompete C 23846655 RNAcompete RRM M040_0.6 0.0992 +MSI1 ENSG00000135097 no Homo_sapiens UAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M040_0.6 0.123187** +MSI1 ENSG00000135097 no Homo_sapiens UAGUAGG 7 RNAcompete C 23846655 RNAcompete RRM M040_0.6 0.06609 +MSI1 ENSG00000135097 no Homo_sapiens UAGUUGG 7 RNAcompete C 23846655 RNAcompete RRM M040_0.6 0.082071 +MSI1 ENSMUSG00000054256 no Mus_musculus GUAGU 5 SOLUTION NMR PDB 22140116 SOLUTION NMR RRM 328 1.000000** +MSL5 YLR116W no Saccharomyces_cerevisiae AUACUAAC 8 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION KH;ZF_CCHC 487 1.000000** +MSL5 YLR116W no Saccharomyces_cerevisiae UACUAAC 7 UV cross-linking R 9182766 UV cross-linking KH;ZF_CCHC 168 1.000000** +MSL5 YLR116W no Saccharomyces_cerevisiae UACUAAC 7 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION KH;ZF_CCHC 403 1.000000** +MSL5 YLR116W no Saccharomyces_cerevisiae UACUAACA 8 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION KH;ZF_CCHC 387 1.000000** +MSL5 YLR116W no Saccharomyces_cerevisiae UAUACUAACAA 11 EMSA R 9701290 EMSA KH;ZF_CCHC 132 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae AAAAAAA 7 X-RAY DIFFRACTION PDB 25497230 X-RAY DIFFRACTION DEAD;HELICASE_C 411 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae CCGCC 5 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 477 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae CGGGCC 6 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 529 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae GCCC 4 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 507 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae GCGGG 5 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 561 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae GCGGGC 6 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 430 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae GGCCC 5 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 393 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae UUUUUU 6 X-RAY DIFFRACTION PDB 19748356 X-RAY DIFFRACTION DEAD;HELICASE_C 491 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae UUUUUUUU 8 X-RAY DIFFRACTION PDB 19748356 X-RAY DIFFRACTION DEAD;HELICASE_C 562 1.000000** +MSS116 YDR194C no Saccharomyces_cerevisiae_s288c UUUUUU 6 X-RAY DIFFRACTION PDB 21945532 X-RAY DIFFRACTION DEAD;HELICASE_C 534 1.000000** +MTR4 YJL050W no Saccharomyces_cerevisiae AAAAA 5 X-RAY DIFFRACTION PDB 20566885 X-RAY DIFFRACTION DEAD;DSHCT;HELICASE_C;RRNA_PROC_ARCH 470 1.000000** +MXT FBGN0031637 no Drosophila_melanogaster CAACGAA 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.219515** +MXT FBGN0031637 no Drosophila_melanogaster CGACGAA 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.132132 +MXT FBGN0031637 no Drosophila_melanogaster CAACGAC 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.173478 +MXT FBGN0031637 no Drosophila_melanogaster CGACGAC 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.104421 +MXT FBGN0031637 no Drosophila_melanogaster CAACGAG 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.10622 +MXT FBGN0031637 no Drosophila_melanogaster CGACGAG 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.063937 +NAB2 YGL122C no Saccharomyces_cerevisiae AAAAAG 6 genome-wide in vivo immunoprecipitation R 15703440 genome-wide in vivo immunoprecipitation NAB2 65 1.000000** +NAB3 YPL190C no Saccharomyces_cerevisiae UCUU 4 SOLUTION NMR PDB 21084293 SOLUTION NMR RRM 404 1.000000** +NAB3 YPL190C no Saccharomyces_cerevisiae UCUU 4 X-RAY DIFFRACTION PDB 20805243 X-RAY DIFFRACTION RRM 525 1.000000** +NCL M15825 no Mesocricetus_auratus AAUCCCGAAG 10 SOLUTION NMR PDB 11118222 SOLUTION NMR RRM 543 1.000000** +NCL M15825 no Mesocricetus_auratus UCCCGAG 7 SOLUTION NMR PDB 15033352 SOLUTION NMR RRM 496 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAACCGAG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAUCCGAG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGACCCGAG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAGCCGAG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAACCGUG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAUCCGUG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGACCCGUG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAGCCGUG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAACCGCG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAUCCGCG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGACCCGCG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAGCCGCG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAACCGGG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAUCCGGG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGACCCGGG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus AUUCGAGCCGGG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** +NCL N/A no Cricetulus_griseus UGCACAGAAGG 11 SELEX R 11376140 SELEX N\A 131_11376140.pfm 0.289475** +NCU02404 NCU02404 no Neurospora_crassa GGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.218509** +NCU02404 NCU02404 no Neurospora_crassa GGUGGAA 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.094655 +NCU02404 NCU02404 no Neurospora_crassa GGAGGAU 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.106096 +NCU02404 NCU02404 no Neurospora_crassa GGUGGAU 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.045959 +NCU02404 NCU02404 no Neurospora_crassa GGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.155402 +NCU02404 NCU02404 no Neurospora_crassa GGUGGAG 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.067318 +NCU08034 NCU08034 no Neurospora_crassa AGCACA 6 RNAcompete C 23846655 RNAcompete RRM M186_0.6 0.533261** +NCU08034 NCU08034 no Neurospora_crassa UGCACA 6 RNAcompete C 23846655 RNAcompete RRM M186_0.6 0.255027 +NELFE ENSG00000204356 no Homo_sapiens CUCUGGUUAG 10 NMR R 18303858 NMR RRM 6 1.000000** +NELFE ENSG00000204356 no Homo_sapiens GGUCUCUCUG 10 NMR R 18303858 NMR RRM 21 1.000000** +NELFE ENSG00000204356 no Homo_sapiens UCUGGCUAAC 10 NMR R 18303858 NMR RRM 122 1.000000** +NEMVEDRAFT_V1G104011 NEMVEDRAFT_V1G104011 no Nematostella_vectensis AGACACA 7 RNAcompete C 23846655 RNAcompete RRM M233_0.6 0.210350** +NEMVEDRAFT_V1G104011 NEMVEDRAFT_V1G104011 no Nematostella_vectensis AGAUACA 7 RNAcompete C 23846655 RNAcompete RRM M233_0.6 0.12764 +NEMVEDRAFT_V1G104011 NEMVEDRAFT_V1G104011 no Nematostella_vectensis AGACAGA 7 RNAcompete C 23846655 RNAcompete RRM M233_0.6 0.105847 +NEMVEDRAFT_V1G104011 NEMVEDRAFT_V1G104011 no Nematostella_vectensis AGAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M233_0.6 0.064228 +NFKB1 ENSMUSG00000028163 no Mus_musculus AGGU 4 X-RAY DIFFRACTION PDB 12886018 X-RAY DIFFRACTION ANK;DEATH;RHD 453 1.000000** +NFKB1 ENSMUSG00000028163 no Mus_musculus GAAA 4 X-RAY DIFFRACTION PDB 12886018 X-RAY DIFFRACTION ANK;DEATH;RHD 474 1.000000** +NFKB1 ENSMUSG00000028163 no Mus_musculus GGCG 4 X-RAY DIFFRACTION PDB 12886018 X-RAY DIFFRACTION ANK;DEATH;RHD 549 1.000000** +NONO ENSG00000147140 no Homo_sapiens AGGGA 5 SELEX C 9001221 SELEX RRM M307_0.6 0.876552** +NONO ENSG00000147140 no Homo_sapiens GAGAGGAAC 9 SELEX C 12403470 SELEX RRM 185 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens AACACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.111018 +NOVA1 ENSG00000139910 no Homo_sapiens ACCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.111018 +NOVA1 ENSG00000139910 no Homo_sapiens AGCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.111018 +NOVA1 ENSG00000139910 no Homo_sapiens AUCAAC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.083332 +NOVA1 ENSG00000139910 no Homo_sapiens AUCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.330854** +NOVA1 ENSG00000139910 no Homo_sapiens AUCAUC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.083332 +NOVA1 ENSG00000139910 no Homo_sapiens CAGUCAC 7 X-RAY DIFFRACTION PDB 21742260 X-RAY DIFFRACTION KH 440 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens CCCCCCC 7 Immunoblots and Filter Binding Assay. S 8558240 other KH 1127 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens GGGGGGG 7 Immunoblots and Filter Binding Assay. S 8558240 other KH 1128 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens UCACC 5 X-RAY DIFFRACTION PDB 21742260 X-RAY DIFFRACTION KH 459 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens UCAUUCAUUCAU 12 SELEX of 52nt random with recombinant protein. Consensus motif: UCAUYUCAUYUCAUY. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein. S 9154818 SELEX KH s94 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens UCAC 4 SELEX C 10811881 SELEX KH 99 0.495098** +NOVA1 ENSG00000139910 no Homo_sapiens UCAU 4 SELEX C 10811881 SELEX KH 99 0.495098** +NOVA1 ENSG00000139910 no Homo_sapiens UGUGU 5 NMR titrations using recombinant protein S 17655233 SOLUTION NMR KH 1132 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens UUCAG 5 NMR titrations using recombinant protein S 17655233 SOLUTION NMR KH 1131 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens UUCAU 5 NMR titrations using recombinant protein S 17655233 SOLUTION NMR KH 1130 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens UUUUUUU 7 Immunoblots and Filter Binding Assay. S 8558240 other KH 1129 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens CCAC 4 NMR R 17655233 NMR KH 64 0.165840** +NOVA1 ENSG00000139910 no Homo_sapiens UCAC 4 NMR R 17655233 NMR KH 64 0.165840** +NOVA1 ENSG00000139910 no Homo_sapiens CCAU 4 NMR R 17655233 NMR KH 64 0.165840** +NOVA1 ENSG00000139910 no Homo_sapiens UCAU 4 NMR R 17655233 NMR KH 64 0.165840** +NOVA1 ENSG00000139910 no Homo_sapiens CCAG 4 NMR R 17655233 NMR KH 64 0.165840** +NOVA1 ENSG00000139910 no Homo_sapiens UCAG 4 NMR R 17655233 NMR KH 64 0.165840** +NOVA2 ENSG00000104967 no Homo_sapiens AACACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.111018 +NOVA2 ENSG00000104967 no Homo_sapiens ACCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.111018 +NOVA2 ENSG00000104967 no Homo_sapiens AGCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.111018 +NOVA2 ENSG00000104967 no Homo_sapiens AUCAAC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.083332 +NOVA2 ENSG00000104967 no Homo_sapiens AUCAC 5 X-ray crystallography with recombinant protein. S 10676814 X-RAY DIFFRACTION KH 1133 1.000000** +NOVA2 ENSG00000104967 no Homo_sapiens AUCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.330854** +NOVA2 ENSG00000104967 no Homo_sapiens AUCAUC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.083332 +NOVA2 ENSG00000104967 no Homo_sapiens CCUAGAUCACC 11 X-RAY DIFFRACTION PDB 10676814 X-RAY DIFFRACTION KH 564 1.000000** +NOVA2 ENSG00000104967 no Homo_sapiens GAGACAU 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s29 0.332237** +NOVA2 ENSG00000104967 no Homo_sapiens GAGGCAU 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s29 0.332237** +NOVA2 ENSG00000104967 no Homo_sapiens GAGUCAU 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s29 0.332237** +NOVA2 ENSG00000104967 no Homo_sapiens GAUCACC 7 X-RAY DIFFRACTION PDB 10676814 X-RAY DIFFRACTION KH 492 1.000000** +NOVA2 ENSG00000104967 no Homo_sapiens GGGGGGG 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s96 1.000000** +NOVA2 ENSG00000104967 no Homo_sapiens UCAC 4 SELEX C 10811881 SELEX KH M325_0.6 1.000000** +NOVA2 ENSG00000104967 no Homo_sapiens UCAU 4 SELEX C 10811881 SELEX KH M325_0.6 1.000000** +NOVA2 ENSG00000104967 no Homo_sapiens UUUUUUU 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s95 1.000000** +NOVA2 ENSMUSG00000030411 no Mus_musculus CCAC 4 CLIP-seq C 18978773 genome-wide in vivo immunoprecipitation KH 179 0.247531** +NOVA2 ENSMUSG00000030411 no Mus_musculus UCAC 4 CLIP-seq C 18978773 genome-wide in vivo immunoprecipitation KH 179 0.247531** +NOVA2 ENSMUSG00000030411 no Mus_musculus CCAU 4 CLIP-seq C 18978773 genome-wide in vivo immunoprecipitation KH 179 0.247531** +NOVA2 ENSMUSG00000030411 no Mus_musculus UCAU 4 CLIP-seq C 18978773 genome-wide in vivo immunoprecipitation KH 179 0.247531** +NPL3 YDR432W no Saccharomyces_cerevisiae ACAUACA 7 RIP-chip C 15703440 genome-wide in vivo immunoprecipitation RRM 181 1.000000** +NPL3 YDR432W no Saccharomyces_cerevisiae UAUAUAA 7 RIP-chip C 15703440 genome-wide in vivo immunoprecipitation RRM 148 1.000000** +NUDT21 ENSG00000167005 no Homo_sapiens UGUA 4 X-RAY DIFFRACTION PDB 21295486 X-RAY DIFFRACTION NUDIX_2 499 1.000000** +NUDT21 ENSG00000167005 no Homo_sapiens UUGUA 5 X-RAY DIFFRACTION PDB 20479262 X-RAY DIFFRACTION NUDIX_2 575 1.000000** +NUDT21 ENSG00000167005 no Homo_sapiens UUGUA 5 X-RAY DIFFRACTION PDB 21295486 X-RAY DIFFRACTION NUDIX_2 420 1.000000** +NXF1 ENSG00000162231 no Homo_sapiens AACCUG 6 X-RAY DIFFRACTION PDB 21822283 X-RAY DIFFRACTION LRR_1;NTF2;TAP-RNA_BIND;TAP_C 418 1.000000** +NXF1 ENSG00000162231 no Homo_sapiens AGAC 4 X-RAY DIFFRACTION PDB 21822283 X-RAY DIFFRACTION LRR_1;NTF2;TAP-RNA_BIND;TAP_C 454 1.000000** +NXF1 ENSG00000162231 no Homo_sapiens CCUG 4 X-RAY DIFFRACTION PDB 21822283 X-RAY DIFFRACTION LRR_1;NTF2;TAP-RNA_BIND;TAP_C 572 1.000000** +OAS1 ENSG00000089127 no Homo_sapiens AAAGC 5 X-RAY DIFFRACTION PDB 23319625 X-RAY DIFFRACTION OAS1_C;NTP_TRANSF_2 485 1.000000** +OAS1 ENSG00000089127 no Homo_sapiens GCAUAA 6 X-RAY DIFFRACTION PDB 23319625 X-RAY DIFFRACTION OAS1_C;NTP_TRANSF_2 535 1.000000** +OAS1 ENSG00000089127 no Homo_sapiens UUGA 4 X-RAY DIFFRACTION PDB 23319625 X-RAY DIFFRACTION OAS1_C;NTP_TRANSF_2 385 1.000000** +ORB2 FBGN0264307 no Drosophila_melanogaster GUUUGGG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.119009** +ORB2 FBGN0264307 no Drosophila_melanogaster UUUUGGG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.117383 +ORB2 FBGN0264307 no Drosophila_melanogaster GUUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.037622 +ORB2 FBGN0264307 no Drosophila_melanogaster UUUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.037108 +ORB2 FBGN0264307 no Drosophila_melanogaster GUUUGUG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.071075 +ORB2 FBGN0264307 no Drosophila_melanogaster UUUUGUG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.070104 +ORB2 FBGN0264307 no Drosophila_melanogaster GUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.022469 +ORB2 FBGN0264307 no Drosophila_melanogaster UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.022162 +ORB2 FBGN0264307 no Drosophila_melanogaster GUUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.03144 +ORB2 FBGN0264307 no Drosophila_melanogaster UUUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.03101 +ORB2 FBGN0264307 no Drosophila_melanogaster GUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.009939 +ORB2 FBGN0264307 no Drosophila_melanogaster UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.009803 +ORB2 FBGN0264307 no Drosophila_melanogaster GUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.018776 +ORB2 FBGN0264307 no Drosophila_melanogaster UUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.01852 +ORB2 FBGN0264307 no Drosophila_melanogaster GUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.005936 +ORB2 FBGN0264307 no Drosophila_melanogaster UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.005855 +PABP FBGN0261619 no Drosophila_melanogaster GAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.053297 +PABP FBGN0261619 no Drosophila_melanogaster GAAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.075958 +PABP FBGN0261619 no Drosophila_melanogaster GAAAACA 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.038905 +PABP FBGN0261619 no Drosophila_melanogaster GAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.097392 +PABP FBGN0261619 no Drosophila_melanogaster GAAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.138802** +PABP FBGN0261619 no Drosophila_melanogaster GAAAACC 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.071094 +PABP FBGN0261619 no Drosophila_melanogaster GAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.079382 +PABP FBGN0261619 no Drosophila_melanogaster GAAAAUG 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.113134 +PABP FBGN0261619 no Drosophila_melanogaster GAAAACG 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.057947 +PABP2 LMJF.35.4130 no Leishmania_major AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M218_0.6 0.172821** +PABP2 LMJF.35.4130 no Leishmania_major AAACAAA 7 RNAcompete C 23846655 RNAcompete RRM M218_0.6 0.166137 +PABPC1 ENSG00000070756 no Homo_sapiens AAAAA 5 SELEX C 7908267 SELEX RRM M275_0.6 1.000000** +PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAA 7 X-RAY DIFFRACTION PDB 10499800 X-RAY DIFFRACTION RRM 452 1.000000** +PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAA 7 X-RAY DIFFRACTION PDB 23041282 X-RAY DIFFRACTION RRM 480 1.000000** +PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAAA 8 X-RAY DIFFRACTION PDB 10499800 X-RAY DIFFRACTION RRM 416 1.000000** +PABPC1 ENSG00000070756 no Homo_sapiens ACAAACA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.023946 +PABPC1 ENSG00000070756 no Homo_sapiens ACUAACA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.035081 +PABPC1 ENSG00000070756 no Homo_sapiens ACGAACA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.023946 +PABPC1 ENSG00000070756 no Homo_sapiens ACAAAUA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.047054 +PABPC1 ENSG00000070756 no Homo_sapiens ACUAAUA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.068934** +PABPC1 ENSG00000070756 no Homo_sapiens ACGAAUA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.047054 +PABPC1 ENSG00000070756 no Homo_sapiens ACAAACC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.023946 +PABPC1 ENSG00000070756 no Homo_sapiens ACUAACC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.035081 +PABPC1 ENSG00000070756 no Homo_sapiens ACGAACC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.023946 +PABPC1 ENSG00000070756 no Homo_sapiens ACAAAUC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.047054 +PABPC1 ENSG00000070756 no Homo_sapiens ACUAAUC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.068934** +PABPC1 ENSG00000070756 no Homo_sapiens ACGAAUC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.047054 +PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M146_0.6 0.131246 +PABPC1 ENSG00000070756 no Homo_sapiens AGAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M146_0.6 0.208479** +PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M146_0.6 0.038875 +PABPC1 ENSG00000070756 no Homo_sapiens AGAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M146_0.6 0.061751 +PABPC3 ENSG00000151846 no Homo_sapiens AAAAACA 7 RNAcompete C 23846655 RNAcompete RRM M144_0.6 0.069717 +PABPC3 ENSG00000151846 no Homo_sapiens GAAAACA 7 RNAcompete C 23846655 RNAcompete RRM M144_0.6 0.150436 +PABPC3 ENSG00000151846 no Homo_sapiens AAAAACC 7 RNAcompete C 23846655 RNAcompete RRM M144_0.6 0.116268 +PABPC3 ENSG00000151846 no Homo_sapiens GAAAACC 7 RNAcompete C 23846655 RNAcompete RRM M144_0.6 0.250885** +PABPC4 ENSG00000090621 no Homo_sapiens AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M042_0.6 0.287831** +PABPC4 ENSG00000090621 no Homo_sapiens AAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M042_0.6 0.086233 +PABPC5 ENSG00000174740 no Homo_sapiens AGAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M162_0.6 0.176616** +PABPC5 ENSG00000174740 no Homo_sapiens AGAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M162_0.6 0.08682 +PABPC5 ENSG00000174740 no Homo_sapiens AGAAAGU 7 RNAcompete C 23846655 RNAcompete RRM M162_0.6 0.07471 +PABPN1 ENSG00000100836 no Homo_sapiens AAAAGA 6 RNAcompete C 23846655 RNAcompete RRM M148_0.6 0.198788 +PABPN1 ENSG00000100836 no Homo_sapiens AGAAGA 6 RNAcompete C 23846655 RNAcompete RRM M148_0.6 0.491566** +PAP1 YKR002W no Saccharomyces_cerevisiae AAAA 4 X-RAY DIFFRACTION PDB 17850751 X-RAY DIFFRACTION PAP_RNA_BIND 349 1.000000** +PAPI FBGN0031401 no Drosophila_melanogaster GGUGUGU 7 RNAcompete C 23846655 RNAcompete KH M011_0.6 0.063669 +PAPI FBGN0031401 no Drosophila_melanogaster UGUGUGU 7 RNAcompete C 23846655 RNAcompete KH M011_0.6 0.258946** +PAPI FBGN0031401 no Drosophila_melanogaster GGUUUGU 7 RNAcompete C 23846655 RNAcompete KH M011_0.6 0.021683 +PAPI FBGN0031401 no Drosophila_melanogaster UGUUUGU 7 RNAcompete C 23846655 RNAcompete KH M011_0.6 0.088184 +PCBP1 ENSG00000169564 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 771 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens AAACCAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 756 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens AAAUUACC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 758 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens AAAUUCAC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 759 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens AAAUUCCA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 757 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens AAAUUCCC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 750 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens ACAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 752 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens ACCUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 755 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CAAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 753 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 754 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCCCACCCUCUU 12 EMSA R 11827469 EMSA KH 93 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts. S 17928403 UV cross-linking;EMSA KH 776 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 769 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH KH 774 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 UV cross-linking. Cell-free translation of different mRNAs. S 9160751 UV cross-linking KH 773 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 763 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCCUCCC 7 Mutational analysis, UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 UV cross-linking KH 748 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCCUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 751 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCCUUCCC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 749 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens CCAAACC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.029729 +PCBP1 ENSG00000169564 no Homo_sapiens CCUAACC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.059686 +PCBP1 ENSG00000169564 no Homo_sapiens CCAUACC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.04748 +PCBP1 ENSG00000169564 no Homo_sapiens CCUUACC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.095327 +PCBP1 ENSG00000169564 no Homo_sapiens CCAAUCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.031596 +PCBP1 ENSG00000169564 no Homo_sapiens CCUAUCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.063435 +PCBP1 ENSG00000169564 no Homo_sapiens CCAUUCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.050463 +PCBP1 ENSG00000169564 no Homo_sapiens CCUUUCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.101314** +PCBP1 ENSG00000169564 no Homo_sapiens CCAACCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.0148 +PCBP1 ENSG00000169564 no Homo_sapiens CCUACCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.029714 +PCBP1 ENSG00000169564 no Homo_sapiens CCAUCCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.023637 +PCBP1 ENSG00000169564 no Homo_sapiens CCUUCCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.047457 +PCBP1 ENSG00000169564 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 770 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other KH 762 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens GGGGGGG 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 764 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens UCCCCAA 7 UV cross-linking, Chemical shift mapping (NMR) with recombinant protein. S 16854432 UV cross-linking;SOLUTION NMR KH 760 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens UUAGAG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 766 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens UUAGGA 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 767 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens UUAGGG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 768 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 772 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens UUUUUUU 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH KH 775 1.000000** +PCBP1 ENSG00000169564 no Homo_sapiens UUUUUUU 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 765 1.000000** +PCBP1 ENSMUSG00000051695 no Mus_musculus CCUUCC 6 RNAcompete C 23846655 RNAcompete KH M207_0.6 0.065373 +PCBP1 ENSMUSG00000051695 no Mus_musculus CUUUCC 6 RNAcompete C 23846655 RNAcompete KH M207_0.6 0.226796** +PCBP2 ENSDARG00000013184 no Danio_rerio AAUCCC 6 RNAcompete C 23846655 RNAcompete KH M211_0.6 0.037973 +PCBP2 ENSDARG00000013184 no Danio_rerio UAUCCC 6 RNAcompete C 23846655 RNAcompete KH M211_0.6 0.111538 +PCBP2 ENSDARG00000013184 no Danio_rerio AUUCCC 6 RNAcompete C 23846655 RNAcompete KH M211_0.6 0.054143 +PCBP2 ENSDARG00000013184 no Danio_rerio UUUCCC 6 RNAcompete C 23846655 RNAcompete KH M211_0.6 0.159036** +PCBP2 ENSG00000197111 no Homo_sapiens AAACCAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 786 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens AAAUUACC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 788 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens AAAUUCAC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 789 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens AAAUUCCA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 787 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens AAAUUCCC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 780 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens ACAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 782 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens ACCUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 785 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CAAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 783 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 784 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCAUUC 6 Protein affinity purification with HeLa nuclear extract, mass spectrometry, western blot. S 17451601 other KH 777 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 795 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCC 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH KH 797 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCC 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 791 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCCU 4 X-RAY DIFFRACTION PDB 17526645 X-RAY DIFFRACTION KH 334 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCCUAA 6 X-RAY DIFFRACTION PDB 17526645 X-RAY DIFFRACTION KH 370 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCCUCCC 7 Mutational analysis, UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 UV cross-linking KH 778 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCCUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 781 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCCUUCCC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 779 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCA 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.006211 +PCBP2 ENSG00000197111 no Homo_sapiens CCUCCCA 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.012776 +PCBP2 ENSG00000197111 no Homo_sapiens CCCUCCA 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.01115 +PCBP2 ENSG00000197111 no Homo_sapiens CCUUCCA 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.022935 +PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCU 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.005838 +PCBP2 ENSG00000197111 no Homo_sapiens CCUCCCU 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.012009 +PCBP2 ENSG00000197111 no Homo_sapiens CCCUCCU 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.010481 +PCBP2 ENSG00000197111 no Homo_sapiens CCUUCCU 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.021558 +PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCC 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.024594 +PCBP2 ENSG00000197111 no Homo_sapiens CCUCCCC 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.050587 +PCBP2 ENSG00000197111 no Homo_sapiens CCCUCCC 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.044151 +PCBP2 ENSG00000197111 no Homo_sapiens CCUUCCC 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.090813** +PCBP2 ENSG00000197111 no Homo_sapiens CUAACCCUAA 10 NMR R 15331611 NMR KH 156 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens CUAACCCUAA 10 NMR using recombinant protein S 15331611 SOLUTION NMR KH 800 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 796 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other KH 790 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens UCCCCA 6 NMR R 15331611 NMR KH 166 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens UCCCCA 6 NMR using recombinant protein S 15331611 SOLUTION NMR KH 799 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens UUAGAG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 792 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens UUAGGA 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 793 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens UUAGGG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 794 1.000000** +PCBP2 ENSG00000197111 no Homo_sapiens UUUUUUU 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH KH 798 1.000000** +PCBP3 ENSMUSG00000001120 no Mus_musculus UUUCCC 6 RNAcompete C 23846655 RNAcompete KH M188_0.6 0.243852** +PCBP3 ENSMUSG00000001120 no Mus_musculus UUUUCC 6 RNAcompete C 23846655 RNAcompete KH M188_0.6 0.105947 +PF10_0068 PF10_0068 no Plasmodium_falciparum GGAGGA 6 RNAcompete C 23846655 RNAcompete RRM M180_0.6 0.429046** +PF10_0068 PF10_0068 no Plasmodium_falciparum GGUGGA 6 RNAcompete C 23846655 RNAcompete RRM M180_0.6 0.210428 +PF10_0214 PF10_0214 no Plasmodium_falciparum AUACCGA 7 RNAcompete C 23846655 RNAcompete RRM M208_0.6 0.131787 +PF10_0214 PF10_0214 no Plasmodium_falciparum UUACCGA 7 RNAcompete C 23846655 RNAcompete RRM M208_0.6 0.078749 +PF10_0214 PF10_0214 no Plasmodium_falciparum AUUCCGA 7 RNAcompete C 23846655 RNAcompete RRM M208_0.6 0.215099** +PF10_0214 PF10_0214 no Plasmodium_falciparum UUUCCGA 7 RNAcompete C 23846655 RNAcompete RRM M208_0.6 0.128533 +PF13_0315 PF13_0315 no Plasmodium_falciparum GUACAUA 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.043411 +PF13_0315 PF13_0315 no Plasmodium_falciparum UUACAUA 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.134941 +PF13_0315 PF13_0315 no Plasmodium_falciparum GUGCAUA 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.019358 +PF13_0315 PF13_0315 no Plasmodium_falciparum UUGCAUA 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.060171 +PF13_0315 PF13_0315 no Plasmodium_falciparum GUACAUU 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.029844 +PF13_0315 PF13_0315 no Plasmodium_falciparum UUACAUU 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.092767 +PF13_0315 PF13_0315 no Plasmodium_falciparum GUGCAUU 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.013308 +PF13_0315 PF13_0315 no Plasmodium_falciparum UUGCAUU 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.041366 +PF13_0315 PF13_0315 no Plasmodium_falciparum GUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.062547 +PF13_0315 PF13_0315 no Plasmodium_falciparum UUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.194422** +PF13_0315 PF13_0315 no Plasmodium_falciparum GUGCAUG 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.02789 +PF13_0315 PF13_0315 no Plasmodium_falciparum UUGCAUG 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.086694 +PFF0320C PFF0320C no Plasmodium_falciparum ACUAAAC 7 RNAcompete C 23846655 RNAcompete RRM M203_0.6 0.152437** +PFF0320C PFF0320C no Plasmodium_falciparum ACUAAUC 7 RNAcompete C 23846655 RNAcompete RRM M203_0.6 0.097556 +PFI1435W PFI1435W no Plasmodium_falciparum UGUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M182_0.6 0.076642 +PFI1435W PFI1435W no Plasmodium_falciparum UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M182_0.6 0.188183** +PFI1435W PFI1435W no Plasmodium_falciparum UGUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M182_0.6 0.043791 +PFI1435W PFI1435W no Plasmodium_falciparum UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M182_0.6 0.107524 +PFI1695C PFI1695C no Plasmodium_falciparum CCAGCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.119252** +PFI1695C PFI1695C no Plasmodium_falciparum CUAGCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.091787 +PFI1695C PFI1695C no Plasmodium_falciparum CCUGCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.118612 +PFI1695C PFI1695C no Plasmodium_falciparum CUUGCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.091294 +PFI1695C PFI1695C no Plasmodium_falciparum CCAUCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.039806 +PFI1695C PFI1695C no Plasmodium_falciparum CUAUCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.030639 +PFI1695C PFI1695C no Plasmodium_falciparum CCUUCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.039593 +PFI1695C PFI1695C no Plasmodium_falciparum CUUUCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.030474 +PHAX ENSG00000164902 no Homo_sapiens AUCG 4 SOLUTION NMR PDB 20430857 SOLUTION NMR RNA_GG_BIND 472 1.000000** +PIWIL1 ENSG00000125207 no Homo_sapiens GCUU 4 X-RAY DIFFRACTION PDB 21193640 X-RAY DIFFRACTION GAGE;PAZ;PIWI 508 1.000000** +PIWIL1 ENSMUSG00000029423 no Mus_musculus CCGACU 6 SOLUTION NMR PDB 21237665 SOLUTION NMR PAZ;PIWI 415 1.000000** +POS-1 WBGENE00004078 no Caenorhabditis_elegans UUAUUAUUUGUU 12 EMSA R 18952820 EMSA ZF_CCCH 134 1.000000** +PPIE ENSG00000084072 no Homo_sapiens AAAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 45 1.000000** +PPIE ENSG00000084072 no Homo_sapiens AAUAAA 6 NMR R 20460131 NMR RRM;PRO_ISOMERASE 36 1.000000** +PPIE ENSG00000084072 no Homo_sapiens AAUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 20 1.000000** +PPIE ENSG00000084072 no Homo_sapiens UUUUUU 6 single RNA affinity purification R 18258190 single RNA affinity purification RRM;PRO_ISOMERASE 89 1.000000** +PPIE ENSG00000084072 no Homo_sapiens AAAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAAUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAAUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUAUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUAUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAUUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAUUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUUUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUUUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAAAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAAAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUAAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUAAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAUAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAUAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUUAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUUAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAAUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAAUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUAUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUAUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAUUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAUUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUUUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUUUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAAAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAAAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUAAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUAAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAUAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAUAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUUAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUUAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAAUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAAUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUAUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUAUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAUUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAUUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUUUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUUUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAAAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAAAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUAAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUAAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAUAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAUAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUUAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUUAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAAUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAAUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUAUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUAUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AAUUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UAUUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens AUUUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPIE ENSG00000084072 no Homo_sapiens UUUUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** +PPR10 GRMZM2G177169 no Zea_mays AUUUC 5 X-RAY DIFFRACTION PDB 24162847 X-RAY DIFFRACTION PPR 505 1.000000** +PPR10 GRMZM2G177169 no Zea_mays GUAUU 5 X-RAY DIFFRACTION PDB 24162847 X-RAY DIFFRACTION PPR 331 1.000000** +PPR10 GRMZM2G177169 no Zea_mays GUAUU 5 X-RAY DIFFRACTION PDB 25231995 X-RAY DIFFRACTION PPR 449 1.000000** +PPR10 GRMZM2G177169 no Zea_mays UAUUUC 6 X-RAY DIFFRACTION PDB 24162847 X-RAY DIFFRACTION PPR 500 1.000000** +PPR10 GRMZM2G177169 no Zea_mays UAUUUC 6 X-RAY DIFFRACTION PDB 25231995 X-RAY DIFFRACTION PPR 373 1.000000** +PPRC1 ENSG00000148840 no Homo_sapiens CCGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.036737 +PPRC1 ENSG00000148840 no Homo_sapiens GCGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.047364 +PPRC1 ENSG00000148840 no Homo_sapiens CGGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.019061 +PPRC1 ENSG00000148840 no Homo_sapiens GGGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.024574 +PPRC1 ENSG00000148840 no Homo_sapiens CCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.057248 +PPRC1 ENSG00000148840 no Homo_sapiens GCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.073808** +PPRC1 ENSG00000148840 no Homo_sapiens CGGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.029703 +PPRC1 ENSG00000148840 no Homo_sapiens GGGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.038295 +PRKRA-B XB-GENE-940708 no Xenopus_laevis CGCG 4 X-RAY DIFFRACTION PDB 9857205 X-RAY DIFFRACTION DSRM 483 1.000000** +PRKRA-B XB-GENE-940708 no Xenopus_laevis GCGC 4 X-RAY DIFFRACTION PDB 9857205 X-RAY DIFFRACTION DSRM 382 1.000000** +PRNP ENSBTAG00000027937 no Bos_taurus GAGGA 5 SOLUTION NMR PDB 23180780 SOLUTION NMR PRION 421 1.000000** +PRP24 YMR268C no Saccharomyces_cerevisiae AAACA 5 X-RAY DIFFRACTION PDB 24837192 X-RAY DIFFRACTION LSM_INTERACT;RRM 552 1.000000** +PRP24 YMR268C no Saccharomyces_cerevisiae AGAGAU 6 SOLUTION NMR PDB 20181740 SOLUTION NMR LSM_INTERACT;RRM 338 1.000000** +PRP24 YMR268C no Saccharomyces_cerevisiae UACAGAG 7 X-RAY DIFFRACTION PDB 24837192 X-RAY DIFFRACTION LSM_INTERACT;RRM 383 1.000000** +PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 +PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000019 +PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000102 +PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000051 +PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000033 +PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000016 +PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000089 +PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000045 +PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000019 +PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000009 +PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000051 +PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000026 +PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000016 +PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000008 +PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000045 +PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000022 +PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000027 +PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000013 +PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000073 +PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 +PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000023 +PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000012 +PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000064 +PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000032 +PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000013 +PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000007 +PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 +PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000018 +PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000012 +PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000006 +PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000032 +PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000016 +PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000074 +PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 +PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000204** +PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000102 +PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000065 +PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000033 +PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000179 +PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000089 +PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 +PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000019 +PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000102 +PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000051 +PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000033 +PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000016 +PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000089 +PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000045 +PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000053 +PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000027 +PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000146 +PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000073 +PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000046 +PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000023 +PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000128 +PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000064 +PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000027 +PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000013 +PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000073 +PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 +PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000023 +PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000012 +PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000064 +PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000032 +PTBP1 ENSG00000011304 no Homo_sapiens AUCUUC 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.04703 +PTBP1 ENSG00000011304 no Homo_sapiens CCCCCCC 7 Fluorescence spectroscopy with recombinant protein. S 9305981 other PTBP1 1016 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CCUCUUU 7 Mutagenesis, in vivo splicing assay S 21518792 other PTBP1 1003 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CCUUCCUU 8 Mutational analysis. S 16260624 other PTBP1 1002 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CCUUUCCC 8 EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 EMSA;UV cross-linking PTBP1 996 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCCAUCUU 9 EMSA with recombinant protein. RNA footprinting. S 16431980 EMSA PTBP1 994 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCU 4 SOLUTION NMR PDB 16179478 SOLUTION NMR RRM 489 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCUC 5 in vitro RNA pulldown R 19861426 other RRM 8 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 Immunodepletion, UV crosslink in WERI-1 and HeLa extracts, immunoprecipitation, immunoblot. S 10911989 UV cross-linking PTBP1 1006 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 NMR R 11788707 NMR RRM 133 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 NMR, EMSA with recombinant protein S 16179478 SOLUTION NMR PTBP1 1025 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA PTBP1 1008 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 SOLUTION NMR PDB 16179478 SOLUTION NMR RRM 380 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 UV crosslink in HeLa and WERI-1 nuclear extracts, competition assay, immunoprecipitation. EMSA supershift in HeLa nuclear extracts. S 9234723 UV cross-linking PTBP1 1004 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUCUUA 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.124689 +PTBP1 ENSG00000011304 no Homo_sapiens CUCUUC 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.186723** +PTBP1 ENSG00000011304 no Homo_sapiens CUCUUG 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.124689 +PTBP1 ENSG00000011304 no Homo_sapiens CUCUUU 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.062655 +PTBP1 ENSG00000011304 no Homo_sapiens CUCUUU 6 UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 UV cross-linking;other PTBP1 1000 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUAA 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUUA 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUCA 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUGA 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUAU 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUUU 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUCU 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUGU 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUAC 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUUC 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUCC 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUGC 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUAG 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUUG 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUCG 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUGG 4 NMR R 16179478 NMR RRM 165 0.062500** +PTBP1 ENSG00000011304 no Homo_sapiens CUUC 4 NMR R 11788707 NMR RRM 11 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUUCUCUCU 9 Chemical shift mapping (NMR) using recombinant protein S 15341728 SOLUTION NMR PTBP1 1024 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUUCUCUCU 9 NMR R 15341728 NMR RRM 25 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUUCUCUCU 9 UV-crosslink, EMSA S 15840818 UV cross-linking;EMSA PTBP1 1009 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CUUUCUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.004545 +PTBP1 ENSG00000011304 no Homo_sapiens GGGGGGG 7 Fluorescence spectroscopy with recombinant protein. S 9305981 other PTBP1 1017 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens GUCUUA 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.031405 +PTBP1 ENSG00000011304 no Homo_sapiens GUCUUU 6 Mutagenesis, Pull down assay and Western blot with HeLa nucelar extract. S 19016857 other PTBP1 999 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens GUCUUU 6 UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 UV cross-linking;other PTBP1 1001 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens ACUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.022113 +PTBP1 ENSG00000011304 no Homo_sapiens UCUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.014343 +PTBP1 ENSG00000011304 no Homo_sapiens CCUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.049196 +PTBP1 ENSG00000011304 no Homo_sapiens AUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.07111 +PTBP1 ENSG00000011304 no Homo_sapiens UUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.046122 +PTBP1 ENSG00000011304 no Homo_sapiens CUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.158201** +PTBP1 ENSG00000011304 no Homo_sapiens ACUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.009613 +PTBP1 ENSG00000011304 no Homo_sapiens UCUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.006235 +PTBP1 ENSG00000011304 no Homo_sapiens CCUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.021386 +PTBP1 ENSG00000011304 no Homo_sapiens AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.030913 +PTBP1 ENSG00000011304 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.02005 +PTBP1 ENSG00000011304 no Homo_sapiens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.068773 +PTBP1 ENSG00000011304 no Homo_sapiens UAGCUGUG 8 EMSA with recombinant protein. RNA footprinting. S 16431980 EMSA PTBP1 993 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCCUCUUC 8 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1022 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCCUCUUC 8 NMR R 11788707 NMR RRM 105 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUAUCU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.016053 +PTBP1 ENSG00000011304 no Homo_sapiens UCUCU 5 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1021 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUCU 5 NMR R 11788707 NMR RRM 117 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUCU 5 SOLUTION NMR PDB 16179478 SOLUTION NMR RRM 539 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUCUC 6 UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts. S 11931771 UV cross-linking PTBP1 992 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUU 4 NMR R 11788707 NMR RRM 51 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUU 4 SELEX C 9214659 SELEX RRM 31 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUC 5 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1019 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUC 5 NMR R 11788707 NMR RRM 136 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUCU 8 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1023 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUCU 8 NMR R 11788707 NMR RRM 71 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUCUCUU 11 UV cross-link with recombinant protein and with HeLa nuclear extract containing increasing protein concentrations. Mutation analysis. S 12649496 UV cross-linking PTBP1 1011 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUCUUC 10 NMR R 11788707 NMR RRM 100 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUU 7 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s80 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUU 7 in vitro splicing in HeLa nuclear extract. S 9436911 other PTBP1 1014 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUU 5 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1020 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUU 5 NMR R 11788707 NMR RRM 59 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUUCU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.031948 +PTBP1 ENSG00000011304 no Homo_sapiens UUACUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.018045 +PTBP1 ENSG00000011304 no Homo_sapiens UUAUUUUUCCCC 12 EMSA, UV crosslink, immunoprecipitation with recombinant protein. S 9858533 EMSA;UV cross-linking PTBP1 995 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUCUCUUUUCU 11 EMSA with recombinant protein. S 20080103 EMSA PTBP1 1013 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUCUCUUUUCU 11 EMSA with recombinant protein. RNA footprinting. S 16431980 EMSA PTBP1 1012 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUCUUC 6 Mutagenesis, Pull down assay and Western blot with HeLa nucelar extract. S 19016857 other PTBP1 998 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUCUUC 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.093595 +PTBP1 ENSG00000011304 no Homo_sapiens UUCUUG 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.0625 +PTBP1 ENSG00000011304 no Homo_sapiens UUCUUU 6 Mutagenesis, Pull down assay and Western blot with HeLa nucelar extract. S 19016857 other PTBP1 997 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUUCUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.071644** +PTBP1 ENSG00000011304 no Homo_sapiens UUUCUUU 7 UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts. S 11931771 UV cross-linking PTBP1 991 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUUUUUU 7 Fluorescence spectroscopy with recombinant protein. S 9305981 other PTBP1 1018 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUUUUUU 7 RNA affinity chromatography confirmed by UV crosslink and Western blot using HeLa nuclear extracts. S 8449401 RNA affinity chromatography/purification;UV cross-linking PTBP1 1015 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens CCUAA 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUAA 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUUA 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUA 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUCA 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUCA 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUGA 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUGA 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUAU 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUAU 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUUU 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUU 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUCU 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUCU 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUGU 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUGU 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUAC 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUAC 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUUC 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUC 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUCC 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUCC 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUGC 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUGC 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUAG 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUAG 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUUG 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUUG 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUCG 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUCG 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens CCUGG 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP1 ENSG00000011304 no Homo_sapiens UCUGG 5 NMR R 16179478 NMR RRM 143 0.031230** +PTBP2 ENSG00000117569 no Homo_sapiens CUCUCU 6 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA RRM 1134 1.000000** +PUF-7 WBGENE00004243 no Caenorhabditis_elegans UGUAUC 6 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION PUF 394 1.000000** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAAAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUAAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACAAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGAAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAUAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUUAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACUAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGUAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAACAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUCAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACCAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGCAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAAAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUAAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACAAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGAAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAUAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUUAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACUAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGUAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAACAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUCAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACCAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGCAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAAAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUAAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACAAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGAAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAUAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUUAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACUAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGUAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAACAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUCAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACCAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGCAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** +PUF2 YPR042C no Saccharomyces_cerevisiae CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 62 0.332237** +PUF2 YPR042C no Saccharomyces_cerevisiae CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 62 0.332237** +PUF2 YPR042C no Saccharomyces_cerevisiae CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 62 0.332237** +PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 0 0.332237** +PUF3 YLL013C no Saccharomyces_cerevisiae CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 0 0.332237** +PUF3 YLL013C no Saccharomyces_cerevisiae CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 0 0.332237** +PUF3 YLL013C no Saccharomyces_cerevisiae CAUGUAAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** +PUF3 YLL013C no Saccharomyces_cerevisiae CUUGUAAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** +PUF3 YLL013C no Saccharomyces_cerevisiae CCUGUAAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** +PUF3 YLL013C no Saccharomyces_cerevisiae CAUGUAUAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** +PUF3 YLL013C no Saccharomyces_cerevisiae CUUGUAUAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** +PUF3 YLL013C no Saccharomyces_cerevisiae CCUGUAUAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** +PUF3 YLL013C no Saccharomyces_cerevisiae UGUAAAUA 8 X-RAY DIFFRACTION PDB 19918084 X-RAY DIFFRACTION PUF 497 1.000000** +PUF3 YLL013C no Saccharomyces_cerevisiae UGUAUAUA 8 X-RAY DIFFRACTION PDB 19918084 X-RAY DIFFRACTION PUF 360 1.000000** +PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 10 0.332237** +PUF4 YGL014W no Saccharomyces_cerevisiae CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 10 0.332237** +PUF4 YGL014W no Saccharomyces_cerevisiae CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 10 0.332237** +PUF4 YGL014W no Saccharomyces_cerevisiae UGUAU 5 X-RAY DIFFRACTION PDB 22467831 X-RAY DIFFRACTION PUF 460 1.000000** +PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAAUA 9 EMSA R 18327269 EMSA PUF 55 1.000000** +PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUACUA 9 EMSA R 18327269 EMSA PUF 16 1.000000** +PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAGUA 9 EMSA R 18327269 EMSA PUF 103 1.000000** +PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUA 8 EMSA R 18327269 EMSA PUF 98 1.000000** +PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUA 8 X-RAY DIFFRACTION PDB 18327269 X-RAY DIFFRACTION PUF 550 1.000000** +PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUUA 9 EMSA R 18327269 EMSA PUF 101 1.000000** +PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUUA 9 X-RAY DIFFRACTION PDB 18327269 X-RAY DIFFRACTION PUF 490 1.000000** +PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUUUA 10 EMSA R 18327269 EMSA PUF 22 1.000000** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** +PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** +PUF68 FBGN0028577 no Drosophila_melanogaster UAAAAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.002074 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUAAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.007167 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.002011 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUUAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.006949 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.006063 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUGAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.020951 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAAGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.001038 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUAGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003588 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAUGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.001007 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUUGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003479 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003036 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUGGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.01049 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAAAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.007214 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUAAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.024931 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAUAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.006995 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUUAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.024174 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.021091 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUGAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.072883** +PUF68 FBGN0028577 no Drosophila_melanogaster UAAAGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003612 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.012483 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAUGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003503 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUUGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.012104 +PUF68 FBGN0028577 no Drosophila_melanogaster UAAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.01056 +PUF68 FBGN0028577 no Drosophila_melanogaster UAUGGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.036492 +PUM FBGN0003165 no Drosophila_melanogaster AAUUGUACAUAA 12 fluorescence methods R 19540345 other PUF 154 1.000000** +PUM FBGN0003165 no Drosophila_melanogaster CUUGUAGAUAA 11 fluorescence methods R 19540345 other PUF 48 1.000000** +PUM FBGN0003165 no Drosophila_melanogaster UGUAAAG 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.075198 +PUM FBGN0003165 no Drosophila_melanogaster UGUAUAG 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.076259 +PUM FBGN0003165 no Drosophila_melanogaster UGUACAG 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.231810** +PUM FBGN0003165 no Drosophila_melanogaster UGUAAAU 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.074485 +PUM FBGN0003165 no Drosophila_melanogaster UGUAUAU 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.075536 +PUM FBGN0003165 no Drosophila_melanogaster UGUACAU 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.229612 +PUM FBGN0003165 no Drosophila_melanogaster UGUAAAG 7 RNAcompete C 23846655 RNAcompete PUF M097_0.6 0.108367 +PUM FBGN0003165 no Drosophila_melanogaster UGUACAG 7 RNAcompete C 23846655 RNAcompete PUF M097_0.6 0.259987** +PUM FBGN0003165 no Drosophila_melanogaster UGUAAAU 7 RNAcompete C 23846655 RNAcompete PUF M097_0.6 0.083386 +PUM FBGN0003165 no Drosophila_melanogaster UGUACAU 7 RNAcompete C 23846655 RNAcompete PUF M097_0.6 0.200054 +PUM FBGN0003165 no Drosophila_melanogaster UGUAAAG 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.110536 +PUM FBGN0003165 no Drosophila_melanogaster UGUACAG 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.081881 +PUM FBGN0003165 no Drosophila_melanogaster UGUAAGG 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.039232 +PUM FBGN0003165 no Drosophila_melanogaster UGUACGG 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.029062 +PUM FBGN0003165 no Drosophila_melanogaster UGUAAAU 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.136543** +PUM FBGN0003165 no Drosophila_melanogaster UGUACAU 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.101146 +PUM FBGN0003165 no Drosophila_melanogaster UGUAAGU 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.048463 +PUM FBGN0003165 no Drosophila_melanogaster UGUACGU 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.035899 +PUM FBGN0003165 no Drosophila_melanogaster UGUAAAU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.072635 +PUM FBGN0003165 no Drosophila_melanogaster UGUAUAU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.030804 +PUM FBGN0003165 no Drosophila_melanogaster UGUAAUU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.166220** +PUM FBGN0003165 no Drosophila_melanogaster UGUAUUU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.070492 +PUM FBGN0003165 no Drosophila_melanogaster UGUAAGU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.04961 +PUM FBGN0003165 no Drosophila_melanogaster UGUAUGU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.021039 +PUM FBGN0003165 no Drosophila_melanogaster UGUACAG 7 RNAcompete C 23846655 RNAcompete PUF M098_0.6 0.247005** +PUM FBGN0003165 no Drosophila_melanogaster UGUAUAG 7 RNAcompete C 23846655 RNAcompete PUF M098_0.6 0.123721 +PUM FBGN0003165 no Drosophila_melanogaster UGUACAU 7 RNAcompete C 23846655 RNAcompete PUF M098_0.6 0.211164 +PUM FBGN0003165 no Drosophila_melanogaster UGUAUAU 7 RNAcompete C 23846655 RNAcompete PUF M098_0.6 0.105768 +PUM FBGN0003165 no Drosophila_melanogaster UGUGUAUAUA 10 EMSA R 19146813 EMSA PUF 5 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens AAUUGUACAUAA 12 fluorescence methods R 19540345 other PUF 137 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens CCAGAAUUGUA 11 EMSA R 9404893 EMSA PUF 82 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens CUUGUAGAUAA 11 fluorescence methods R 19540345 other PUF 74 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UGUAAAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 533 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UGUAAUAUU 9 X-RAY DIFFRACTION PDB 18328718 X-RAY DIFFRACTION PUF 484 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UGUACAU 7 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 569 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UGUACAUA 8 X-RAY DIFFRACTION PDB 12202039 X-RAY DIFFRACTION PUF 389 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UGUACAUC 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 406 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UGUAGAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 337 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UGUAAAUA 8 RIP-chip C 18411299 genome-wide in vivo immunoprecipitation PUF 151 0.332237** +PUM1 ENSG00000134644 no Homo_sapiens UGUAUAUA 8 RIP-chip C 18411299 genome-wide in vivo immunoprecipitation PUF 151 0.332237** +PUM1 ENSG00000134644 no Homo_sapiens UGUACAUA 8 RIP-chip C 18411299 genome-wide in vivo immunoprecipitation PUF 151 0.332237** +PUM1 ENSG00000134644 no Homo_sapiens UGUAAAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 114 0.332237** +PUM1 ENSG00000134644 no Homo_sapiens UGUAUAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 114 0.332237** +PUM1 ENSG00000134644 no Homo_sapiens UGUACAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 114 0.332237** +PUM1 ENSG00000134644 no Homo_sapiens UGUAUAU 7 X-RAY DIFFRACTION PDB 12202039 X-RAY DIFFRACTION PUF 419 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UGUAUAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 339 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UGUCCAG 7 X-RAY DIFFRACTION PDB 12202039 X-RAY DIFFRACTION PUF 545 1.000000** +PUM1 ENSG00000134644 no Homo_sapiens UUUAAUGUU 9 X-RAY DIFFRACTION PDB 18328718 X-RAY DIFFRACTION PUF 343 1.000000** +PUM2 ENSG00000055917 no Homo_sapiens UGUAAAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 503 1.000000** +PUM2 ENSG00000055917 no Homo_sapiens UGUACAUC 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 361 1.000000** +PUM2 ENSG00000055917 no Homo_sapiens UGUAGAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 514 1.000000** +PUM2 ENSG00000055917 no Homo_sapiens UGUAAAUA 8 RIP-chip C 18776931 genome-wide in vivo immunoprecipitation PUF 116 0.332237** +PUM2 ENSG00000055917 no Homo_sapiens UGUAUAUA 8 RIP-chip C 18776931 genome-wide in vivo immunoprecipitation PUF 116 0.332237** +PUM2 ENSG00000055917 no Homo_sapiens UGUACAUA 8 RIP-chip C 18776931 genome-wide in vivo immunoprecipitation PUF 116 0.332237** +PUM2 ENSG00000055917 no Homo_sapiens UGUAAAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 129 0.332237** +PUM2 ENSG00000055917 no Homo_sapiens UGUAUAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 129 0.332237** +PUM2 ENSG00000055917 no Homo_sapiens UGUACAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 129 0.332237** +PUM2 ENSG00000055917 no Homo_sapiens UGUAAAUA 8 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation PUF 107 0.250000** +PUM2 ENSG00000055917 no Homo_sapiens UGUAUAUA 8 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation PUF 107 0.250000** +PUM2 ENSG00000055917 no Homo_sapiens UGUACAUA 8 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation PUF 107 0.250000** +PUM2 ENSG00000055917 no Homo_sapiens UGUAGAUA 8 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation PUF 107 0.250000** +PUM2 ENSMUSG00000020594 no Mus_musculus AAUUGUACAUAA 12 fluorescence methods R 19540345 other PUF 115 1.000000** +PUM2 ENSMUSG00000020594 no Mus_musculus CUUGUAGAUAA 11 fluorescence methods R 19540345 other PUF 66 1.000000** +PUM2 ENSMUSG00000020594 no Mus_musculus UGUA 4 SELEX C 11780640 SELEX PUF M286_0.6 1.000000** +PUM2 ENSMUSG00000020594 no Mus_musculus UGUA 4 SELEX R 11780640 SELEX PUF 329_11780640.pfm 1.000000** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 180 0.332237** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 180 0.332237** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 180 0.332237** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** +QKI ENSG00000112531 no Homo_sapiens ACACACUAACCU 12 fluorescence methods R 15273320 other KH 104 1.000000** +QKI ENSG00000112531 no Homo_sapiens ACUAAC 6 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation KH 3 1.000000** +QKI ENSG00000112531 no Homo_sapiens ACUAAC 6 X-RAY DIFFRACTION PDB 23630077 X-RAY DIFFRACTION KH 352 1.000000** +QKI ENSG00000112531 no Homo_sapiens ACUAACA 7 RNAcompete C 23846655 RNAcompete KH M046_0.6 0.278208** +QKI ENSG00000112531 no Homo_sapiens ACUAACC 7 RNAcompete C 23846655 RNAcompete KH M046_0.6 0.206363 +QKI ENSG00000112531 no Homo_sapiens ACUAACG 7 RNAcompete C 23846655 RNAcompete KH M046_0.6 0.117093 +QKI ENSG00000112531 no Homo_sapiens ACUUAU 6 EMSA with WT and mutated sequences with recombinant protein S 24722255 EMSA KH 1141 1.000000** +QKI ENSG00000112531 no Homo_sapiens AUCUAAUCAUAU 12 fluorescence methods R 15273320 other KH 83 1.000000** +QKI ENSG00000112531 no Homo_sapiens AUCUACUCAUAU 12 fluorescence methods R 15273320 other KH 70 1.000000** +QKI ENSG00000112531 no Homo_sapiens AUUAAC 6 EMSA with WT and mutated sequences and UV crosslinking with recombinant protein S 24722255 UV cross-linking;EMSA KH 1138 1.000000** +QKI ENSG00000112531 no Homo_sapiens CUAAU 5 EMSA with WT and mutated sequences and UV crosslinking with recombinant protein S 24722255 UV cross-linking;EMSA KH 1139 1.000000** +QKI ENSG00000112531 yes Homo_sapiens ACUAAU 6 EMSA with WT and mutated sequences with recombinant protein S 24722255 EMSA KH 1142 1.000000** +QKI ENSG00000112531 yes Homo_sapiens CGAGU 5 EMSA with WT and mutated sequences and UV crosslinking with recombinant protein S 24722255 UV cross-linking;EMSA KH 1140 1.000000** +QKR58E-1 FBGN0022986 no Drosophila_melanogaster AUAAUAA 7 RNAcompete C 23846655 RNAcompete KH M133_0.6 0.207101** +QKR58E-1 FBGN0022986 no Drosophila_melanogaster AUAAUUA 7 RNAcompete C 23846655 RNAcompete KH M133_0.6 0.079727 +QKR58E-1 FBGN0022986 no Drosophila_melanogaster AUAAUAC 7 RNAcompete C 23846655 RNAcompete KH M133_0.6 0.054792 +QKR58E-1 FBGN0022986 no Drosophila_melanogaster AUAAUUC 7 RNAcompete C 23846655 RNAcompete KH M133_0.6 0.021093 +RALY ENSG00000125970 no Homo_sapiens UUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M150_0.6 0.114798 +RALY ENSG00000125970 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M150_0.6 0.129166 +RALY ENSG00000125970 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M150_0.6 0.363845** +RAVER1 ENSMUSG00000010205 no Mus_musculus UCAUGCAGUCUG 12 Isothermal titration calorimetry R 19523901 other RRM 152 1.000000** +RB97D FBGN0004903 no Drosophila_melanogaster GGAGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000213 +RB97D FBGN0004903 no Drosophila_melanogaster UGAGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000495 +RB97D FBGN0004903 no Drosophila_melanogaster GUAGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000008 +RB97D FBGN0004903 no Drosophila_melanogaster UUAGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000018 +RB97D FBGN0004903 no Drosophila_melanogaster GGGGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.01953 +RB97D FBGN0004903 no Drosophila_melanogaster UGGGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.045381** +RB97D FBGN0004903 no Drosophila_melanogaster GUGGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000724 +RB97D FBGN0004903 no Drosophila_melanogaster UUGGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.001681 +RBFOX1 ENSDARG00000014746 no Danio_rerio GCAUG 5 SELEX C 12574126 SELEX RRM M297_0.6 0.855000** +RBFOX1 ENSG00000078328 no Homo_sapiens AGCAUG 6 Mutational analysis. In vivo splicing with wt and mutated sequences. S 22434879 other RRM 621 1.000000** +RBFOX1 ENSG00000078328 no Homo_sapiens AGCAUG 6 SELEX of 40nt random with recombinant protein. Consensus motif: UGCAUG. Immunoblot, siRNA, pulldown assay. S 16537540 SELEX RRM s92 0.495098** +RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 Immunoblot, siRNA, pulldown assay. S 16537540 other RRM 617 1.000000** +RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 Mutational analysis. In vivo splicing with wt and mutated sequences. S 22434879 other RRM 620 1.000000** +RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 SELEX C 16537540 SELEX RRM M298_0.6 0.937447** +RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 SELEX of 40nt random with recombinant protein. Consensus motif: UGCAUG. Immunoblot, siRNA, pulldown assay. S 16537540 SELEX RRM s92 0.495098** +RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 UV cross-linking with HeLa nuclear extract and immunoprecipitation S 18573872 UV cross-linking RRM 616 1.000000** +RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation. S 17101796 UV cross-linking;other RRM 613 1.000000** +RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUGU 7 SOLUTION NMR PDB 16362037 SOLUTION NMR RRM 335 1.000000** +RBFOX1 ENSG00000078328 no Homo_sapiens AGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M159_0.6 0.097901 +RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M159_0.6 0.183322 +RBFOX1 ENSG00000078328 no Homo_sapiens AGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M159_0.6 0.150257 +RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M159_0.6 0.281360** +RBFOX1 ENSG00000078328 yes Homo_sapiens UGACUG 6 siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation. S 17101796 UV cross-linking;other RRM 612 1.000000** +RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 Immunoblot, siRNA, pulldown assay. S 16537540 other RRM 627 1.000000** +RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 In vivo splicing in HEK293T with wt and mutated sequences S 22044765 other RRM 630 1.000000** +RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 Splicing assays with wt and mutant minigenes, immunoblotting S 19564422 other RRM 631 1.000000** +RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 UV cross-linking with HeLa nuclear extract and immunoprecipitation S 18573872 UV cross-linking RRM 625 1.000000** +RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 protein affinity purification R 16537540 protein affinity purification RRM 141 1.000000** +RBFOX2 ENSG00000100320 yes Homo_sapiens UGACUG 6 siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation. S 17101796 UV cross-linking;other RRM 622 1.000000** +RBM14 ENSG00000239306 no Homo_sapiens GCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M109_0.6 0.114006 +RBM14 ENSG00000239306 no Homo_sapiens GCGCGGG 7 RNAcompete C 23846655 RNAcompete RRM M109_0.6 0.225117** +RBM14 ENSG00000239306 no Homo_sapiens GCGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M050_0.6 0.034676 +RBM14 ENSG00000239306 no Homo_sapiens GCGCGGC 7 RNAcompete C 23846655 RNAcompete RRM M050_0.6 0.106117 +RBM14 ENSG00000239306 no Homo_sapiens GCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M050_0.6 0.084325 +RBM14 ENSG00000239306 no Homo_sapiens GCGCGGG 7 RNAcompete C 23846655 RNAcompete RRM M050_0.6 0.258056** +RBM24 ENSG00000112183 no Homo_sapiens AGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.073928 +RBM24 ENSG00000112183 no Homo_sapiens UGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.057299 +RBM24 ENSG00000112183 no Homo_sapiens AGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.174150** +RBM24 ENSG00000112183 no Homo_sapiens UGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.134978 +RBM24 ENSG00000112183 no Homo_sapiens AGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.03446 +RBM24 ENSG00000112183 no Homo_sapiens UGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.026709 +RBM24 ENSG00000112183 no Homo_sapiens AGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.081177 +RBM24 ENSG00000112183 no Homo_sapiens UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.062918 +RBM24 ENSG00000112183 no Homo_sapiens AGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.021748 +RBM24 ENSG00000112183 no Homo_sapiens UGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.016856 +RBM24 ENSG00000112183 no Homo_sapiens AGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.051231 +RBM24 ENSG00000112183 no Homo_sapiens UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.039708 +RBM24A ENSTNIG00000009181 no Tetraodon_nigroviridis AGUGUG 6 RNAcompete C 23846655 RNAcompete RRM M240_0.6 0.322733** +RBM24A ENSTNIG00000009181 no Tetraodon_nigroviridis UGUGUG 6 RNAcompete C 23846655 RNAcompete RRM M240_0.6 0.264324 +RBM25 ENSG00000119707 no Homo_sapiens AUCGGGCA 8 Fluorescence polarization assay S 23190262 other RRM;PWI 1144 1.000000** +RBM25 ENSG00000119707 no Homo_sapiens CGGGCA 6 Mutational analysis, immuoprecipitation assay in HeLa cells, EMSA and competition assay with recombinant protein. S 18663000 EMSA RRM;PWI 1143 1.000000** +RBM28 ENSG00000106344 no Homo_sapiens GAGUAGA 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.157009** +RBM28 ENSG00000106344 no Homo_sapiens GUGUAGA 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.127322 +RBM28 ENSG00000106344 no Homo_sapiens GAGUAGU 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.135904 +RBM28 ENSG00000106344 no Homo_sapiens GUGUAGU 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.110207 +RBM28 ENSG00000106344 no Homo_sapiens GAGUAGG 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.063611 +RBM28 ENSG00000106344 no Homo_sapiens GUGUAGG 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.051583 +RBM3 ENSG00000102317 no Homo_sapiens AAAACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.007162 +RBM3 ENSG00000102317 no Homo_sapiens GAAACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.028169 +RBM3 ENSG00000102317 no Homo_sapiens AAUACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.023698 +RBM3 ENSG00000102317 no Homo_sapiens GAUACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.093205** +RBM3 ENSG00000102317 no Homo_sapiens AAGACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.007442 +RBM3 ENSG00000102317 no Homo_sapiens GAGACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.029271 +RBM3 ENSG00000102317 no Homo_sapiens AAAACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.002896 +RBM3 ENSG00000102317 no Homo_sapiens GAAACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.011389 +RBM3 ENSG00000102317 no Homo_sapiens AAUACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.009581 +RBM3 ENSG00000102317 no Homo_sapiens GAUACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.037683 +RBM3 ENSG00000102317 no Homo_sapiens AAGACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.003009 +RBM3 ENSG00000102317 no Homo_sapiens GAGACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.011834 +RBM38 ENSDARG00000058818 no Danio_rerio GAGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M238_0.6 0.095801 +RBM38 ENSDARG00000058818 no Danio_rerio UAGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M238_0.6 0.033455 +RBM38 ENSDARG00000058818 no Danio_rerio GUGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M238_0.6 0.224379** +RBM38 ENSDARG00000058818 no Danio_rerio UUGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M238_0.6 0.078356 +RBM38 ENSMUSG00000027510 no Mus_musculus GGGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.069794 +RBM38 ENSMUSG00000027510 no Mus_musculus UGGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.032523 +RBM38 ENSMUSG00000027510 no Mus_musculus GUGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.175531** +RBM38 ENSMUSG00000027510 no Mus_musculus UUGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.081796 +RBM38 ENSMUSG00000027510 no Mus_musculus GGGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.023648 +RBM38 ENSMUSG00000027510 no Mus_musculus UGGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.01102 +RBM38 ENSMUSG00000027510 no Mus_musculus GUGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.059475 +RBM38 ENSMUSG00000027510 no Mus_musculus UUGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.027715 +RBM4 ENSG00000173933 no Homo_sapiens CCUCUUU 7 Mutagenesis, in vivo splicing assay S 21518792 other RRM;ZF_CCHC 1147 1.000000** +RBM4 ENSG00000173933 no Homo_sapiens CCUUCCUU 8 Mutational analysis. S 16260624 other RRM;ZF_CCHC 1146 1.000000** +RBM4 ENSG00000173933 no Homo_sapiens CGCGCGA 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.001609 +RBM4 ENSG00000173933 no Homo_sapiens CGCGCGG 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.004794 +RBM4 ENSG00000173933 no Homo_sapiens GCGCGCG 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.009093 +RBM4 ENSG00000173933 no Homo_sapiens GCGCGGG 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.036102** +RBM4 ENSG00000173933 no Homo_sapiens GCGCGGU 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.012114 +RBM4 ENSG00000173933 no Homo_sapiens UCCUUCUUG 9 Mutational analysis, UV cross-linking assay with purified recombinant protein. S 16777844 UV cross-linking;other RRM;ZF_CCHC 1145 1.000000** +RBM4.3 ENSDARG00000022129 no Danio_rerio ACGACG 6 RNAcompete C 23846655 RNAcompete RRM M212_0.6 0.513912** +RBM4.3 ENSDARG00000022129 no Danio_rerio ACGGCG 6 RNAcompete C 23846655 RNAcompete RRM M212_0.6 0.209626 +RBM41 ENSG00000089682 no Homo_sapiens AUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.050623 +RBM41 ENSG00000089682 no Homo_sapiens UUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.050015 +RBM41 ENSG00000089682 no Homo_sapiens AUACUUG 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.034662 +RBM41 ENSG00000089682 no Homo_sapiens UUACUUG 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.034246 +RBM41 ENSG00000089682 no Homo_sapiens AUACAUU 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.155026** +RBM41 ENSG00000089682 no Homo_sapiens UUACAUU 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.153166 +RBM41 ENSG00000089682 no Homo_sapiens AUACUUU 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.10615 +RBM41 ENSG00000089682 no Homo_sapiens UUACUUU 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.104876 +RBM42 ENSG00000126254 no Homo_sapiens AACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M142_0.6 0.273579** +RBM42 ENSG00000126254 no Homo_sapiens AACUACG 7 RNAcompete C 23846655 RNAcompete RRM M142_0.6 0.166657 +RBM42 ENSXETG00000017599 no Xenopus_tropicalis AACUAC 6 RNAcompete C 23846655 RNAcompete RRM M237_0.6 0.530727** +RBM42 ENSXETG00000017599 no Xenopus_tropicalis UACUAC 6 RNAcompete C 23846655 RNAcompete RRM M237_0.6 0.141564 +RBM45 ENSMUSG00000042369 no Mus_musculus GACGAAA 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.033001 +RBM45 ENSMUSG00000042369 no Mus_musculus GACGACA 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.095575** +RBM45 ENSMUSG00000042369 no Mus_musculus GACGAAC 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.020846 +RBM45 ENSMUSG00000042369 no Mus_musculus GACGACC 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.060375 +RBM45 ENSMUSG00000042369 no Mus_musculus GACGAAG 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.013353 +RBM45 ENSMUSG00000042369 no Mus_musculus GACGACG 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.038673 +RBM46 ENSG00000151962 no Homo_sapiens AAUCAAA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.077606 +RBM46 ENSG00000151962 no Homo_sapiens GAUCAAA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.023399 +RBM46 ENSG00000151962 no Homo_sapiens AAUGAAA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.049242 +RBM46 ENSG00000151962 no Homo_sapiens GAUGAAA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.014847 +RBM46 ENSG00000151962 no Homo_sapiens AAUCAUA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.029572 +RBM46 ENSG00000151962 no Homo_sapiens GAUCAUA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.008916 +RBM46 ENSG00000151962 no Homo_sapiens AAUGAUA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.018764 +RBM46 ENSG00000151962 no Homo_sapiens GAUGAUA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.005658 +RBM46 ENSG00000151962 no Homo_sapiens AAUCAAU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.100928** +RBM46 ENSG00000151962 no Homo_sapiens GAUCAAU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.030431 +RBM46 ENSG00000151962 no Homo_sapiens AAUGAAU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.06404 +RBM46 ENSG00000151962 no Homo_sapiens GAUGAAU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.019309 +RBM46 ENSG00000151962 no Homo_sapiens AAUCAUU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.038459 +RBM46 ENSG00000151962 no Homo_sapiens GAUCAUU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.011596 +RBM46 ENSG00000151962 no Homo_sapiens AAUGAUU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.024403 +RBM46 ENSG00000151962 no Homo_sapiens GAUGAUU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.007358 +RBM46 ENSG00000151962 no Homo_sapiens AAUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.050703 +RBM46 ENSG00000151962 no Homo_sapiens GAUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.015288 +RBM46 ENSG00000151962 no Homo_sapiens AAUGAAG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.032172 +RBM46 ENSG00000151962 no Homo_sapiens GAUGAAG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.0097 +RBM46 ENSG00000151962 no Homo_sapiens AAUCAUG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.019321 +RBM46 ENSG00000151962 no Homo_sapiens GAUCAUG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.005825 +RBM46 ENSG00000151962 no Homo_sapiens AAUGAUG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.012259 +RBM46 ENSG00000151962 no Homo_sapiens GAUGAUG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.003696 +RBM47 ENSGALG00000014267 no Gallus_gallus GAUGAA 6 RNAcompete C 23846655 RNAcompete RRM M234_0.6 0.289319 +RBM47 ENSGALG00000014267 no Gallus_gallus GAUGAU 6 RNAcompete C 23846655 RNAcompete RRM M234_0.6 0.412244** +RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAAA 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.061562 +RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAUA 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.084869 +RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAAU 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.09241 +RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAUU 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.127396** +RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAAC 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.063999 +RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAUC 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.088228 +RBM5 ENSG00000003756 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with recombinant protein. S 11029660 other ZF_RANBP 1151 1.000000** +RBM5 ENSG00000003756 no Homo_sapiens AGGUAA 6 Chemical shift mapping (NMR) S 22162216 SOLUTION NMR ZF_RANBP 1152 1.000000** +RBM5 ENSG00000003756 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinant protein. S 11029660 other ZF_RANBP 1150 1.000000** +RBM5 ENSG00000003756 no Homo_sapiens CUCUUCUCU 9 EMSA and UV cross-linking with recombinant protein using wt and mutated oligomers and RNA competitors. S 18840686 UV cross-linking;EMSA ZF_RANBP 1148 1.000000** +RBM5 ENSG00000003756 no Homo_sapiens GAAGGAA 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.177741** +RBM5 ENSG00000003756 no Homo_sapiens GAGGGAA 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.056017 +RBM5 ENSG00000003756 no Homo_sapiens GAAGGUA 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.070107 +RBM5 ENSG00000003756 no Homo_sapiens GAGGGUA 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.022095 +RBM5 ENSG00000003756 no Homo_sapiens GAAGGAG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.061985 +RBM5 ENSG00000003756 no Homo_sapiens GAGGGAG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.019535 +RBM5 ENSG00000003756 no Homo_sapiens GAAGGUG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.024449 +RBM5 ENSG00000003756 no Homo_sapiens GAGGGUG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.007705 +RBM5 ENSG00000003756 no Homo_sapiens GGGGGG 6 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1153 1.000000** +RBM5 ENSG00000003756 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 11029660 other ZF_RANBP 1149 1.000000** +RBM5 ENSG00000003756 no Homo_sapiens GGUGGU 6 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1154 1.000000** +RBM5 ENSG00000003756 no Homo_sapiens CAAGGAG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M145_0.6 0.052852 +RBM5 ENSG00000003756 no Homo_sapiens GAAGGAG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M145_0.6 0.118025** +RBM5 ENSG00000003756 no Homo_sapiens CAAGGGG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M145_0.6 0.016513 +RBM5 ENSG00000003756 no Homo_sapiens GAAGGGG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M145_0.6 0.036876 +RBM6 ENSG00000004534 no Homo_sapiens AAUCCAA 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.109568 +RBM6 ENSG00000004534 no Homo_sapiens UAUCCAA 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.042489 +RBM6 ENSG00000004534 no Homo_sapiens CAUCCAA 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.066668 +RBM6 ENSG00000004534 no Homo_sapiens AAUCCAG 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.216403** +RBM6 ENSG00000004534 no Homo_sapiens UAUCCAG 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.083918 +RBM6 ENSG00000004534 no Homo_sapiens CAUCCAG 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.131674 +RBM8A ENSG00000265241 no Homo_sapiens ACGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.011013 +RBM8A ENSG00000265241 no Homo_sapiens GCGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.03274 +RBM8A ENSG00000265241 no Homo_sapiens AUGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.004743 +RBM8A ENSG00000265241 no Homo_sapiens GUGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.0141 +RBM8A ENSG00000265241 no Homo_sapiens ACGCGCU 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.011327 +RBM8A ENSG00000265241 no Homo_sapiens GCGCGCU 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.033672 +RBM8A ENSG00000265241 no Homo_sapiens AUGCGCU 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.004878 +RBM8A ENSG00000265241 no Homo_sapiens GUGCGCU 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.014502 +RBM8A ENSG00000265241 no Homo_sapiens ACGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.043038 +RBM8A ENSG00000265241 no Homo_sapiens GCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.127946** +RBM8A ENSG00000265241 no Homo_sapiens AUGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.018536 +RBM8A ENSG00000265241 no Homo_sapiens GUGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.055103 +RBMS1 ENSG00000153250 no Homo_sapiens GAUAUAC 7 RNAcompete C 23846655 RNAcompete RRM M143_0.6 0.057032 +RBMS1 ENSG00000153250 no Homo_sapiens UAUAUAC 7 RNAcompete C 23846655 RNAcompete RRM M143_0.6 0.173794** +RBMS1 ENSG00000153250 no Homo_sapiens GAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M143_0.6 0.037326 +RBMS1 ENSG00000153250 no Homo_sapiens UAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M143_0.6 0.113742 +RBMS3 ENSG00000144642 no Homo_sapiens AAUAUA 6 RNAcompete C 23846655 RNAcompete RRM M164_0.6 0.10803 +RBMS3 ENSG00000144642 no Homo_sapiens UAUAUA 6 RNAcompete C 23846655 RNAcompete RRM M164_0.6 0.353553** +RBMS3 ENSG00000144642 no Homo_sapiens CAUAUA 6 RNAcompete C 23846655 RNAcompete RRM M164_0.6 0.107938 +RBMS3 ENSG00000144642 no Homo_sapiens AUAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.05785 +RBMS3 ENSG00000144642 no Homo_sapiens CUAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.020121 +RBMS3 ENSG00000144642 no Homo_sapiens AUAUAUA 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.151988** +RBMS3 ENSG00000144642 no Homo_sapiens CUAUAUA 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.052863 +RBMS3 ENSG00000144642 no Homo_sapiens AUAUAGC 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.039342 +RBMS3 ENSG00000144642 no Homo_sapiens CUAUAGC 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.013684 +RBMS3 ENSG00000144642 no Homo_sapiens AUAUAUC 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.103361 +RBMS3 ENSG00000144642 no Homo_sapiens CUAUAUC 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.03595 +RBMX ENSG00000147274 no Homo_sapiens AAAAU 5 NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1). S 24692659 SOLUTION NMR;EMSA RRM 847 1.000000** +RBMX ENSG00000147274 no Homo_sapiens ACCAAA 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 844 1.000000** +RBMX ENSG00000147274 no Homo_sapiens AUCAAA 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 842 1.000000** +RBMX ENSG00000147274 no Homo_sapiens AUCCCA 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 848 1.000000** +RBMX ENSG00000147274 no Homo_sapiens AUCCCC 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 849 1.000000** +RBMX ENSG00000147274 no Homo_sapiens UAAGAC 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 843 1.000000** +RBMX ENSG00000147274 no Homo_sapiens UCAAA 5 SOLUTION NMR PDB 24692659 SOLUTION NMR RRM 526 1.000000** +RBMX ENSG00000147274 no Homo_sapiens UCAAAA 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 845 1.000000** +RBMY1A1 ENSG00000234414 no Homo_sapiens ACAAGAC 7 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 410 1.000000** +RBMY1A1 ENSG00000234414 no Homo_sapiens CACAA 5 SELEX C 17318228 SELEX RRM M246_0.6 0.315789 +RBMY1A1 ENSG00000234414 no Homo_sapiens CUCAA 5 SELEX C 17318228 SELEX RRM M246_0.6 0.647895** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCAAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUAAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCUAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUUAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCCAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUCAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCGAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUGAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCAUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUAUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCUUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUUUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCCUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUCUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCGUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUGUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCACA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUACA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCUCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUUCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCCCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUCCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCGCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUGCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCAGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUAGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCUGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUUGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCCGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUCGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCCGGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster AUCUGGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** +RBP1 FBGN0260944 no Drosophila_melanogaster ACAACUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** +RBP1 FBGN0260944 no Drosophila_melanogaster UCAACUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** +RBP1 FBGN0260944 no Drosophila_melanogaster GCAACUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** +RBP1 FBGN0260944 no Drosophila_melanogaster ACAUCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** +RBP1 FBGN0260944 no Drosophila_melanogaster UCAUCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** +RBP1 FBGN0260944 no Drosophila_melanogaster GCAUCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** +RBP1 FBGN0260944 no Drosophila_melanogaster ACAGCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** +RBP1 FBGN0260944 no Drosophila_melanogaster UCAGCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** +RBP1 FBGN0260944 no Drosophila_melanogaster GCAGCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** +RBP1 FBGN0260944 no Drosophila_melanogaster ACAACAA 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.109392 +RBP1 FBGN0260944 no Drosophila_melanogaster UCAACAA 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.037632 +RBP1 FBGN0260944 no Drosophila_melanogaster ACAACGA 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.202494** +RBP1 FBGN0260944 no Drosophila_melanogaster UCAACGA 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.069661 +RBP1 FBGN0260944 no Drosophila_melanogaster ACAACAG 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.068421 +RBP1 FBGN0260944 no Drosophila_melanogaster UCAACAG 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.023538 +RBP1 FBGN0260944 no Drosophila_melanogaster ACAACGG 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.126654 +RBP1 FBGN0260944 no Drosophila_melanogaster UCAACGG 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.043571 +RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAACA 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.036383 +RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAUCA 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.035065 +RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAGCA 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.018335 +RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAACG 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.131710** +RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAUCG 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.126941 +RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAGCG 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.066375 +RBP9 FBGN0010263 no Drosophila_melanogaster UUAAGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.033736 +RBP9 FBGN0010263 no Drosophila_melanogaster UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.087785 +RBP9 FBGN0010263 no Drosophila_melanogaster UUGAGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.02762 +RBP9 FBGN0010263 no Drosophila_melanogaster UUAUGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.03322 +RBP9 FBGN0010263 no Drosophila_melanogaster UUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.086442 +RBP9 FBGN0010263 no Drosophila_melanogaster UUGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.027197 +RBP9 FBGN0010263 no Drosophila_melanogaster UUAGGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.078178 +RBP9 FBGN0010263 no Drosophila_melanogaster UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.203428** +RBP9 FBGN0010263 no Drosophila_melanogaster UUGGGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.064005 +RC3H1 ENSG00000135870 no Homo_sapiens CCUUCUGUG 9 X-RAY DIFFRACTION PDB 25026078 X-RAY DIFFRACTION ZF_CCCH 354 1.000000** +RC3H1 ENSG00000135870 no Homo_sapiens UCCCUUCUGUG 11 X-RAY DIFFRACTION PDB 25026078 X-RAY DIFFRACTION ZF_CCCH 467 1.000000** +RC3H1 ENSG00000135870 no Homo_sapiens UUUC 4 X-RAY DIFFRACTION PDB 25026078 X-RAY DIFFRACTION ZF_CCCH 531 1.000000** +RC3H1 ENSMUSG00000040423 no Mus_musculus UUUCUGUG 8 X-RAY DIFFRACTION PDB 25026077 X-RAY DIFFRACTION ZF_CCCH 528 1.000000** +RC3H1 ENSMUSG00000040423 no Mus_musculus UUUUCUGUG 9 X-RAY DIFFRACTION PDB 25026077 X-RAY DIFFRACTION ZF_CCCH 350 1.000000** +REF2 FBGN0032439 no Drosophila_melanogaster AGAAGAA 7 RNAcompete C 23846655 RNAcompete RRM M057_0.6 0.035254 +REF2 FBGN0032439 no Drosophila_melanogaster AGAAGGA 7 RNAcompete C 23846655 RNAcompete RRM M057_0.6 0.094666 +REF2 FBGN0032439 no Drosophila_melanogaster AGAAGAC 7 RNAcompete C 23846655 RNAcompete RRM M057_0.6 0.071279 +REF2 FBGN0032439 no Drosophila_melanogaster AGAAGGC 7 RNAcompete C 23846655 RNAcompete RRM M057_0.6 0.191404** +RIN FBGN0015778 no Drosophila_melanogaster AAAUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.014227 +RIN FBGN0015778 no Drosophila_melanogaster GAAUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.01141 +RIN FBGN0015778 no Drosophila_melanogaster AGAUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.025738 +RIN FBGN0015778 no Drosophila_melanogaster GGAUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.020642 +RIN FBGN0015778 no Drosophila_melanogaster AAUUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.006743 +RIN FBGN0015778 no Drosophila_melanogaster GAUUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.005408 +RIN FBGN0015778 no Drosophila_melanogaster AGUUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.0122 +RIN FBGN0015778 no Drosophila_melanogaster GGUUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.009784 +RIN FBGN0015778 no Drosophila_melanogaster AAAUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.041075 +RIN FBGN0015778 no Drosophila_melanogaster GAAUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.032942 +RIN FBGN0015778 no Drosophila_melanogaster AGAUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.074308** +RIN FBGN0015778 no Drosophila_melanogaster GGAUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.059596 +RIN FBGN0015778 no Drosophila_melanogaster AAUUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.019469 +RIN FBGN0015778 no Drosophila_melanogaster GAUUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.015615 +RIN FBGN0015778 no Drosophila_melanogaster AGUUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.035222 +RIN FBGN0015778 no Drosophila_melanogaster GGUUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.028248 +RNA15 YGL044C no Saccharomyces_cerevisiae AAUAAU 6 SOLUTION NMR PDB 20600122 SOLUTION NMR RRM 362 1.000000** +RNA15 YGL044C no Saccharomyces_cerevisiae UAUAUAUAA 9 SOLUTION NMR PDB 20600122 SOLUTION NMR RRM 434 1.000000** +RNA15 YGL044C no Saccharomyces_cerevisiae UGUUGU 6 NMR R 20097654 NMR RRM 139 1.000000** +RNA15 YGL044C no Saccharomyces_cerevisiae UGUUUG 6 NMR R 20097654 NMR RRM 88 1.000000** +RNA15 YGL044C no Saccharomyces_cerevisiae UGCGUAUUCUCC 12 SELEX C 9199325 SELEX RRM M299_0.6 0.365000** +RNA15 YGL044C no Saccharomyces_cerevisiae UGUGUAUUCUCC 12 SELEX C 9199325 SELEX RRM M299_0.6 0.365000** +RNA15 YGL044C no Saccharomyces_cerevisiae UGCGUAUUUUCC 12 SELEX C 9199325 SELEX RRM M299_0.6 0.125 +RNA15 YGL044C no Saccharomyces_cerevisiae UGUGUAUUUUCC 12 SELEX C 9199325 SELEX RRM M299_0.6 0.125 +RNA15 YGL044C no Saccharomyces_cerevisiae UUUUUU 6 NMR R 20097654 NMR RRM 146 1.000000** +RNASEL ENSG00000135828 no Homo_sapiens AAAA 4 X-RAY DIFFRACTION PDB 24578532 X-RAY DIFFRACTION ANK;PKINASE;RIBONUC_2 563 1.000000** +RNP4F FBGN0014024 no Drosophila_melanogaster AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.085484 +RNP4F FBGN0014024 no Drosophila_melanogaster AGAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.027153 +RNP4F FBGN0014024 no Drosophila_melanogaster AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.036863 +RNP4F FBGN0014024 no Drosophila_melanogaster AGAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.011709 +RNP4F FBGN0014024 no Drosophila_melanogaster AGAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.127344** +RNP4F FBGN0014024 no Drosophila_melanogaster AGAUAAG 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.04045 +RNP4F FBGN0014024 no Drosophila_melanogaster AGAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.054914 +RNP4F FBGN0014024 no Drosophila_melanogaster AGAUAGG 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.017443 +RO3G_00049 RO3G_00049 no Rhizopus_oryzae AGGGGAA 7 RNAcompete C 23846655 RNAcompete RRM M184_0.6 0.334178** +RO3G_00049 RO3G_00049 no Rhizopus_oryzae GGGGGAA 7 RNAcompete C 23846655 RNAcompete RRM M184_0.6 0.088399 +ROX8 FBGN0005649 no Drosophila_melanogaster ACAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M139_0.6 0.056263 +ROX8 FBGN0005649 no Drosophila_melanogaster CCAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M139_0.6 0.196511** +ROX8 FBGN0005649 no Drosophila_melanogaster AUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M139_0.6 0.020241 +ROX8 FBGN0005649 no Drosophila_melanogaster CUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M139_0.6 0.070695 +RPB2 YOR151C no Saccharomyces_cerevisiae CCAGGC 6 X-RAY DIFFRACTION PDB 18004386 X-RAY DIFFRACTION RNA_POL_RPB2 523 1.000000** +RPB2 YOR151C no Saccharomyces_cerevisiae CCUGG 5 X-RAY DIFFRACTION PDB 18004386 X-RAY DIFFRACTION RNA_POL_RPB2 340 1.000000** +RPO21 YDL140C no Saccharomyces_cerevisiae CGCC 4 X-RAY DIFFRACTION PDB 18004386 X-RAY DIFFRACTION RNA_POL_RPB1 462 1.000000** +RRP6 YOR001W no Saccharomyces_cerevisiae AAAA 4 X-RAY DIFFRACTION PDB 25043052 X-RAY DIFFRACTION RNASE_PH;ECR1_N;EXOSC1;PMC2NT;HRDC 396 1.000000** +RSF1 FBGN0011305 no Drosophila_melanogaster AAACGCGCA 9 SELEX R 10325428 SELEX RRM 106 0.124069** +RSF1 FBGN0011305 no Drosophila_melanogaster AAUCGCGCA 9 SELEX R 10325428 SELEX RRM 106 0.124069** +RSF1 FBGN0011305 no Drosophila_melanogaster AAACGCGUA 9 SELEX R 10325428 SELEX RRM 106 0.124069** +RSF1 FBGN0011305 no Drosophila_melanogaster AAUCGCGUA 9 SELEX R 10325428 SELEX RRM 106 0.124069** +RSF1 FBGN0011305 no Drosophila_melanogaster AAACGCGCG 9 SELEX R 10325428 SELEX RRM 106 0.124069** +RSF1 FBGN0011305 no Drosophila_melanogaster AAUCGCGCG 9 SELEX R 10325428 SELEX RRM 106 0.124069** +RSF1 FBGN0011305 no Drosophila_melanogaster AAACGCGUG 9 SELEX R 10325428 SELEX RRM 106 0.124069** +RSF1 FBGN0011305 no Drosophila_melanogaster AAUCGCGUG 9 SELEX R 10325428 SELEX RRM 106 0.124069** +RSF1 FBGN0011305 no Drosophila_melanogaster ACGACGA 7 RNAcompete C 23846655 RNAcompete RRM M059_0.6 0.389231** +RSF1 FBGN0011305 no Drosophila_melanogaster ACGACGC 7 RNAcompete C 23846655 RNAcompete RRM M059_0.6 0.143637 +RSF1 FBGN0011305 no Drosophila_melanogaster ACGACGG 7 RNAcompete C 23846655 RNAcompete RRM M059_0.6 0.146673 +RSF1 FBGN0011305 no Drosophila_melanogaster CAACGACAA 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster UAACGACAA 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster CAUCGACAA 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster UAUCGACAA 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster CAACGACGA 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster UAACGACGA 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster CAUCGACGA 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster UAUCGACGA 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster CAACGACAG 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster UAACGACAG 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster CAUCGACAG 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster UAUCGACAG 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster CAACGACGG 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster UAACGACGG 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster CAUCGACGG 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RSF1 FBGN0011305 no Drosophila_melanogaster UAUCGACGG 9 SELEX R 10325428 SELEX RRM 170 0.062189** +RUMP FBGN0260010 no Drosophila_melanogaster GGAGG 5 RIP-chip C 15781475 genome-wide in vivo immunoprecipitation RRM 1 1.000000** +SAMD4A ENSG00000020577 no Homo_sapiens GCGGGAA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.020119 +SAMD4A ENSG00000020577 no Homo_sapiens GCUGGAA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.045805 +SAMD4A ENSG00000020577 no Homo_sapiens GCGGGUA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.007038 +SAMD4A ENSG00000020577 no Homo_sapiens GCUGGUA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.016023 +SAMD4A ENSG00000020577 no Homo_sapiens GCGGGCA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.019017 +SAMD4A ENSG00000020577 no Homo_sapiens GCUGGCA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.043294 +SAMD4A ENSG00000020577 no Homo_sapiens GCGGGAC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.064869 +SAMD4A ENSG00000020577 no Homo_sapiens GCUGGAC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.147685** +SAMD4A ENSG00000020577 no Homo_sapiens GCGGGUC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.022692 +SAMD4A ENSG00000020577 no Homo_sapiens GCUGGUC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.051662 +SAMD4A ENSG00000020577 no Homo_sapiens GCGGGCC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.061314 +SAMD4A ENSG00000020577 no Homo_sapiens GCUGGCC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.139592 +SAP-49 WBGENE00004723 no Caenorhabditis_elegans CGUGUGAG 8 SELEX R 9163526 SELEX RRM 145_9163526.pfm 0.139592** +SART3 ENSG00000075856 no Homo_sapiens AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M062_0.6 0.131421 +SART3 ENSG00000075856 no Homo_sapiens AGAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M062_0.6 0.207659** +SART3 ENSG00000075856 no Homo_sapiens AAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M062_0.6 0.038989 +SART3 ENSG00000075856 no Homo_sapiens AGAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M062_0.6 0.061608 +SF1 ENSG00000168066 no Homo_sapiens ACAGUCA 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1206 1.000000** +SF1 ENSG00000168066 no Homo_sapiens ACUUAU 6 UV crosslinking with recombinant protein S 24722255 UV cross-linking KH;ZF_CCHC 1209 1.000000** +SF1 ENSG00000168066 no Homo_sapiens AUACUAACAA 10 SOLUTION NMR PDB 11691992 SOLUTION NMR KH;ZF_CCHC 495 1.000000** +SF1 ENSG00000168066 no Homo_sapiens AUUAAC 6 EMSA with WT and mutated sequences and UV crosslinking with recombinant protein S 24722255 UV cross-linking;EMSA KH;ZF_CCHC 1208 1.000000** +SF1 ENSG00000168066 no Homo_sapiens CACAGAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1190 1.000000** +SF1 ENSG00000168066 no Homo_sapiens GACUAAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1199 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UACGAAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1205 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UACUAAC 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1196 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UACUAAC 7 NMR titration using recombinant protein S 11691992 SOLUTION NMR KH;ZF_CCHC 1207 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UACUAAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1197 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UACUAAG 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1203 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UACUAAU 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1198 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UACUAGC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1204 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UACUGAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1201 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UAGUAAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1200 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UAUACUAACAA 11 EMSA R 11691992 EMSA KH;ZF_CCHC 120 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UGCUGAC 7 Footprinting assay, EMSA, competition assay with purified protein S 9512519 EMSA KH;ZF_CCHC 1184 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UGCUGAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1202 1.000000** +SF1 ENSG00000168066 no Homo_sapiens UGCUGCC 7 Footprinting assay, EMSA, competition assay with purified protein S 9512519 EMSA KH;ZF_CCHC 1185 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens ACUAAU 6 UV crosslinking with recombinant protein S 24722255 UV cross-linking KH;ZF_CCHC 1210 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens CACCGAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1189 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens CACUGAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1187 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens CGCUGAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1188 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens GACUAAC 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1191 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens UACUAAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1186 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens UACUAAG 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1192 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens UACUGAC 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1193 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens UAGUAAG 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1194 1.000000** +SF1 ENSG00000168066 yes Homo_sapiens UGCUAAC 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1195 1.000000** +SF2 FBGN0040284 no Drosophila_melanogaster AGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M064_0.6 0.172651** +SF2 FBGN0040284 no Drosophila_melanogaster UGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M064_0.6 0.091729 +SF2 FBGN0040284 no Drosophila_melanogaster GGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M064_0.6 0.134357 +SF3B4 ENSDARG00000018574 no Danio_rerio CAAAAG 6 RNAcompete C 23846655 RNAcompete RRM M195_0.6 0.864306** +SFPQ ENSG00000116560 no Homo_sapiens AAGGACC 7 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s26 0.002147 +SFPQ ENSG00000116560 no Homo_sapiens AGAGGAA 7 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s26 0.019068** +SFPQ ENSG00000116560 no Homo_sapiens AGAGGUA 7 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s26 0.019068** +SFPQ ENSG00000116560 no Homo_sapiens GAAGAGGAA 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.001898 +SFPQ ENSG00000116560 no Homo_sapiens GAAGGA 6 RNA pulldown assay in HeLa nuclear extracts S 24632473 other RRM 1136 1.000000** +SFPQ ENSG00000116560 no Homo_sapiens GAGAGGA 7 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s26 0.002147 +SFPQ ENSG00000116560 no Homo_sapiens GGACUGGGA 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000051 +SFPQ ENSG00000116560 no Homo_sapiens GGAGGAAC 8 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s24 0.001434 +SFPQ ENSG00000116560 no Homo_sapiens GGAGGG 6 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s69 1.000000** +SFPQ ENSG00000116560 no Homo_sapiens GGGGGGGAUC 10 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s72 1.000000** +SFPQ ENSG00000116560 no Homo_sapiens GGUAAGAGC 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000508 +SFPQ ENSG00000116560 no Homo_sapiens GUAAUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.005488 +SFPQ ENSG00000116560 no Homo_sapiens UUAAUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.001529 +SFPQ ENSG00000116560 no Homo_sapiens GUGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.004439 +SFPQ ENSG00000116560 no Homo_sapiens UUGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.001237 +SFPQ ENSG00000116560 no Homo_sapiens GUAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.019272 +SFPQ ENSG00000116560 no Homo_sapiens UUAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.00537 +SFPQ ENSG00000116560 no Homo_sapiens GUGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.01559 +SFPQ ENSG00000116560 no Homo_sapiens UUGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.004344 +SFPQ ENSG00000116560 no Homo_sapiens GUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.003007 +SFPQ ENSG00000116560 no Homo_sapiens UUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.000838 +SFPQ ENSG00000116560 no Homo_sapiens GUGAUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.002432 +SFPQ ENSG00000116560 no Homo_sapiens UUGAUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.000678 +SFPQ ENSG00000116560 no Homo_sapiens GUAGUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.010558 +SFPQ ENSG00000116560 no Homo_sapiens UUAGUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.002942 +SFPQ ENSG00000116560 no Homo_sapiens GUGGUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.00854 +SFPQ ENSG00000116560 no Homo_sapiens UUGGUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.00238 +SFPQ ENSG00000116560 no Homo_sapiens GUAAUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.011803 +SFPQ ENSG00000116560 no Homo_sapiens UUAAUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.003289 +SFPQ ENSG00000116560 no Homo_sapiens GUGAUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.009548 +SFPQ ENSG00000116560 no Homo_sapiens UUGAUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.002661 +SFPQ ENSG00000116560 no Homo_sapiens GUAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.041449** +SFPQ ENSG00000116560 no Homo_sapiens UUAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.01155 +SFPQ ENSG00000116560 no Homo_sapiens GUGGUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.033529 +SFPQ ENSG00000116560 no Homo_sapiens UUGGUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.009343 +SFPQ ENSG00000116560 no Homo_sapiens GUAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.006466 +SFPQ ENSG00000116560 no Homo_sapiens UUAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.001802 +SFPQ ENSG00000116560 no Homo_sapiens GUGAUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.005231 +SFPQ ENSG00000116560 no Homo_sapiens UUGAUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.001457 +SFPQ ENSG00000116560 no Homo_sapiens GUAGUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.022707 +SFPQ ENSG00000116560 no Homo_sapiens UUAGUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.006327 +SFPQ ENSG00000116560 no Homo_sapiens GUGGUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.018368 +SFPQ ENSG00000116560 no Homo_sapiens UUGGUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.005118 +SFPQ ENSG00000116560 no Homo_sapiens UAAGGGAUC 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000192 +SFPQ ENSG00000116560 no Homo_sapiens UAGAGAGG 8 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s24 0.002147 +SFPQ ENSG00000116560 no Homo_sapiens UAGAUCGGAA 10 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s71 1.000000** +SFPQ ENSG00000116560 no Homo_sapiens UAGGGGGAC 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.001267 +SFPQ ENSG00000116560 no Homo_sapiens UCUAAGGAA 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000943 +SFPQ ENSG00000116560 no Homo_sapiens UGCAGGCA 8 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s24 0.003215 +SFPQ ENSG00000116560 no Homo_sapiens UGGAAGAAC 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.003158** +SFPQ ENSG00000116560 no Homo_sapiens UGGAGAGGAAC 11 SELEX R 12403470 SELEX RRM 42 1.000000** +SFPQ ENSG00000116560 no Homo_sapiens UGGAGGAC 8 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s24 0.025340** +SFPQ ENSG00000116560 no Homo_sapiens UGGUCUGGAGC 11 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s70 1.000000** +SFPQ ENSG00000116560 no Homo_sapiens UUGAAGCAA 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000356 +SFPQ ENSG00000116560 no Homo_sapiens UUUUUUU 7 RNA affinity chromatography confirmed by UV crosslink and Western blot using HeLa nuclear extracts. S 8449401 RNA affinity chromatography/purification;UV cross-linking RRM 1135 1.000000** +SHEP FBGN0052423 no Drosophila_melanogaster AUAUUAA 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.159019** +SHEP FBGN0052423 no Drosophila_melanogaster AUAUUUA 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.105032 +SHEP FBGN0052423 no Drosophila_melanogaster AUAUUAU 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.039212 +SHEP FBGN0052423 no Drosophila_melanogaster AUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.0259 +SHEP FBGN0052423 no Drosophila_melanogaster AUAUUAG 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.04372 +SHEP FBGN0052423 no Drosophila_melanogaster AUAUUUG 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.028877 +SHEP FBGN0052423 no Drosophila_melanogaster AAUAUAA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.009745 +SHEP FBGN0052423 no Drosophila_melanogaster UAUAUAA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.035244 +SHEP FBGN0052423 no Drosophila_melanogaster AAUUUAA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.00289 +SHEP FBGN0052423 no Drosophila_melanogaster UAUUUAA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.010452 +SHEP FBGN0052423 no Drosophila_melanogaster AAUAUUA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.032323 +SHEP FBGN0052423 no Drosophila_melanogaster UAUAUUA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.116899** +SHEP FBGN0052423 no Drosophila_melanogaster AAUUUUA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.009585 +SHEP FBGN0052423 no Drosophila_melanogaster UAUUUUA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.034666 +SHEP FBGN0052423 no Drosophila_melanogaster AAUAUAU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002241 +SHEP FBGN0052423 no Drosophila_melanogaster UAUAUAU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.008106 +SHEP FBGN0052423 no Drosophila_melanogaster AAUUUAU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.000665 +SHEP FBGN0052423 no Drosophila_melanogaster UAUUUAU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002404 +SHEP FBGN0052423 no Drosophila_melanogaster AAUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.007434 +SHEP FBGN0052423 no Drosophila_melanogaster UAUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.026886 +SHEP FBGN0052423 no Drosophila_melanogaster AAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002205 +SHEP FBGN0052423 no Drosophila_melanogaster UAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.007973 +SHEP FBGN0052423 no Drosophila_melanogaster AAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002254 +SHEP FBGN0052423 no Drosophila_melanogaster UAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.008151 +SHEP FBGN0052423 no Drosophila_melanogaster AAUUUAG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.000668 +SHEP FBGN0052423 no Drosophila_melanogaster UAUUUAG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002417 +SHEP FBGN0052423 no Drosophila_melanogaster AAUAUUG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.007476 +SHEP FBGN0052423 no Drosophila_melanogaster UAUAUUG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.027037 +SHEP FBGN0052423 no Drosophila_melanogaster AAUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002217 +SHEP FBGN0052423 no Drosophila_melanogaster UAUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.008018 +SHEP FBGN0052423 no Drosophila_melanogaster AUAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.036962 +SHEP FBGN0052423 no Drosophila_melanogaster UUAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.012125 +SHEP FBGN0052423 no Drosophila_melanogaster AUAUUAA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.076833 +SHEP FBGN0052423 no Drosophila_melanogaster UUAUUAA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.025204 +SHEP FBGN0052423 no Drosophila_melanogaster AUAUAUA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.050732 +SHEP FBGN0052423 no Drosophila_melanogaster UUAUAUA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.016642 +SHEP FBGN0052423 no Drosophila_melanogaster AUAUUUA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.105458** +SHEP FBGN0052423 no Drosophila_melanogaster UUAUUUA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.034594 +SM FBGN0003435 no Drosophila_melanogaster ACACACA 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.219398** +SM FBGN0003435 no Drosophila_melanogaster AUACACA 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.070488 +SM FBGN0003435 no Drosophila_melanogaster AGACACA 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.072408 +SM FBGN0003435 no Drosophila_melanogaster ACACACC 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.053115 +SM FBGN0003435 no Drosophila_melanogaster AUACACC 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.017065 +SM FBGN0003435 no Drosophila_melanogaster AGACACC 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.01753 +SM FBGN0003435 no Drosophila_melanogaster ACACACG 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.052507 +SM FBGN0003435 no Drosophila_melanogaster AUACACG 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.01687 +SM FBGN0003435 no Drosophila_melanogaster AGACACG 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.017329 +SMP_067420 SMP_067420 no Schistosoma_mansoni AAAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.025254 +SMP_067420 SMP_067420 no Schistosoma_mansoni UAAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.013403 +SMP_067420 SMP_067420 no Schistosoma_mansoni GAAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.007317 +SMP_067420 SMP_067420 no Schistosoma_mansoni AUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.062058 +SMP_067420 SMP_067420 no Schistosoma_mansoni UUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.032936 +SMP_067420 SMP_067420 no Schistosoma_mansoni GUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.017981 +SMP_067420 SMP_067420 no Schistosoma_mansoni AAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.063882 +SMP_067420 SMP_067420 no Schistosoma_mansoni UAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.033905 +SMP_067420 SMP_067420 no Schistosoma_mansoni GAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.01851 +SMP_067420 SMP_067420 no Schistosoma_mansoni AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.156978** +SMP_067420 SMP_067420 no Schistosoma_mansoni UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.083314 +SMP_067420 SMP_067420 no Schistosoma_mansoni GUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.045484 +SNF FBGN0003449 no Drosophila_melanogaster UAGCAC 6 RNAcompete C 23846655 RNAcompete RRM M136_0.6 0.217054 +SNF FBGN0003449 no Drosophila_melanogaster UUGCAC 6 RNAcompete C 23846655 RNAcompete RRM M136_0.6 0.582562** +SNRNP-U1-70K FBGN0016978 no Drosophila_melanogaster AUCAAG 6 RNAcompete C 23846655 RNAcompete RRM M134_0.6 0.284627** +SNRNP-U1-70K FBGN0016978 no Drosophila_melanogaster AUCAUG 6 RNAcompete C 23846655 RNAcompete RRM M134_0.6 0.097072 +SNRNP-U1-70K FBGN0016978 no Drosophila_melanogaster AUCACG 6 RNAcompete C 23846655 RNAcompete RRM M134_0.6 0.087807 +SNRNP70 ENSG00000104852 no Homo_sapiens AAUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M068_0.6 0.142525 +SNRNP70 ENSG00000104852 no Homo_sapiens GAUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M068_0.6 0.246192** +SNRNP70 ENSG00000104852 no Homo_sapiens AUUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M068_0.6 0.072494 +SNRNP70 ENSG00000104852 no Homo_sapiens GUUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M068_0.6 0.125223 +SNRPA ENSG00000077312 no Homo_sapiens AGGAGAU 7 SELEX C 10094314 SELEX RRM M348_0.6 0.174821** +SNRPA ENSG00000077312 no Homo_sapiens AUUGCAC 7 SELEX C 1717938 SELEX RRM M319_0.6 0.889091** +SNRPA ENSG00000077312 no Homo_sapiens AUUGCAC 7 X-RAY DIFFRACTION PDB 7984237 X-RAY DIFFRACTION RRM 518 1.000000** +SNRPA ENSG00000077312 no Homo_sapiens AUUGCACC 8 SOLUTION NMR PDB 9312034 SOLUTION NMR RRM 346 1.000000** +SNRPA ENSG00000077312 no Homo_sapiens GAGCAGUAGGC 11 SELEX C 10094314 SELEX RRM M347_0.6 0.05671 +SNRPA ENSG00000077312 no Homo_sapiens GAGCAGUAGUC 11 SELEX C 10094314 SELEX RRM M347_0.6 0.050483 +SNRPA ENSG00000077312 no Homo_sapiens GAGCAGUAGGG 11 SELEX C 10094314 SELEX RRM M347_0.6 0.087786** +SNRPA ENSG00000077312 no Homo_sapiens GAGCAGUAGUG 11 SELEX C 10094314 SELEX RRM M347_0.6 0.078148 +SNRPA ENSG00000077312 no Homo_sapiens GGGUAUGCUG 10 SELEX C 10094314 SELEX RRM M346_0.6 0.142501** +SNRPA ENSG00000077312 no Homo_sapiens GAUACCUGCUA 11 SELEX C 10094314 SELEX RRM M345_0.6 0.034984 +SNRPA ENSG00000077312 no Homo_sapiens GUUACCUGCUA 11 SELEX C 10094314 SELEX RRM M345_0.6 0.022283 +SNRPA ENSG00000077312 no Homo_sapiens GAUUCCUGCUA 11 SELEX C 10094314 SELEX RRM M345_0.6 0.067868** +SNRPA ENSG00000077312 no Homo_sapiens GUUUCCUGCUA 11 SELEX C 10094314 SELEX RRM M345_0.6 0.043228 +SNRPA ENSG00000077312 no Homo_sapiens AUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M069_0.6 0.130708 +SNRPA ENSG00000077312 no Homo_sapiens UUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M069_0.6 0.284438** +SNRPA ENSG00000077312 no Homo_sapiens AUGCACG 7 RNAcompete C 23846655 RNAcompete RRM M069_0.6 0.05396 +SNRPA ENSG00000077312 no Homo_sapiens UUGCACG 7 RNAcompete C 23846655 RNAcompete RRM M069_0.6 0.117426 +SNRPB2 ENSG00000125870 no Homo_sapiens GUAUUGCAGU 10 X-RAY DIFFRACTION PDB 9716128 X-RAY DIFFRACTION RRM 504 1.000000** +SRP14 ENSG00000140319 no Homo_sapiens CCUGU 5 X-RAY DIFFRACTION PDB 11089964 X-RAY DIFFRACTION SRP14 342 1.000000** +SRP14 ENSG00000140319 no Homo_sapiens CGCCUGUAG 9 X-RAY DIFFRACTION PDB 11089964 X-RAY DIFFRACTION SRP14 445 1.000000** +SRP14 ENSG00000140319 no Homo_sapiens GUGG 4 X-RAY DIFFRACTION PDB 11089964 X-RAY DIFFRACTION SRP14 344 1.000000** +SRP19 ENSG00000153037 no Homo_sapiens CCUC 4 X-RAY DIFFRACTION PDB 20179341 X-RAY DIFFRACTION SRP19 402 1.000000** +SRP19 ENSG00000153037 no Homo_sapiens GAGC 4 X-RAY DIFFRACTION PDB 11641499 X-RAY DIFFRACTION SRP19 540 1.000000** +SRP19 ENSG00000153037 no Homo_sapiens GGAGC 5 X-RAY DIFFRACTION PDB 20179341 X-RAY DIFFRACTION SRP19 547 1.000000** +SRP19 ENSG00000153037 no Homo_sapiens UCGG 4 X-RAY DIFFRACTION PDB 20179341 X-RAY DIFFRACTION SRP19 471 1.000000** +SRP54 ENSG00000100883 no Homo_sapiens AGGU 4 X-RAY DIFFRACTION PDB 12244299 X-RAY DIFFRACTION SRP54,SRP_SPB 408 1.000000** +SRP54 ENSG00000100883 no Homo_sapiens CCUC 4 X-RAY DIFFRACTION PDB 12244299 X-RAY DIFFRACTION SRP54,SRP_SPB 566 1.000000** +SRP54 ENSG00000100883 no Homo_sapiens GGAGC 5 X-RAY DIFFRACTION PDB 12244299 X-RAY DIFFRACTION SRP54,SRP_SPB 456 1.000000** +SRP54 ENSG00000100883 no Homo_sapiens UCGG 4 X-RAY DIFFRACTION PDB 12244299 X-RAY DIFFRACTION SRP54,SRP_SPB 510 1.000000** +SRP68 ENSG00000167881 no Homo_sapiens CCUC 4 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 493 1.000000** +SRP68 ENSG00000167881 no Homo_sapiens CUAAG 5 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 347 1.000000** +SRP68 ENSG00000167881 no Homo_sapiens GGAGC 5 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 363 1.000000** +SRP68 ENSG00000167881 no Homo_sapiens UAAG 4 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 573 1.000000** +SRP68 ENSG00000167881 no Homo_sapiens UCGG 4 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 501 1.000000** +SRP68 ENSG00000167881 no Homo_sapiens UGCUG 5 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 570 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens AAAAGAGAAG 10 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1230 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens AAAGAAGAA 9 EMSA, UV crosslink competition, and immunoprecipitation in HeLa nuclear extracts. S 11278454 EMSA;UV cross-linking;other RRM 1239 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens AACACGA 7 EMSA with recombinant protein. S 15302913 EMSA RRM 1240 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 1229 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens ACAAGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.004237 +SRSF1 ENSG00000136450 no Homo_sapiens ACGCGAG 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.007886 +SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCA 7 SELEX C 7543047 SELEX RRM M273_0.6 0.298666** +SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.070578** +SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCC 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.035348 +SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCG 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.023604 +SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCU 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.011861 +SRSF1 ENSG00000136450 no Homo_sapiens ACGCUCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.008899 +SRSF1 ENSG00000136450 no Homo_sapiens AGAAGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.075554** +SRSF1 ENSG00000136450 no Homo_sapiens AGAAGAGC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.010118 +SRSF1 ENSG00000136450 no Homo_sapiens AGAAGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.067169 +SRSF1 ENSG00000136450 no Homo_sapiens AGACAGAGAC 10 Competition assay, UV crosslink, immunoprecipitation with HeLa nuclear extracts, EMSA and supershift assays. S 12419255 UV cross-linking;EMSA RRM 1214 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens AGAGCAGG 8 UV cross-linking and immunoprecipitation with HeLa nuclear extract S 9826658 UV cross-linking RRM 1212 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens AGAGGAAGGCGA 12 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 1226 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens AGAUGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.016834 +SRSF1 ENSG00000136450 no Homo_sapiens AGCGAGC 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.000033 +SRSF1 ENSG00000136450 no Homo_sapiens AGGAAAGACC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.000256 +SRSF1 ENSG00000136450 no Homo_sapiens AGGACAGAGC 10 SELEX C 7543047 SELEX RRM M351_0.6 0.063814** +SRSF1 ENSG00000136450 no Homo_sapiens AGGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.067837** +SRSF1 ENSG00000136450 no Homo_sapiens AGGACGAAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.009069 +SRSF1 ENSG00000136450 no Homo_sapiens AGGACGACGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.000482 +SRSF1 ENSG00000136450 no Homo_sapiens AGGACGGAAC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.009069 +SRSF1 ENSG00000136450 no Homo_sapiens AGGACUGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.011353 +SRSF1 ENSG00000136450 no Homo_sapiens AGGAGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.01084 +SRSF1 ENSG00000136450 no Homo_sapiens AGGAGGA 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1234 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens AGGAGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.001709 +SRSF1 ENSG00000136450 no Homo_sapiens AGGAGGAU 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.00129 +SRSF1 ENSG00000136450 no Homo_sapiens AGGAGGUAAC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.000034 +SRSF1 ENSG00000136450 no Homo_sapiens AGGACA 6 RNAcompete C 23846655 RNAcompete RRM M106_0.6 0.367575** +SRSF1 ENSG00000136450 no Homo_sapiens AGGAGA 6 RNAcompete C 23846655 RNAcompete RRM M106_0.6 0.096607 +SRSF1 ENSG00000136450 no Homo_sapiens AGGACC 6 RNAcompete C 23846655 RNAcompete RRM M106_0.6 0.10647 +SRSF1 ENSG00000136450 no Homo_sapiens AGGAGC 6 RNAcompete C 23846655 RNAcompete RRM M106_0.6 0.027983 +SRSF1 ENSG00000136450 no Homo_sapiens AUGACAGAAC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.009071 +SRSF1 ENSG00000136450 no Homo_sapiens AUGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.033953 +SRSF1 ENSG00000136450 no Homo_sapiens AUGACUGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.005682 +SRSF1 ENSG00000136450 no Homo_sapiens CAACCGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000196 +SRSF1 ENSG00000136450 no Homo_sapiens CACACGA 7 NMR R 17668007 NMR RRM 17 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CACACGA 7 UV cross-linking, Chemical shift mapping (NMR) with recombinant protein. S 17668007 UV cross-linking;SOLUTION NMR RRM 1241 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CACAGCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000958 +SRSF1 ENSG00000136450 no Homo_sapiens CACAGCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000479 +SRSF1 ENSG00000136450 no Homo_sapiens CACAGUG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.001064 +SRSF1 ENSG00000136450 no Homo_sapiens CACGGAC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000299 +SRSF1 ENSG00000136450 no Homo_sapiens CAGACAA 7 UV crosslink, immunoprecipitation, SDS-PAGE. S 11925564 UV cross-linking RRM 1228 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CAGACAG 7 Mutagenesis, splicing assays, EMSA, Immunoblot. S 18315555 other;EMSA RRM 1224 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CAGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.01021 +SRSF1 ENSG00000136450 no Homo_sapiens CAGACGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.011189 +SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.030481** +SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.020329 +SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGU 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1235 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.015253 +SRSF1 ENSG00000136450 no Homo_sapiens CAGCGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.010172 +SRSF1 ENSG00000136450 no Homo_sapiens CAGCGGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.006784 +SRSF1 ENSG00000136450 no Homo_sapiens CAGUCGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000084 +SRSF1 ENSG00000136450 no Homo_sapiens CCAACCC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000773 +SRSF1 ENSG00000136450 no Homo_sapiens CCAACCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001351 +SRSF1 ENSG00000136450 no Homo_sapiens CCAACGC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000913 +SRSF1 ENSG00000136450 no Homo_sapiens CCAAUGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.00018 +SRSF1 ENSG00000136450 no Homo_sapiens CCACAGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.002553 +SRSF1 ENSG00000136450 no Homo_sapiens CCACGCU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.002161 +SRSF1 ENSG00000136450 no Homo_sapiens CCACGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.00892 +SRSF1 ENSG00000136450 no Homo_sapiens CCACUGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001915 +SRSF1 ENSG00000136450 no Homo_sapiens CCAUGGU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000274 +SRSF1 ENSG00000136450 no Homo_sapiens CCCAGCC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.002592 +SRSF1 ENSG00000136450 no Homo_sapiens CCCAUGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.004591 +SRSF1 ENSG00000136450 no Homo_sapiens CCCCGAC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000875 +SRSF1 ENSG00000136450 no Homo_sapiens CCCCGCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.009057 +SRSF1 ENSG00000136450 no Homo_sapiens CCCCGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.010703** +SRSF1 ENSG00000136450 no Homo_sapiens CCCGACU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000338 +SRSF1 ENSG00000136450 no Homo_sapiens CCCGUUU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000046 +SRSF1 ENSG00000136450 no Homo_sapiens CCCUGAC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000172 +SRSF1 ENSG00000136450 no Homo_sapiens CCCUGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001954 +SRSF1 ENSG00000136450 no Homo_sapiens CCGACAG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000295 +SRSF1 ENSG00000136450 no Homo_sapiens CCGACCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000789 +SRSF1 ENSG00000136450 no Homo_sapiens CCGACGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000717 +SRSF1 ENSG00000136450 no Homo_sapiens CCGAGCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.001475 +SRSF1 ENSG00000136450 no Homo_sapiens CCGAUGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.002297 +SRSF1 ENSG00000136450 no Homo_sapiens CCGCGCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.011861 +SRSF1 ENSG00000136450 no Homo_sapiens CCGCGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.002287 +SRSF1 ENSG00000136450 no Homo_sapiens CCGCUAU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000203 +SRSF1 ENSG00000136450 no Homo_sapiens CCGGACG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000396 +SRSF1 ENSG00000136450 no Homo_sapiens CCUAGGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000207 +SRSF1 ENSG00000136450 no Homo_sapiens CCUCGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.0009 +SRSF1 ENSG00000136450 no Homo_sapiens CGAAGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.009678 +SRSF1 ENSG00000136450 no Homo_sapiens CGACGCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001393 +SRSF1 ENSG00000136450 no Homo_sapiens CGACGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.003289 +SRSF1 ENSG00000136450 no Homo_sapiens CGAGCGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000268 +SRSF1 ENSG00000136450 no Homo_sapiens CGAGCGG 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.000259 +SRSF1 ENSG00000136450 no Homo_sapiens CGAGGCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.002456 +SRSF1 ENSG00000136450 no Homo_sapiens CGAUGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000821 +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGG 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1236 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.012711 +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGU 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1237 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.009537 +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.003741** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGUA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000751 +SRSF1 ENSG00000136450 no Homo_sapiens CGCGCAA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.001434 +SRSF1 ENSG00000136450 no Homo_sapiens CGCGCCC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000671 +SRSF1 ENSG00000136450 no Homo_sapiens CGCGGAA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.003274 +SRSF1 ENSG00000136450 no Homo_sapiens CGCGGAC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.001192 +SRSF1 ENSG00000136450 no Homo_sapiens CGCGGAG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000277 +SRSF1 ENSG00000136450 no Homo_sapiens CGCGGUU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000342 +SRSF1 ENSG00000136450 no Homo_sapiens CGCGUCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000652 +SRSF1 ENSG00000136450 no Homo_sapiens CGCUCGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.00156 +SRSF1 ENSG00000136450 no Homo_sapiens CGGAAGA 7 Mutagenesis, splicing assays, EMSA, Immunoblot. S 18315555 other;EMSA RRM 1223 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CGGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.020399 +SRSF1 ENSG00000136450 no Homo_sapiens CGGACGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.022358 +SRSF1 ENSG00000136450 no Homo_sapiens CGGACGAAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.002727 +SRSF1 ENSG00000136450 no Homo_sapiens CGGACGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.014912 +SRSF1 ENSG00000136450 no Homo_sapiens CGGAGCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.001608 +SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001975 +SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.015253 +SRSF1 ENSG00000136450 no Homo_sapiens CGGCACA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000422 +SRSF1 ENSG00000136450 no Homo_sapiens CGGCAGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000565 +SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.007461 +SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.010172 +SRSF1 ENSG00000136450 no Homo_sapiens CCAACCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGAACCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCCACCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCACCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCACCCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGACCCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCCCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCCCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCAAGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGAAGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCCAGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCACGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGACGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCAACGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGAACGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCCACGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCACGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCACCGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGACCGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCCGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCAAGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGAAGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCCAGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCACGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGACGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CCCACCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCACCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGACCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGACCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCUCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCUCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGUCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGUCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGCCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCGCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCGCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGGCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGGCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCAGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGAGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGAGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCUGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCUGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGUGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGUGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGCGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCGGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCGGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGGGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGGGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCACGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCACGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGACGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGACGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCUCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCUCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGUCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGUCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGCCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCGCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCGCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGGCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGGCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCAGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGAGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCUGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCUGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGUGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGUGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGCGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCGGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCGGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGGGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGGGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCACCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCACCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGACCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGACCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCUCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCUCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGUCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGUCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGCCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCGCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCGCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGGCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGGCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCAGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGAGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGAGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCUGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCUGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGUGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGUGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGCGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCGGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCGGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGGGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGGGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCACGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCACGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGACGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGACGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCUCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCUCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGUCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGUCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGCCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCGCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCGCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGGCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGGCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCAGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGAGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCUGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCUGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGUGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGUGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCCGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGCGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCCGGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGCGGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CCGGGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CGGGGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** +SRSF1 ENSG00000136450 no Homo_sapiens CUACGAA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000256 +SRSF1 ENSG00000136450 no Homo_sapiens CUCAGGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.003473 +SRSF1 ENSG00000136450 no Homo_sapiens CUCCGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.002316 +SRSF1 ENSG00000136450 no Homo_sapiens CUCGUGU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000036 +SRSF1 ENSG00000136450 no Homo_sapiens CUGAACA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000069 +SRSF1 ENSG00000136450 no Homo_sapiens CUGACUA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.000682 +SRSF1 ENSG00000136450 no Homo_sapiens GAAGAA 6 CLIP-seq C 19116412 genome-wide in vivo immunoprecipitation RRM 40 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1225 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAAGAAGAA 9 Competition assay, UV crosslink, immunoprecipitation with HeLa nuclear extracts, EMSA and supershift assays. S 12419255 UV cross-linking;EMSA RRM 1215 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAAGAAGAA 9 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 1227 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GACAGGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.004947 +SRSF1 ENSG00000136450 no Homo_sapiens GACCCGG 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1238 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GACCCGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.001211 +SRSF1 ENSG00000136450 no Homo_sapiens GACGAAC 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.000014 +SRSF1 ENSG00000136450 no Homo_sapiens GACUGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.000828 +SRSF1 ENSG00000136450 no Homo_sapiens GAGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.01021 +SRSF1 ENSG00000136450 no Homo_sapiens GAGACGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.008703 +SRSF1 ENSG00000136450 no Homo_sapiens GAGCGAG 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.000574 +SRSF1 ENSG00000136450 no Homo_sapiens GAGCGGA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.000574 +SRSF1 ENSG00000136450 no Homo_sapiens GAGGAAC 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.000149 +SRSF1 ENSG00000136450 no Homo_sapiens GAGGAAGAA 9 UV crosslink, competition assay, immunoprecipitation S 7651409 UV cross-linking RRM 1213 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAGGAGGA 8 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1231 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAUACGAAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.000073 +SRSF1 ENSG00000136450 no Homo_sapiens GAUGAAGAG 9 UV crosslink, immunoprecipitation. S 10523623 UV cross-linking RRM 1211 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GCCCACU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000017 +SRSF1 ENSG00000136450 no Homo_sapiens GCCGGAG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000197 +SRSF1 ENSG00000136450 no Homo_sapiens GCGAGCG 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.00086 +SRSF1 ENSG00000136450 no Homo_sapiens GCGCGCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.035348 +SRSF1 ENSG00000136450 no Homo_sapiens GGAAAGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.004152 +SRSF1 ENSG00000136450 no Homo_sapiens GGAACAGC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.000625 +SRSF1 ENSG00000136450 no Homo_sapiens GGAAUGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.004152 +SRSF1 ENSG00000136450 no Homo_sapiens GGACGAAU 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.000729 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGA 6 RNAcompete C 23846655 RNAcompete RRM M103_0.6 0.463029** +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.005447 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAC 7 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1232 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAG 7 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1233 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GGACGAA 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.037896 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.131858 +SRSF1 ENSG00000136450 no Homo_sapiens GGACGGA 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.02509 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.087301 +SRSF1 ENSG00000136450 no Homo_sapiens GGACGAC 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.02001 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAC 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.069624 +SRSF1 ENSG00000136450 no Homo_sapiens GGACGGC 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.013248 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGGC 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.046097 +SRSF1 ENSG00000136450 no Homo_sapiens GGACGAG 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.038634 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.134427** +SRSF1 ENSG00000136450 no Homo_sapiens GGACGGG 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.025579 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.089002 +SRSF1 ENSG00000136450 no Homo_sapiens GGAUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1222 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GGAUGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.016234 +SRSF1 ENSG00000136450 no Homo_sapiens GGCACGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.003629 +SRSF1 ENSG00000136450 no Homo_sapiens GGGACGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.004355 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.056703 +SRSF1 ENSG00000136450 no Homo_sapiens GGGGGAA 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.024908 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAC 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.062425 +SRSF1 ENSG00000136450 no Homo_sapiens GGGGGAC 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.027421 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.146899** +SRSF1 ENSG00000136450 no Homo_sapiens GGGGGAG 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.064527 +SRSF1 ENSG00000136450 no Homo_sapiens GAAGGA 6 RNAcompete C 23846655 RNAcompete RRM M102_0.6 0.123105 +SRSF1 ENSG00000136450 no Homo_sapiens GGAGGA 6 RNAcompete C 23846655 RNAcompete RRM M102_0.6 0.335093** +SRSF1 ENSG00000136450 no Homo_sapiens GUGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.01021 +SRSF1 ENSG00000136450 no Homo_sapiens GUGACGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.00317 +SRSF1 ENSG00000136450 no Homo_sapiens AGAAGAAC 8 SELEX C 7543047 SELEX RRM M272_0.6 0.108860** +SRSF1 ENSG00000136450 no Homo_sapiens GGAAGAAC 8 SELEX C 7543047 SELEX RRM M272_0.6 0.059378 +SRSF1 ENSG00000136450 no Homo_sapiens UAGACAGAAC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.003634 +SRSF1 ENSG00000136450 no Homo_sapiens UAGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.013601 +SRSF1 ENSG00000136450 no Homo_sapiens UAUUACGGAAU 11 RNA interference. S 19111562 other RRM 1217 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens UCGCACA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.00887 +SRSF1 ENSG00000136450 no Homo_sapiens UCGGGCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.007886 +SRSF1 ENSG00000136450 no Homo_sapiens UGAACCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.00003 +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.032442 +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGGAC 8 SOLUTION NMR PDB 23836656 SOLUTION NMR RRM 375 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.008131 +SRSF1 ENSG00000136450 no Homo_sapiens UGGAAAG 7 Mutational analysis and pull-down assay and immunoblot with HeLa nuclear extract. S 17144911 other RRM 1216 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens UGGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.027176 +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGAA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGAGAA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGAA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGUGAA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGCA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGAGCA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGCA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGUGCA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGGA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGAGGA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGGA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGUGGA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGAU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGAGAU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGAU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGUGAU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGCU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGAGCU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGCU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGUGCU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGGU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGAGGU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGGU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGUGGU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGAC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGAGAC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGAC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGUGAC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGCC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGAGCC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGCC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGUGCC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAAGGC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGAGGC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGGC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGGUGGC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** +SRSF1 ENSG00000136450 no Homo_sapiens UGUAGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.002079 +SRSF1 ENSG00000136450 no Homo_sapiens UUGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.013601 +SRSF1 ENSG00000136450 yes Homo_sapiens GCAUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1218 1.000000** +SRSF1 ENSG00000136450 yes Homo_sapiens GGAUAU 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1221 1.000000** +SRSF1 ENSG00000136450 yes Homo_sapiens GGAUUC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1219 1.000000** +SRSF1 ENSG00000136450 yes Homo_sapiens GGGUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1220 1.000000** +SRSF10 ENSG00000188529 no Homo_sapiens AAAAGAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.080107 +SRSF10 ENSG00000188529 no Homo_sapiens AAAGAAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.179644** +SRSF10 ENSG00000188529 no Homo_sapiens AAAGAAG 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.045247 +SRSF10 ENSG00000188529 no Homo_sapiens AAAGACAAA 9 EMSA and RNase protection assay with recombinant protein. S 18794844 EMSA RRM 1262 1.000000** +SRSF10 ENSG00000188529 no Homo_sapiens ACAAAGACAAA 11 SELEX of random 20nt with recombinant protein with mitotic phase HeLa extracts, Western Blot. Consensus motif: ACAAAGACAAA. S 12419250 SELEX RRM s98 1.000000** +SRSF10 ENSG00000188529 no Homo_sapiens AGACAA 6 EMSA R 18794844 EMSA RRM 147 1.000000** +SRSF10 ENSG00000188529 no Homo_sapiens AGACAA 6 EMSA and RNase protection assay with recombinant protein. S 18794844 EMSA RRM 1259 1.000000** +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.045247 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M087_0.6 0.148236** +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M087_0.6 0.111486 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M087_0.6 0.090172 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M087_0.6 0.067817 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.176277** +SRSF10 ENSG00000188529 no Homo_sapiens AGAGACA 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.063339 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.06158 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAC 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.086105 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGACC 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.030939 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGC 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.03008 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.227285** +SRSF10 ENSG00000188529 no Homo_sapiens AGAGACA 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.121921 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.07567 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAC 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.09587 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGACC 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.051427 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGC 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.031918 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.075601 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGACG 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.040554 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.02517 +SRSF10 ENSG00000188529 no Homo_sapiens AAAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.01354 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.033047 +SRSF10 ENSG00000188529 no Homo_sapiens AAAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.005547 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.01354 +SRSF10 ENSG00000188529 no Homo_sapiens AAAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.025854 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.063103 +SRSF10 ENSG00000188529 no Homo_sapiens AAAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.010593 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.025854 +SRSF10 ENSG00000188529 no Homo_sapiens AAAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.020493 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.050018 +SRSF10 ENSG00000188529 no Homo_sapiens AAAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.008396 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.020493 +SRSF10 ENSG00000188529 no Homo_sapiens AAAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.039131 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.095509** +SRSF10 ENSG00000188529 no Homo_sapiens AAAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.016032 +SRSF10 ENSG00000188529 no Homo_sapiens AGAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.039131 +SRSF10 ENSG00000188529 no Homo_sapiens GAAAGAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.020177 +SRSF10 ENSG00000188529 no Homo_sapiens GACAAA 6 EMSA R 18794844 EMSA RRM 163 1.000000** +SRSF10 ENSG00000188529 no Homo_sapiens GACAAA 6 EMSA and RNase protection assay with recombinant protein. S 18794844 EMSA RRM 1260 1.000000** +SRSF11 ENSG00000116754 no Homo_sapiens AAGAAG 6 Positive clones identified by fluorescence-activated cell sorting and visual inspection. Confirmed by UV crosslink, immunoprecipitation, SDS-PAGE. S 16943417 other RRM 1266 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens AAAAGAGAAG 10 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1180 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens AAGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.033246 +SRSF2 ENSG00000161547 no Homo_sapiens AAGCAGUAGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.023103 +SRSF2 ENSG00000161547 no Homo_sapiens ACGAGAG 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.015781 +SRSF2 ENSG00000161547 no Homo_sapiens ACGAGAGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001624 +SRSF2 ENSG00000161547 no Homo_sapiens ACGAGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.055036 +SRSF2 ENSG00000161547 no Homo_sapiens AGAAGCGGA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.000173 +SRSF2 ENSG00000161547 no Homo_sapiens AGAGAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.000997 +SRSF2 ENSG00000161547 no Homo_sapiens AGAGGAAGGCGA 12 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 1177 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGAU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.012317 +SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGGA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.010275 +SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.037583** +SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.022565 +SRSF2 ENSG00000161547 no Homo_sapiens AGCAGUGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.006028 +SRSF2 ENSG00000161547 no Homo_sapiens AGCCCCCA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000208 +SRSF2 ENSG00000161547 no Homo_sapiens AGCCGAGAA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.005138 +SRSF2 ENSG00000161547 no Homo_sapiens AGCCUCAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.0002 +SRSF2 ENSG00000161547 no Homo_sapiens AGCGGAGAA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001294 +SRSF2 ENSG00000161547 no Homo_sapiens AGCUCCCA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000166 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAA 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.021102 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAAUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.009972 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAAUG 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.002998 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAG 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.041995 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAGGU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.00925 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.146459** +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAUAA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001826 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGCGUG 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.002269 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGGA 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.001922 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGUAUC 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.000535 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGUGAC 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.00165 +SRSF2 ENSG00000161547 no Homo_sapiens AGGCAGU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.000462 +SRSF2 ENSG00000161547 no Homo_sapiens AGGCAGUAGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.01388 +SRSF2 ENSG00000161547 no Homo_sapiens AGGCGAGCA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001295 +SRSF2 ENSG00000161547 no Homo_sapiens AGGCGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.014114 +SRSF2 ENSG00000161547 no Homo_sapiens AGGCGUGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.002264 +SRSF2 ENSG00000161547 no Homo_sapiens AGGGUAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.00207 +SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGUA 9 SELEX C 7543047 SELEX RRM M352_0.6 0.045158 +SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAGUA 9 SELEX C 7543047 SELEX RRM M352_0.6 0.047943** +SRSF2 ENSG00000161547 no Homo_sapiens AGUAG 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 1163 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens AGUCGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.003708 +SRSF2 ENSG00000161547 no Homo_sapiens AGUUCCAGCC 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.00075 +SRSF2 ENSG00000161547 no Homo_sapiens AGUUCCAGGG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.00075 +SRSF2 ENSG00000161547 no Homo_sapiens AUGAAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.00068 +SRSF2 ENSG00000161547 no Homo_sapiens CAGAGGU 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.002298 +SRSF2 ENSG00000161547 no Homo_sapiens CAGUAGA 7 RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis. S 14703516 RNA affinity chromatography/purification RRM 1170 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens CGAACGAGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.000045 +SRSF2 ENSG00000161547 no Homo_sapiens CGCAGGG 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.014274** +SRSF2 ENSG00000161547 no Homo_sapiens CGCAGGU 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.014274** +SRSF2 ENSG00000161547 no Homo_sapiens CGCCCUUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000068 +SRSF2 ENSG00000161547 no Homo_sapiens CGCUGCUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000145 +SRSF2 ENSG00000161547 no Homo_sapiens CGGAGAGAA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001634 +SRSF2 ENSG00000161547 no Homo_sapiens CGUGAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.001493 +SRSF2 ENSG00000161547 no Homo_sapiens CUAGACUAGA 10 RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis. S 14703516 RNA affinity chromatography/purification RRM 1169 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1174 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GAAGAAGAA 9 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 1178 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GAAUACCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000267 +SRSF2 ENSG00000161547 no Homo_sapiens GACCCGG 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.001083 +SRSF2 ENSG00000161547 no Homo_sapiens GACCGGUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001566 +SRSF2 ENSG00000161547 no Homo_sapiens GACCUGCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000553 +SRSF2 ENSG00000161547 no Homo_sapiens GACGGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.000841 +SRSF2 ENSG00000161547 no Homo_sapiens GACUAGAA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000159 +SRSF2 ENSG00000161547 no Homo_sapiens GACUCAAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000349 +SRSF2 ENSG00000161547 no Homo_sapiens GAGCACUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000095 +SRSF2 ENSG00000161547 no Homo_sapiens GAGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.077427** +SRSF2 ENSG00000161547 no Homo_sapiens GAGCAGUAGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.053805 +SRSF2 ENSG00000161547 no Homo_sapiens GAGCAGUGGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.005429 +SRSF2 ENSG00000161547 no Homo_sapiens GAGGAG 6 Competition assays with recombinant protein S 16990281 other RRM 1171 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GAGGAGGA 8 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1181 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001032 +SRSF2 ENSG00000161547 no Homo_sapiens GAUCGCUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001349 +SRSF2 ENSG00000161547 no Homo_sapiens GAUGAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.001357 +SRSF2 ENSG00000161547 no Homo_sapiens GAUGGAGGA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.00334 +SRSF2 ENSG00000161547 no Homo_sapiens GAUUAGUG 8 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 1168 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCAGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.013722 +SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCCU 8 Mutagenesis, splicing assays, EMSA, Immunoblot. S 19843576 other;EMSA RRM 1173 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCUGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.0103 +SRSF2 ENSG00000161547 no Homo_sapiens GAUUGAUG 8 Mutagenesis, splicing assays, EMSA, Immunoblot. S 19843576 other;EMSA RRM 1172 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GCGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.031064 +SRSF2 ENSG00000161547 no Homo_sapiens GCGCAGUAGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.021586 +SRSF2 ENSG00000161547 no Homo_sapiens GCUCGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.013354 +SRSF2 ENSG00000161547 no Homo_sapiens GGAACCAGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.008244 +SRSF2 ENSG00000161547 no Homo_sapiens GGACCGUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000681 +SRSF2 ENSG00000161547 no Homo_sapiens GGACGCUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.002226 +SRSF2 ENSG00000161547 no Homo_sapiens GGACUGUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000314 +SRSF2 ENSG00000161547 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 1179 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GGAGGAC 7 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1182 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GGAGGAG 7 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1183 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GGAGAA 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.152691 +SRSF2 ENSG00000161547 no Homo_sapiens GGAGUA 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.077519 +SRSF2 ENSG00000161547 no Homo_sapiens GGAGAU 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.144765 +SRSF2 ENSG00000161547 no Homo_sapiens GGAGUU 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.073495 +SRSF2 ENSG00000161547 no Homo_sapiens GGAGAG 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.195196** +SRSF2 ENSG00000161547 no Homo_sapiens GGAGUG 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.099098 +SRSF2 ENSG00000161547 no Homo_sapiens GGAUCCGG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000137 +SRSF2 ENSG00000161547 no Homo_sapiens GGAUGGAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000513 +SRSF2 ENSG00000161547 no Homo_sapiens GGCCAAA 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.000544 +SRSF2 ENSG00000161547 no Homo_sapiens GGCCCACA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000577 +SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.009151** +SRSF2 ENSG00000161547 no Homo_sapiens GGCCGCAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.003316 +SRSF2 ENSG00000161547 no Homo_sapiens GGCCUCC 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.000273 +SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCAA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001327 +SRSF2 ENSG00000161547 no Homo_sapiens GGCUCGUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.004476 +SRSF2 ENSG00000161547 no Homo_sapiens GGCUGAUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001567 +SRSF2 ENSG00000161547 no Homo_sapiens GGGAAUGCCG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.006742 +SRSF2 ENSG00000161547 no Homo_sapiens GGGAAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.036928 +SRSF2 ENSG00000161547 no Homo_sapiens GGGAGCC 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.000298 +SRSF2 ENSG00000161547 no Homo_sapiens GGGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.046518 +SRSF2 ENSG00000161547 no Homo_sapiens GGGUAAGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.028731 +SRSF2 ENSG00000161547 no Homo_sapiens GGGUACGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.009641 +SRSF2 ENSG00000161547 no Homo_sapiens GGGUAGGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.009641 +SRSF2 ENSG00000161547 no Homo_sapiens GGGUAUGCCG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.0157 +SRSF2 ENSG00000161547 no Homo_sapiens GGGUAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.086001** +SRSF2 ENSG00000161547 no Homo_sapiens GGGUGAGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.00223 +SRSF2 ENSG00000161547 no Homo_sapiens GGUCAGUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001587 +SRSF2 ENSG00000161547 no Homo_sapiens GGUCGCCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.002182 +SRSF2 ENSG00000161547 no Homo_sapiens GGUGAUGCGU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.000105 +SRSF2 ENSG00000161547 no Homo_sapiens GGUUAAUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000578 +SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCAGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.012123 +SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCAGUU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.006935 +SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCUGUUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.006188 +SRSF2 ENSG00000161547 no Homo_sapiens GGUUGGCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001067 +SRSF2 ENSG00000161547 no Homo_sapiens GGUUGUUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000331 +SRSF2 ENSG00000161547 no Homo_sapiens GUAACCAGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.016447** +SRSF2 ENSG00000161547 no Homo_sapiens GUACGAGGA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.005853 +SRSF2 ENSG00000161547 no Homo_sapiens GUAUCCCGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.004143 +SRSF2 ENSG00000161547 no Homo_sapiens GUCCCCUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.002499 +SRSF2 ENSG00000161547 no Homo_sapiens GUCCUCAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000544 +SRSF2 ENSG00000161547 no Homo_sapiens GUCCUCCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000679 +SRSF2 ENSG00000161547 no Homo_sapiens GUCUAACG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000176 +SRSF2 ENSG00000161547 no Homo_sapiens GUGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.015609 +SRSF2 ENSG00000161547 no Homo_sapiens GUUACCAGUCC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.000398 +SRSF2 ENSG00000161547 no Homo_sapiens GUUACGUGUAA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.000299 +SRSF2 ENSG00000161547 no Homo_sapiens GUUCCAGAU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.005353 +SRSF2 ENSG00000161547 no Homo_sapiens GUUCCAGGU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.015954 +SRSF2 ENSG00000161547 no Homo_sapiens GUUCCAGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.031854 +SRSF2 ENSG00000161547 no Homo_sapiens GUUCGAGUA 9 SELEX C 7543047 SELEX RRM M274_0.6 0.151544** +SRSF2 ENSG00000161547 no Homo_sapiens GUUCGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.092685** +SRSF2 ENSG00000161547 no Homo_sapiens GUUCGAGUG 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.018685 +SRSF2 ENSG00000161547 no Homo_sapiens GUUCGAGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.074185 +SRSF2 ENSG00000161547 no Homo_sapiens GUUCUGUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000143 +SRSF2 ENSG00000161547 no Homo_sapiens GUUUCGAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000303 +SRSF2 ENSG00000161547 no Homo_sapiens UCCAGU 6 SOLUTION NMR PDB 22002536 SOLUTION NMR RRM 439 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens UCGAGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.013811 +SRSF2 ENSG00000161547 no Homo_sapiens UCGUAAGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.000266 +SRSF2 ENSG00000161547 no Homo_sapiens UGAUCGAGUA 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.002036 +SRSF2 ENSG00000161547 no Homo_sapiens UGCAGAGUG 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.0006 +SRSF2 ENSG00000161547 no Homo_sapiens UGCCGCC 7 SELEX winner confermed by immublotting in HeLa nuclear extracts. S 10022858 SELEX RRM s37 0.245122** +SRSF2 ENSG00000161547 no Homo_sapiens UGCGGUC 7 SELEX winner confermed by immublotting in HeLa nuclear extracts. S 10022858 SELEX RRM s37 0.245122** +SRSF2 ENSG00000161547 no Homo_sapiens UGCUGUU 7 UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts. S 9858550 UV cross-linking RRM 1176 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens UGGAGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.036752 +SRSF2 ENSG00000161547 no Homo_sapiens UGGAGU 6 SOLUTION NMR PDB 22002536 SOLUTION NMR RRM 502 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens UGGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.006702 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUACUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000027 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGAA 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.034537 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.060374** +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGCU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.025924 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.01483 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCGGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.004687 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGAA 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.023037 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.040272 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGUA 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.013178 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGUGCG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.000576 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGAU 10 SELEX C 10094314 SELEX RRM M332_0.6 0.115706** +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGAU 10 SELEX C 10094314 SELEX RRM M332_0.6 0.097547 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGUU 10 SELEX C 10094314 SELEX RRM M332_0.6 0.05445 +SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGUU 10 SELEX C 10094314 SELEX RRM M332_0.6 0.045904 +SRSF2 ENSG00000161547 yes Homo_sapiens AGAAG 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 1160 1.000000** +SRSF2 ENSG00000161547 yes Homo_sapiens AGCAG 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 1161 1.000000** +SRSF2 ENSG00000161547 yes Homo_sapiens AGCUGUU 7 UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts. S 9858550 UV cross-linking RRM 1175 1.000000** +SRSF2 ENSG00000161547 yes Homo_sapiens AGGAG 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 1162 1.000000** +SRSF2 ENSG00000161547 yes Homo_sapiens AUCCCGUG 8 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 1164 1.000000** +SRSF2 ENSG00000161547 yes Homo_sapiens CACCUCCG 8 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 1165 1.000000** +SRSF2 ENSG00000161547 yes Homo_sapiens GAAUCCCG 8 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 1166 1.000000** +SRSF2 ENSG00000161547 yes Homo_sapiens GUAAGUACGC 10 RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis. S 14703516 RNA affinity chromatography/purification RRM 1167 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens AACUUUAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.002188 +SRSF3 ENSG00000112081 no Homo_sapiens ACAUCAUCU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.000338 +SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.037441 +SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.038719 +SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGAUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.060812** +SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGCUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.007635 +SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGUUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.007279 +SRSF3 ENSG00000112081 no Homo_sapiens ACAUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.000245 +SRSF3 ENSG00000112081 no Homo_sapiens ACUACGACG 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.00027 +SRSF3 ENSG00000112081 no Homo_sapiens ACUACGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.003047 +SRSF3 ENSG00000112081 no Homo_sapiens ACUUCGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.008826 +SRSF3 ENSG00000112081 no Homo_sapiens AUCAUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.009267 +SRSF3 ENSG00000112081 no Homo_sapiens AUCUUCAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.017362 +SRSF3 ENSG00000112081 no Homo_sapiens AUCUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.034689 +SRSF3 ENSG00000112081 no Homo_sapiens CACAUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.012505 +SRSF3 ENSG00000112081 no Homo_sapiens CACUACAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.001391 +SRSF3 ENSG00000112081 no Homo_sapiens CACUUCAG 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.004723 +SRSF3 ENSG00000112081 no Homo_sapiens CACUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.046808** +SRSF3 ENSG00000112081 no Homo_sapiens CAUC 4 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1253 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens CAUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.038284 +SRSF3 ENSG00000112081 no Homo_sapiens CAUCAU 6 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1249 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens CCUCGUCC 8 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1245 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens CCUCGUCC 8 SELEX winner confermed by immublotting in Hela nuclear extracts. S 10022858 SELEX RRM s81 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens CCUCUUCC 8 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1244 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens CGAUCGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.000201 +SRSF3 ENSG00000112081 no Homo_sapiens CGCUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.005247 +SRSF3 ENSG00000112081 no Homo_sapiens CUACAAA 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.012587 +SRSF3 ENSG00000112081 no Homo_sapiens CUACAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.124753** +SRSF3 ENSG00000112081 no Homo_sapiens CUACAAU 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.012587 +SRSF3 ENSG00000112081 no Homo_sapiens CUACAGC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.011444 +SRSF3 ENSG00000112081 no Homo_sapiens CUACGAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.02505 +SRSF3 ENSG00000112081 no Homo_sapiens CUCUUCAC 8 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1246 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens CUCUUCAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.020827 +SRSF3 ENSG00000112081 no Homo_sapiens CUUCAAC 7 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1247 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens CUUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.08916 +SRSF3 ENSG00000112081 no Homo_sapiens CUUCAC 6 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1250 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens GACUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.015655 +SRSF3 ENSG00000112081 no Homo_sapiens GACUUCUU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.000878 +SRSF3 ENSG00000112081 no Homo_sapiens GAUC 4 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1254 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens GAUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.005516 +SRSF3 ENSG00000112081 no Homo_sapiens UACAUCAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.006259 +SRSF3 ENSG00000112081 no Homo_sapiens UACUUCAA 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.014075 +SRSF3 ENSG00000112081 no Homo_sapiens UAUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.0219 +SRSF3 ENSG00000112081 no Homo_sapiens UCAACGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.015271 +SRSF3 ENSG00000112081 no Homo_sapiens UCAACGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.015792 +SRSF3 ENSG00000112081 no Homo_sapiens UCAACGAUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.024803 +SRSF3 ENSG00000112081 no Homo_sapiens UCACAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.010282 +SRSF3 ENSG00000112081 no Homo_sapiens UCAGAGAUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.00024 +SRSF3 ENSG00000112081 no Homo_sapiens UCAUC 5 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1251 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGACA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.008353 +SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.045752 +SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGAUA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.013566 +SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.047313 +SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGCUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.00933 +SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGUUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.008895 +SRSF3 ENSG00000112081 no Homo_sapiens UCUUCAC 7 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1248 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens UCUUCGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.011154 +SRSF3 ENSG00000112081 no Homo_sapiens UGUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.007349 +SRSF3 ENSG00000112081 no Homo_sapiens UUACGAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.01433 +SRSF3 ENSG00000112081 no Homo_sapiens UUCAC 5 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1252 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens UUCAUCAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.005564 +SRSF3 ENSG00000112081 no Homo_sapiens UUCUCCAA 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.000743 +SRSF3 ENSG00000112081 no Homo_sapiens UUCUUCAA 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.012513 +SRSF3 ENSG00000112081 no Homo_sapiens UUCUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.041613 +SRSF3 ENSG00000112081 no Homo_sapiens UUCUUCAUCC 10 In vivo splicing with deletion and mutation analysis. RNA pulldown assay in HeLa nuclear extracts. S 24321384 other RRM 1255 1.000000** +SRSF4 ENSG00000116350 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1275 1.000000** +SRSF4 ENSG00000116350 no Homo_sapiens GAGGAAGAA 9 UV crosslink, competition assay, immunoprecipitation S 7651409 UV cross-linking RRM 1274 1.000000** +SRSF5 ENSG00000100650 no Homo_sapiens AAAGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.008385 +SRSF5 ENSG00000100650 no Homo_sapiens ACACC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.014835 +SRSF5 ENSG00000100650 no Homo_sapiens ACACG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.016687 +SRSF5 ENSG00000100650 no Homo_sapiens ACAGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.110781 +SRSF5 ENSG00000100650 no Homo_sapiens ACAGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.124611** +SRSF5 ENSG00000100650 no Homo_sapiens ACCGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.027799 +SRSF5 ENSG00000100650 no Homo_sapiens ACGGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.041629 +SRSF5 ENSG00000100650 no Homo_sapiens ACGGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.046827 +SRSF5 ENSG00000100650 no Homo_sapiens ACUGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.05546 +SRSF5 ENSG00000100650 no Homo_sapiens ACUGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.062384 +SRSF5 ENSG00000100650 no Homo_sapiens AGAGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.008385 +SRSF5 ENSG00000100650 no Homo_sapiens AUAAAGG 7 Mutagenesis, splicing assays, EMSA, Immunoblot. S 19843576 other;EMSA RRM 1264 1.000000** +SRSF5 ENSG00000100650 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1265 1.000000** +SRSF5 ENSG00000100650 no Homo_sapiens GAGGAAGAA 9 UV crosslink, competition assay, immunoprecipitation S 7651409 UV cross-linking RRM 1263 1.000000** +SRSF5 ENSG00000100650 no Homo_sapiens GCAGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.030286 +SRSF5 ENSG00000100650 no Homo_sapiens GCAGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.034067 +SRSF5 ENSG00000100650 no Homo_sapiens GCUGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.015162 +SRSF5 ENSG00000100650 no Homo_sapiens UCCGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.0076 +SRSF5 ENSG00000100650 no Homo_sapiens UCGGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.012802 +SRSF5 ENSG00000100650 no Homo_sapiens UCUGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.017055 +SRSF6 ENSG00000124193 no Homo_sapiens ACCGGG 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.00513 +SRSF6 ENSG00000124193 no Homo_sapiens ACCGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.026276 +SRSF6 ENSG00000124193 no Homo_sapiens AGCGGA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.015339 +SRSF6 ENSG00000124193 no Homo_sapiens AUCGUA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.003313 +SRSF6 ENSG00000124193 no Homo_sapiens CACGGA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.005766 +SRSF6 ENSG00000124193 no Homo_sapiens CCCGGC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.015345 +SRSF6 ENSG00000124193 no Homo_sapiens CGCGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.019723 +SRSF6 ENSG00000124193 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1270 1.000000** +SRSF6 ENSG00000124193 no Homo_sapiens GACGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.009878 +SRSF6 ENSG00000124193 no Homo_sapiens GAGGAAGAA 9 UV crosslink, competition assay, immunoprecipitation S 7651409 UV cross-linking RRM 1267 1.000000** +SRSF6 ENSG00000124193 no Homo_sapiens GAUCAACCUGGC 12 EMSA, UV crosslink. S 12549914 UV cross-linking;EMSA RRM 1273 1.000000** +SRSF6 ENSG00000124193 no Homo_sapiens GCCGGA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.011514 +SRSF6 ENSG00000124193 no Homo_sapiens GCCGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.019723 +SRSF6 ENSG00000124193 no Homo_sapiens UACGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.019723 +SRSF6 ENSG00000124193 no Homo_sapiens UCCGGA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.022989 +SRSF6 ENSG00000124193 no Homo_sapiens UGCGGC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.03064 +SRSF6 ENSG00000124193 no Homo_sapiens UGCGUA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.029548 +SRSF6 ENSG00000124193 no Homo_sapiens UGCGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.039381** +SRSF6 ENSG00000124193 no Homo_sapiens UGCGUG 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.009882 +SRSF6 ENSG00000124193 no Homo_sapiens UGUGGA 6 Mutagenesis, splicing assays, EMSA, Immunoblot. S 18315555 other;EMSA RRM 1269 1.000000** +SRSF6 ENSG00000124193 yes Homo_sapiens GCAGCACCUGGC 12 EMSA, UV crosslink. S 12549914 UV cross-linking;EMSA RRM 1271 1.000000** +SRSF6 ENSG00000124193 yes Homo_sapiens GCUCAUCCUGGC 12 EMSA, UV crosslink. S 12549914 UV cross-linking;EMSA RRM 1272 1.000000** +SRSF6 ENSG00000124193 yes Homo_sapiens UGCGGA 6 Mutagenesis, splicing assays, EMSA, Immunoblot. S 18315555 other;EMSA RRM 1268 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens AAAGGACAAA 10 S100 complementation S 10022858 other RRM 590 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens ACGAAUGAU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.000998 +SRSF7 ENSG00000115875 no Homo_sapiens ACGACG 6 RNAcompete C 23846655 RNAcompete RRM M071_0.6 0.564939** +SRSF7 ENSG00000115875 no Homo_sapiens ACGAGACUA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.000215 +SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.041464 +SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.066293** +SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.041464 +SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAC 9 SELEX C 10094314 SELEX RRM M353_0.6 0.095254** +SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAU 9 SELEX C 10094314 SELEX RRM M353_0.6 0.073102 +SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAUCA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.001914 +SRSF7 ENSG00000115875 no Homo_sapiens ACGAUAGAA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.017297 +SRSF7 ENSG00000115875 no Homo_sapiens ACGAUAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.027654 +SRSF7 ENSG00000115875 no Homo_sapiens ACGAUUGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.007915 +SRSF7 ENSG00000115875 no Homo_sapiens ACGAUUGAU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.004951 +SRSF7 ENSG00000115875 no Homo_sapiens ACUAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.003936 +SRSF7 ENSG00000115875 no Homo_sapiens AGACGACGAC 10 SELEX C 10094314 SELEX RRM M331_0.6 0.025238 +SRSF7 ENSG00000115875 no Homo_sapiens AGACUACGAC 10 SELEX C 10094314 SELEX RRM M331_0.6 0.028208 +SRSF7 ENSG00000115875 no Homo_sapiens AGACGACGAU 10 SELEX C 10094314 SELEX RRM M331_0.6 0.070107 +SRSF7 ENSG00000115875 no Homo_sapiens AGACUACGAU 10 SELEX C 10094314 SELEX RRM M331_0.6 0.078354** +SRSF7 ENSG00000115875 no Homo_sapiens AGAGGAAGGCGA 12 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 588 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens CAGAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.003233 +SRSF7 ENSG00000115875 no Homo_sapiens CCGAGAUCA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.000697 +SRSF7 ENSG00000115875 no Homo_sapiens CCGAGAUCU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.000697 +SRSF7 ENSG00000115875 no Homo_sapiens CUCUUCAC 8 NMR spectroscopy S 17036044 SOLUTION NMR RRM 591 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens CUGAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.001625 +SRSF7 ENSG00000115875 no Homo_sapiens GAAGAAGAA 9 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 589 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens GACGACGAG 9 UV crosslink, immunoprecipitation. S 10523623 UV cross-linking RRM 583 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens GGACGACGA 9 SELEX winner confermed by immublotting in Hela nuclear extracts. S100 complementation. S 10022858 SELEX RRM s82 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens UAGAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.002427 +SRSF7 ENSG00000115875 no Homo_sapiens UCAACA 6 UV-cross link with HeLa nuclear extract S 8769651 UV cross-linking RRM 585 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens UCGAGAGAU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.011336 +SRSF7 ENSG00000115875 no Homo_sapiens UCGAUUGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.002164 +SRSF7 ENSG00000115875 no Homo_sapiens UCUCCG 6 SELEX winner confermed by immublotting in Hela nuclear extracts. S100 complementation. S 10022858 SELEX RRM s83 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens UCUUCA 6 S100 complementation S 10022858 other RRM 586 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens UCUUCA 6 UV-cross link with HeLa nuclear extract S 8769651 UV cross-linking RRM 584 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens UGGACAA 7 S100 complementation S 10022858 other RRM 587 1.000000** +SRSF9 ENSG00000111786 no Homo_sapiens AAGAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.013192 +SRSF9 ENSG00000111786 no Homo_sapiens ACCAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.003606 +SRSF9 ENSG00000111786 no Homo_sapiens AGAAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.015588 +SRSF9 ENSG00000111786 no Homo_sapiens AGCAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.046455 +SRSF9 ENSG00000111786 no Homo_sapiens AGCAG 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.026574 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAA 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.048723 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAC 5 EMSA using recombinant protein. UV cross-linking in HeLa and immunoprecipitation. S 18534987 EMSA;UV cross-linking;other RRM 1258 1.000000** +SRSF9 ENSG00000111786 no Homo_sapiens AGGAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.169924** +SRSF9 ENSG00000111786 no Homo_sapiens AGGAG 5 EMSA using recombinant protein. UV cross-linking in HeLa and immunoprecipitation. S 18534987 EMSA;UV cross-linking;other RRM 1256 1.000000** +SRSF9 ENSG00000111786 no Homo_sapiens AGGAG 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.097203 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAU 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.048723 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAC 5 SELEX C 17548433 SELEX RRM M333_0.6 0.204298** +SRSF9 ENSG00000111786 no Homo_sapiens AGGAU 5 SELEX C 17548433 SELEX RRM M333_0.6 0.036053 +SRSF9 ENSG00000111786 no Homo_sapiens AGGCA 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.003782 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAAAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.015196 +SRSF9 ENSG00000111786 no Homo_sapiens AUGAAAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.004506 +SRSF9 ENSG00000111786 no Homo_sapiens AGGACAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.016156 +SRSF9 ENSG00000111786 no Homo_sapiens AUGACAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.00479 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAGAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.038646 +SRSF9 ENSG00000111786 no Homo_sapiens AUGAGAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.011459 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAACA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.034905 +SRSF9 ENSG00000111786 no Homo_sapiens AUGAACA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.010349 +SRSF9 ENSG00000111786 no Homo_sapiens AGGACCA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.037111 +SRSF9 ENSG00000111786 no Homo_sapiens AUGACCA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.011003 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAGCA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.088771** +SRSF9 ENSG00000111786 no Homo_sapiens AUGAGCA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.02632 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAAAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.00429 +SRSF9 ENSG00000111786 no Homo_sapiens AUGAAAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.001272 +SRSF9 ENSG00000111786 no Homo_sapiens AGGACAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.004561 +SRSF9 ENSG00000111786 no Homo_sapiens AUGACAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.001352 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAGAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.010911 +SRSF9 ENSG00000111786 no Homo_sapiens AUGAGAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.003235 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAACG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.009854 +SRSF9 ENSG00000111786 no Homo_sapiens AUGAACG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.002922 +SRSF9 ENSG00000111786 no Homo_sapiens AGGACCG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.010477 +SRSF9 ENSG00000111786 no Homo_sapiens AUGACCG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.003106 +SRSF9 ENSG00000111786 no Homo_sapiens AGGAGCG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.025062 +SRSF9 ENSG00000111786 no Homo_sapiens AUGAGCG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.007431 +SRSF9 ENSG00000111786 no Homo_sapiens CGGAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.051096 +SRSF9 ENSG00000111786 no Homo_sapiens CGGAG 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.029229 +SRSF9 ENSG00000111786 no Homo_sapiens CGGUG 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.002269 +SRSF9 ENSG00000111786 no Homo_sapiens CUGGAUU 7 RNA affinity chromatography, mutation analysis and EMSA with HeLa nuclear extract. S 12024014 EMSA;RNA affinity chromatography/purification RRM 1257 1.000000** +SRSF9 ENSG00000111786 no Homo_sapiens GGAAGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.027063 +SRSF9 ENSG00000111786 no Homo_sapiens UGAAGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.00705 +SRSF9 ENSG00000111786 no Homo_sapiens GGGAGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.021057 +SRSF9 ENSG00000111786 no Homo_sapiens UGGAGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.005486 +SRSF9 ENSG00000111786 no Homo_sapiens GGAUGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.019984 +SRSF9 ENSG00000111786 no Homo_sapiens UGAUGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.005206 +SRSF9 ENSG00000111786 no Homo_sapiens GGGUGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.015549 +SRSF9 ENSG00000111786 no Homo_sapiens UGGUGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.004051 +SRSF9 ENSG00000111786 no Homo_sapiens GGAAGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.072808** +SRSF9 ENSG00000111786 no Homo_sapiens UGAAGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.018967 +SRSF9 ENSG00000111786 no Homo_sapiens GGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.05665 +SRSF9 ENSG00000111786 no Homo_sapiens UGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.014758 +SRSF9 ENSG00000111786 no Homo_sapiens GGAUGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.053764 +SRSF9 ENSG00000111786 no Homo_sapiens UGAUGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.014006 +SRSF9 ENSG00000111786 no Homo_sapiens GGGUGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.041833 +SRSF9 ENSG00000111786 no Homo_sapiens UGGUGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.010898 +SRSF9 ENSG00000111786 no Homo_sapiens GGAAGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.009106 +SRSF9 ENSG00000111786 no Homo_sapiens UGAAGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.002372 +SRSF9 ENSG00000111786 no Homo_sapiens GGGAGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.007086 +SRSF9 ENSG00000111786 no Homo_sapiens UGGAGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.001846 +SRSF9 ENSG00000111786 no Homo_sapiens GGAUGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.006724 +SRSF9 ENSG00000111786 no Homo_sapiens UGAUGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.001752 +SRSF9 ENSG00000111786 no Homo_sapiens GGGUGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.005232 +SRSF9 ENSG00000111786 no Homo_sapiens UGGUGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.001363 +SRSF9 ENSG00000111786 no Homo_sapiens GGAAGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.024499 +SRSF9 ENSG00000111786 no Homo_sapiens UGAAGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.006382 +SRSF9 ENSG00000111786 no Homo_sapiens GGGAGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.019062 +SRSF9 ENSG00000111786 no Homo_sapiens UGGAGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.004966 +SRSF9 ENSG00000111786 no Homo_sapiens GGAUGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.018091 +SRSF9 ENSG00000111786 no Homo_sapiens UGAUGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.004713 +SRSF9 ENSG00000111786 no Homo_sapiens GGGUGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.014076 +SRSF9 ENSG00000111786 no Homo_sapiens UGGUGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.003667 +SRSF9 ENSG00000111786 no Homo_sapiens UGGAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.034121 +SRSF9 ENSG00000111786 no Homo_sapiens UGGAU 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.009784 +SSB ENSG00000138385 no Homo_sapiens AUUU 4 X-RAY DIFFRACTION PDB 18547518 X-RAY DIFFRACTION LA;RRM 548 1.000000** +SSB ENSG00000138385 no Homo_sapiens UGCUG 5 X-RAY DIFFRACTION PDB 16387655 X-RAY DIFFRACTION LA;RM 457 1.000000** +SSB ENSG00000138385 no Homo_sapiens UGCUGUUUU 9 EMSA R 11342556 EMSA LA;RRM 58 1.000000** +SSB ENSG00000138385 no Homo_sapiens UUUU 4 X-RAY DIFFRACTION PDB 18547518 X-RAY DIFFRACTION LA;RRM 521 1.000000** +SU(S) FBGN0003575 no Drosophila_melanogaster UCAGUAGUCU 10 SELEX C 1714588 SELEX ZF_CCCH M279_0.6 0.019289** +SUP-12 WBGENE00006321 no Caenorhabditis_elegans GUGUG 5 SOLUTION NMR PDB 25183497 SOLUTION NMR RRM 397 1.000000** +SUP-12 WBGENE00006321 no Caenorhabditis_elegans GUGUGC 6 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 538 1.000000** +SUP-12 WBGENE00006321 no Caenorhabditis_elegans UGUGUGCCUG 10 protein affinity purification R 15545320 protein affinity purification RRM 39 1.000000** +SUP-12 WBGENE00006321 no Caenorhabditis_elegans AGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.130011 +SUP-12 WBGENE00006321 no Caenorhabditis_elegans UGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.277147** +SUP-12 WBGENE00006321 no Caenorhabditis_elegans AGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.04407 +SUP-12 WBGENE00006321 no Caenorhabditis_elegans UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.093946 +SUP-12 WBGENE00006321 no Caenorhabditis_elegans AGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.043672 +SUP-12 WBGENE00006321 no Caenorhabditis_elegans UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.093097 +SUPV3L1 ENSG00000156502 no Homo_sapiens CCGCCC 6 X-RAY DIFFRACTION PDB 22101826 X-RAY DIFFRACTION HELICASE_C;SUV3 330 1.000000** +SXL FBGN0264270 no Drosophila_melanogaster GCACG 5 X-RAY DIFFRACTION PDB 25209665 X-RAY DIFFRACTION RRM 446 1.000000** +SXL FBGN0264270 no Drosophila_melanogaster GUGA 4 X-RAY DIFFRACTION PDB 25209665 X-RAY DIFFRACTION RRM 475 1.000000** +SXL FBGN0264270 no Drosophila_melanogaster UGUUUUUUUU 10 X-RAY DIFFRACTION PDB 10217141 X-RAY DIFFRACTION RRM 398 1.000000** +SXL FBGN0264270 no Drosophila_melanogaster UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M114_0.6 0.324780** +SXL FBGN0264270 no Drosophila_melanogaster UUUUUUUGAGCA 12 X-RAY DIFFRACTION PDB 25209665 X-RAY DIFFRACTION RRM 372 1.000000** +SYNCRIP ENSG00000135316 no Homo_sapiens AAAAAAA 7 Competition assay using homopolymers with HeLa S10 extracts S 17074807 other RRM 1064 1.000000** +SYNCRIP ENSG00000135316 no Homo_sapiens AAAAAAA 7 Competition assay using homopolymers with purified protein S 15340051 other RRM 1062 1.000000** +SYNCRIP ENSG00000135316 no Homo_sapiens AAAAAAA 7 EMSA with RNA competitors using recombinant protein S 18045242 EMSA RRM 1066 1.000000** +SYNCRIP ENSG00000135316 no Homo_sapiens UUUUUUU 7 Competition assay using homopolymers with HeLa S10 extracts S 17074807 other RRM 1065 1.000000** +SYNCRIP ENSG00000135316 no Homo_sapiens UUUUUUU 7 Competition assay using homopolymers with purified protein S 15340051 other RRM 1063 1.000000** +SYNCRIP ENSMUSG00000032423 no Mus_musculus GGCUUUUUU 9 EMSA R 11773003 EMSA RRM 158 1.000000** +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.01276 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.029887 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUAA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.005531 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUAA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.012953 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.005297 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.012407 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.002296 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.005377 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.020047 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.046953 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUAU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.008689 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUAU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.02035 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.008322 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.019491 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.003607 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.008448 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.046405 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.108687** +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUAG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.020113 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUAG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.047106 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAUG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.019264 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAUG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.045119 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.008349 +SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.019555 +SYP FBGN0038826 no Drosophila_melanogaster CAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.042322 +SYP FBGN0038826 no Drosophila_melanogaster UAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.038447 +SYP FBGN0038826 no Drosophila_melanogaster GAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.089957 +SYP FBGN0038826 no Drosophila_melanogaster CAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.090386 +SYP FBGN0038826 no Drosophila_melanogaster UAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.08211 +SYP FBGN0038826 no Drosophila_melanogaster GAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.192120** +SYP FBGN0038826 no Drosophila_melanogaster CAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.046889 +SYP FBGN0038826 no Drosophila_melanogaster UAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.042596 +SYP FBGN0038826 no Drosophila_melanogaster GAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.099666 +TARDBP ENSG00000120948 no Homo_sapiens GAAUGA 6 RNAcompete C 23846655 RNAcompete RRM M074_0.6 0.498721** +TARDBP ENSG00000120948 no Homo_sapiens GAAUGU 6 RNAcompete C 23846655 RNAcompete RRM M074_0.6 0.121889 +TARDBP ENSG00000120948 no Homo_sapiens GAAUGG 6 RNAcompete C 23846655 RNAcompete RRM M074_0.6 0.116208 +TARDBP ENSG00000120948 no Homo_sapiens GUGAAUGA 8 SOLUTION NMR PDB 24240615 SOLUTION NMR RRM 541 1.000000** +TARDBP ENSG00000120948 no Homo_sapiens GUUGUGC 7 Immunoprecipitation in HEK293 cells. S 19815002 other RRM 1278 1.000000** +TARDBP ENSG00000120948 no Homo_sapiens UGUGUG 6 UV crosslink, SDS-PAGE, EMSA with recombinant protein. S 11470789 UV cross-linking;EMSA RRM 1279 1.000000** +TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUG 8 UV crosslinking, EMSA. S 15826655 UV cross-linking;EMSA RRM 1281 1.000000** +TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUG 10 UV crosslinking, EMSA. S 15826655 UV cross-linking;EMSA RRM 1282 1.000000** +TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUGUG 12 UV cross-linking R 11470789 UV cross-linking RRM 178 1.000000** +TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUGUG 12 UV crosslink, SDS-PAGE, EMSA with recombinant protein. S 11470789 UV cross-linking;EMSA RRM 1280 1.000000** +TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUGUG 12 UV crosslinking, EMSA. S 15826655 UV cross-linking;EMSA RRM 1283 1.000000** +TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUGUG 12 filter binding assay R 19174564 other RRM 144 1.000000** +TARDBP ENSG00000120948 yes Homo_sapiens GUUGUUC 7 Immunoprecipitation in HEK293 cells. S 19815002 other RRM 1277 1.000000** +TARDBP ENSG00000120948 yes Homo_sapiens GUUUUGC 7 Immunoprecipitation in HEK293 cells. S 19815002 other RRM 1276 1.000000** +TB11.55.0009 TB11.55.0009 no Trypanosoma_brucei ACCUG 5 X-RAY DIFFRACTION PDB 16923390 X-RAY DIFFRACTION SSDNA 364 1.000000** +TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei AUUCACA 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.199289** +TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei UUUCACA 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.08041 +TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei CUUCACA 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.075238 +TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei AUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.119419 +TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei UUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.048184 +TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei CUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.045085 +TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUAGUA 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.150096 +TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUUGUA 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.163068** +TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.138707 +TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.150695 +TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUAGUG 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.136159 +TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUUGUG 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.147926 +TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUGUUGC 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.020862 +TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUUUUGC 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.016977 +TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUGUUUC 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.007828 +TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.00637 +TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUGUUGU 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.076363** +TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.062144 +TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUGUUUU 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.028653 +TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.023318 +TBG972.8.6820 TBG972.8.6820 no Trypanosoma_brucei UAUACU 6 RNAcompete C 23846655 RNAcompete RRM M192_0.6 0.586555** +TBG972.9.4840 TBG972.9.4840 no Trypanosoma_brucei CUUUCU 6 RNAcompete C 23846655 RNAcompete RRM M193_0.6 0.564410** +TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.115172 +TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AGAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.170600** +TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AAAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.032087 +TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AGAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.04753 +TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AAAAACA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.047631 +TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AGAAACA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.070553 +TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AAAAAGA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.050428 +TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AGAAAGA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.074697 +TERT DQ248968 no Oryzias_latipes CGAA 4 X-RAY DIFFRACTION PDB 24793650 X-RAY DIFFRACTION RVT_1;TELOMERASE_RBD 557 1.000000** +TERT DQ248968 no Oryzias_latipes GCGAA 5 X-RAY DIFFRACTION PDB 24793650 X-RAY DIFFRACTION RVT_1;TELOMERASE_RBD 551 1.000000** +TERT DQ248968 no Oryzias_latipes GCGGU 5 X-RAY DIFFRACTION PDB 24793650 X-RAY DIFFRACTION RVT_1;TELOMERASE_RBD 559 1.000000** +THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana AACACGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.186065** +THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana UACACGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.057086 +THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana CACACGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.056939 +THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana AACGCGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.083353 +THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana UACGCGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.025573 +THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana CACGCGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.025507 +TIA1 ENSG00000116001 no Homo_sapiens AUUC 4 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s68 0.495098** +TIA1 ENSG00000116001 no Homo_sapiens AUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.093595 +TIA1 ENSG00000116001 no Homo_sapiens AUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.093595 +TIA1 ENSG00000116001 no Homo_sapiens AUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.093595 +TIA1 ENSG00000116001 no Homo_sapiens AUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.093595 +TIA1 ENSG00000116001 no Homo_sapiens CUUC 4 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s68 0.495098** +TIA1 ENSG00000116001 no Homo_sapiens CUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.140159** +TIA1 ENSG00000116001 no Homo_sapiens CUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.140159** +TIA1 ENSG00000116001 no Homo_sapiens CUUUG 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.093595 +TIA1 ENSG00000116001 no Homo_sapiens CUUUUA 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.093595 +TIA1 ENSG00000116001 no Homo_sapiens CUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.140159** +TIA1 ENSG00000116001 no Homo_sapiens CUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.140159** +TIA1 ENSG00000116001 no Homo_sapiens CUUUUUA 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s11 0.124381 +TIA1 ENSG00000116001 no Homo_sapiens CUUUUUC 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s11 0.247531** +TIA1 ENSG00000116001 no Homo_sapiens GUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.140159** +TIA1 ENSG00000116001 no Homo_sapiens GUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.140159** +TIA1 ENSG00000116001 no Homo_sapiens GUUUG 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.093595 +TIA1 ENSG00000116001 no Homo_sapiens GUUUUA 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.093595 +TIA1 ENSG00000116001 no Homo_sapiens GUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.140159** +TIA1 ENSG00000116001 no Homo_sapiens GUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.140159** +TIA1 ENSG00000116001 no Homo_sapiens GUUUUUC 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s11 0.247531** +TIA1 ENSG00000116001 no Homo_sapiens GUUUUUG 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s11 0.124381 +TIA1 ENSG00000116001 no Homo_sapiens GUUUUUUUUC 10 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s67 1.000000** +TIA1 ENSG00000116001 no Homo_sapiens UUCUCCUUUC 10 NMR, isothermal titration calorimetry and SAXS. S 24682828 SOLUTION NMR RRM 1285 1.000000** +TIA1 ENSG00000116001 no Homo_sapiens UUUUUCG 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.085039 +TIA1 ENSG00000116001 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.235839** +TIA1 ENSG00000116001 no Homo_sapiens UUUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.084194 +TIA1 ENSG00000116001 no Homo_sapiens UUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.039773 +TIA1 ENSG00000116001 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.110301 +TIA1 ENSG00000116001 no Homo_sapiens UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.039377 +TIA1 ENSG00000116001 no Homo_sapiens UUUUUUAUUUU 11 UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts. S 17035636 UV cross-linking;EMSA;other RRM 1284 1.000000** +TIA1 ENSG00000116001 no Homo_sapiens UUUUUUUUU 9 NMR, isothermal titration calorimetry and SAXS. S 24682828 SOLUTION NMR RRM 1286 1.000000** +TIA1 ENSG00000116001 no Homo_sapiens AUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.078904 +TIA1 ENSG00000116001 no Homo_sapiens UUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.225711** +TIA1 ENSG00000116001 no Homo_sapiens AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.043889 +TIA1 ENSG00000116001 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.125549 +TIA1 ENSG00000116001 no Homo_sapiens AUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.030799 +TIA1 ENSG00000116001 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.088104 +TIAL1 ENSG00000151923 no Homo_sapiens AUUA 4 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s63 0.495098** +TIAL1 ENSG00000151923 no Homo_sapiens AUUC 4 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s63 0.495098** +TIAL1 ENSG00000151923 no Homo_sapiens AUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.081517 +TIAL1 ENSG00000151923 no Homo_sapiens AUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.122072 +TIAL1 ENSG00000151923 no Homo_sapiens AUUUUA 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.122072 +TIAL1 ENSG00000151923 no Homo_sapiens AUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.182805** +TIAL1 ENSG00000151923 no Homo_sapiens AUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.122072 +TIAL1 ENSG00000151923 no Homo_sapiens AUUUUUA 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.055647 +TIAL1 ENSG00000151923 no Homo_sapiens AUUUUUUUC 9 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s65 0.495098** +TIAL1 ENSG00000151923 no Homo_sapiens CUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.122072 +TIAL1 ENSG00000151923 no Homo_sapiens CUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.182805** +TIAL1 ENSG00000151923 no Homo_sapiens CUUUG 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.122072 +TIAL1 ENSG00000151923 no Homo_sapiens CUUUUA 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.122072 +TIAL1 ENSG00000151923 no Homo_sapiens CUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.182805** +TIAL1 ENSG00000151923 no Homo_sapiens CUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.122072 +TIAL1 ENSG00000151923 no Homo_sapiens CUUUUUA 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.165840** +TIAL1 ENSG00000151923 no Homo_sapiens CUUUUUC 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.165840** +TIAL1 ENSG00000151923 no Homo_sapiens CUUUUUG 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.165840** +TIAL1 ENSG00000151923 no Homo_sapiens CUUUUUUC 8 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s64 1.000000** +TIAL1 ENSG00000151923 no Homo_sapiens GUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.122072 +TIAL1 ENSG00000151923 no Homo_sapiens GUUUG 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.081517 +TIAL1 ENSG00000151923 no Homo_sapiens GUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.06134 +TIAL1 ENSG00000151923 no Homo_sapiens GUUUUUC 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.110743 +TIAL1 ENSG00000151923 no Homo_sapiens GUUUUUG 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.110743 +TIAL1 ENSG00000151923 no Homo_sapiens GUUUUUUUC 9 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s65 0.495098** +TIAL1 ENSG00000151923 no Homo_sapiens GUUUUUUUUG 10 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s66 1.000000** +TIAL1 ENSG00000151923 no Homo_sapiens UUUUAAAUUUU 11 UV cross-linking and immunoprecipitation with HeLa cytoplasmic extracts S 12356730 UV cross-linking RRM 1289 1.000000** +TIAL1 ENSG00000151923 no Homo_sapiens UUUUCAGUUUU 11 UV cross-linking and immunoprecipitation with HeLa cytoplasmic extracts S 12356730 UV cross-linking RRM 1288 1.000000** +TIAL1 ENSG00000151923 no Homo_sapiens UUUUUUAUUUU 11 UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts. S 17035636 UV cross-linking;EMSA;other RRM 1287 1.000000** +TIAR-1 WBGENE00015943 no Caenorhabditis_elegans UUUUUU 6 RNAcompete C 23846655 RNAcompete RRM M219_0.6 0.657541** +TIAR-3 WBGENE00007396 no Caenorhabditis_elegans AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M005_0.6 0.110043 +TIAR-3 WBGENE00007396 no Caenorhabditis_elegans UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M005_0.6 0.130789 +TIAR-3 WBGENE00007396 no Caenorhabditis_elegans CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M005_0.6 0.279857** +TLR3 ENSMUSG00000031639 no Mus_musculus AAAGG 5 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 568 1.000000** +TLR3 ENSMUSG00000031639 no Mus_musculus AGAAU 5 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 479 1.000000** +TLR3 ENSMUSG00000031639 no Mus_musculus CUGC 4 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 329 1.000000** +TLR3 ENSMUSG00000031639 no Mus_musculus GCGC 4 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 358 1.000000** +TLR3 ENSMUSG00000031639 no Mus_musculus UUCCU 5 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 468 1.000000** +TRA2 FBGN0003742 no Drosophila_melanogaster CAAAA 5 SELEX R 11557340 SELEX RRM 95 1.000000** +TRA2 FBGN0003742 no Drosophila_melanogaster AAAGAA 6 RNAcompete C 23846655 RNAcompete RRM M076_0.6 0.088871 +TRA2 FBGN0003742 no Drosophila_melanogaster CAAGAA 6 RNAcompete C 23846655 RNAcompete RRM M076_0.6 0.086993 +TRA2 FBGN0003742 no Drosophila_melanogaster GAAGAA 6 RNAcompete C 23846655 RNAcompete RRM M076_0.6 0.309391** +TRA2A ENSG00000164548 no Homo_sapiens AAGAA 5 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s78 1.000000** +TRA2A ENSG00000164548 no Homo_sapiens AAGAAGAA 8 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s76 1.000000** +TRA2A ENSG00000164548 no Homo_sapiens AAGAAGAAGAA 11 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s77 1.000000** +TRA2A ENSG00000164548 no Homo_sapiens GAAGAGGAAG 10 EMSA, UV-crosslink, immunoprecipitation, mutation assay S 12403832 UV cross-linking;EMSA RRM 1075 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AAGAA 5 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s78 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AAGAAC 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 1086 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AAGAAG 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 1087 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AAGAAG 6 Positive clones identified by fluorescence-activated cell sorting and visual inspection. Confirmed by UV crosslink, immunoprecipitation, SDS-PAGE. S 16943417 other RRM 1078 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AAGAAGAA 8 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s76 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AAGAAGAAGAA 11 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s77 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AAUAAGAAG 9 UV crosslink, Western blot, immunoprecipitation, RNA interference with HeLa and HEK293 nuclear extracts. S 12649279 UV cross-linking;other RRM 1077 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AGAA 4 SOLUTION NMR PDB 20926394 SOLUTION NMR RRM 368 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AGAAC 5 SOLUTION NMR PDB 21399644 SOLUTION NMR RRM 530 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AGAAGGAAGG 10 UV crosslink, competition assay in HeLa S100 and nuclear extracts. Immunoblotting in C33a extracts. S 10931943 UV cross-linking;other RRM 1079 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens GAAAGAAG 8 Pull down assay from HEK293 nuclear extract, western blot. S 14709600 other RRM 1083 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens GAAAGAAU 8 Pull down assay from HEK293 nuclear extract, western blot. S 14709600 other RRM 1082 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens GAAGAA 6 NMR spectroscopy S 20926394 SOLUTION NMR RRM 1084 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens GAAGAAGGAAA 11 Pull down assay from HEK293 nuclear extract, western blot. S 14709600 other RRM 1081 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens GAAGGA 6 In vivo splicing with deletion and mutation analysis S 24632473 other RRM 1090 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens UCAAC 5 NMR spectroscopy S 20926394 SOLUTION NMR RRM 1085 1.000000** +TRA2B ENSG00000136527 yes Homo_sapiens AAGAAGAAG 9 UV crosslink, Western blot, immunoprecipitation, RNA interference with HeLa and HEK293 nuclear extracts. S 12649279 UV cross-linking;other RRM 1076 1.000000** +TRA2B ENSG00000136527 yes Homo_sapiens GAAUUA 6 In vivo splicing with deletion and mutation analysis S 24632473 other RRM 1091 1.000000** +TUT1 ENSG00000149016 no Homo_sapiens AAAUACU 7 RNAcompete C 23846655 RNAcompete RRM M073_0.6 0.016602 +TUT1 ENSG00000149016 no Homo_sapiens CAAUACU 7 RNAcompete C 23846655 RNAcompete RRM M073_0.6 0.047935 +TUT1 ENSG00000149016 no Homo_sapiens AGAUACU 7 RNAcompete C 23846655 RNAcompete RRM M073_0.6 0.043804 +TUT1 ENSG00000149016 no Homo_sapiens CGAUACU 7 RNAcompete C 23846655 RNAcompete RRM M073_0.6 0.126477** +TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.074519 +TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AUAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.063691 +TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AGAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.198764** +TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.050051 +TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AUAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.042778 +TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AGAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.133501 +TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UGUUUGA 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.072098 +TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UUUUUGA 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.034419 +TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UGUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.159480** +TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.076134 +TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UGUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.044692 +TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UUUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.021336 +TVAG_267990 TVAG_267990 no Trichomonas_vaginalis ACCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.222505** +TVAG_267990 TVAG_267990 no Trichomonas_vaginalis AUCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.095723 +TVAG_267990 TVAG_267990 no Trichomonas_vaginalis ACCAUGU 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.1532 +TVAG_267990 TVAG_267990 no Trichomonas_vaginalis AUCAUGU 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.065907 +TVAG_267990 TVAG_267990 no Trichomonas_vaginalis ACCAUGG 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.158635 +TVAG_267990 TVAG_267990 no Trichomonas_vaginalis AUCAUGG 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.068246 +TVAG_302220 TVAG_302220 no Trichomonas_vaginalis CAAUAA 6 RNAcompete C 23846655 RNAcompete RRM M197_0.6 0.754518** +TVAG_514790 TVAG_514790 no Trichomonas_vaginalis CUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M204_0.6 0.025978 +TVAG_514790 TVAG_514790 no Trichomonas_vaginalis UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M204_0.6 0.071027 +TVAG_514790 TVAG_514790 no Trichomonas_vaginalis CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M204_0.6 0.097576 +TVAG_514790 TVAG_514790 no Trichomonas_vaginalis UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M204_0.6 0.266788** +U2AF2 ENSG00000063244 no Homo_sapiens UUUUU 5 X-RAY DIFFRACTION PDB 16818232 X-RAY DIFFRACTION RRM 461 1.000000** +U2AF2 ENSG00000063244 no Homo_sapiens UUUUUUU 7 SOLUTION NMR PDB 21753750 SOLUTION NMR RRM 465 1.000000** +U2AF2 ENSG00000063244 no Homo_sapiens UUUUUCC 7 RNAcompete C 23846655 RNAcompete RRM M077_0.6 0.142738 +U2AF2 ENSG00000063244 no Homo_sapiens UUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M077_0.6 0.287699** +U2AF50 FBGN0005411 no Drosophila_melanogaster UUUUUCC 7 RNAcompete C 23846655 RNAcompete RRM M078_0.6 0.08035 +U2AF50 FBGN0005411 no Drosophila_melanogaster UUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M078_0.6 0.200274** +U2AF50 FBGN0005411 no Drosophila_melanogaster UUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M078_0.6 0.04654 +U2AF50 FBGN0005411 no Drosophila_melanogaster UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M078_0.6 0.116003 +UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCAAA 8 UV cross-linking R 10617207 UV cross-linking RRM 92 1.000000** +UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCAGG 8 UV cross-linking R 10617207 UV cross-linking RRM 90 1.000000** +UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCGAA 8 UV cross-linking R 10617207 UV cross-linking RRM 80 1.000000** +UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCGAG 8 UV cross-linking R 10617207 UV cross-linking RRM 111 1.000000** +UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCGGG 8 UV cross-linking R 10617207 UV cross-linking RRM 26 1.000000** +UAF-2 WBGENE00006698 no Caenorhabditis_elegans UUUUCAGG 8 UV cross-linking R 10617207 UV cross-linking ZF_CCCH 176 1.000000** +UNC-75 WBGENE00006807 no Caenorhabditis_elegans UGUUGUA 7 RNAcompete C 23846655 RNAcompete RRM M079_0.6 0.062749 +UNC-75 WBGENE00006807 no Caenorhabditis_elegans UGUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M079_0.6 0.059244 +UNC-75 WBGENE00006807 no Caenorhabditis_elegans UGUUGUG 7 RNAcompete C 23846655 RNAcompete RRM M079_0.6 0.229250** +VAS FBGN0262526 no Drosophila_melanogaster UUUUUU 6 X-RAY DIFFRACTION PDB 16630817 X-RAY DIFFRACTION DEAD;HELICASE_C 438 1.000000** +VTS1 YOR359W no Saccharomyces_cerevisiae CUGGCA 6 SOLUTION NMR PDB 16429156 SOLUTION NMR SAM 524 1.000000** +VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGCC 7 RNAcompete C 23846655 RNAcompete SAM M107_0.6 0.310866** +VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGCG 7 RNAcompete C 23846655 RNAcompete SAM M107_0.6 0.101128 +VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGCC 7 RNAcompete C 23846655 RNAcompete SAM M080_0.6 0.316298** +VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGUC 7 RNAcompete C 23846655 RNAcompete SAM M080_0.6 0.079193 +VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGCG 7 RNAcompete C 23846655 RNAcompete SAM M080_0.6 0.099823 +VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGUG 7 RNAcompete C 23846655 RNAcompete SAM M080_0.6 0.024993 +VTS1 YOR359W no Saccharomyces_cerevisiae UCUUUGA 7 X-RAY DIFFRACTION PDB 16429151 X-RAY DIFFRACTION SAM 441 1.000000** +XPO5 ENSG00000124571 no Homo_sapiens CCGC 4 X-RAY DIFFRACTION PDB 19965479 X-RAY DIFFRACTION XPO1 469 1.000000** +XPO5 ENSG00000124571 no Homo_sapiens GUUU 4 X-RAY DIFFRACTION PDB 19965479 X-RAY DIFFRACTION XPO1 578 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens AACAUC 6 RNAcompete C 23846655 RNAcompete CSD M081_0.6 0.649623** +YBX1 ENSG00000065978 no Homo_sapiens AACAUCA 7 RNAcompete C 23846655 RNAcompete CSD M111_0.6 0.295457** +YBX1 ENSG00000065978 no Homo_sapiens AACAUCU 7 RNAcompete C 23846655 RNAcompete CSD M111_0.6 0.089415 +YBX1 ENSG00000065978 no Homo_sapiens AACAUCG 7 RNAcompete C 23846655 RNAcompete CSD M111_0.6 0.124748 +YBX1 ENSG00000065978 no Homo_sapiens ACAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA CSD 1293 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens CAACCACAA 9 UV crosslink and competition assay in HeLa nuclear extracts. S 11447123 UV cross-linking CSD 1291 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens CAACCACACCAC 12 UV crosslink and competition assay in HeLa nuclear extracts. S 11447123 UV cross-linking CSD 1290 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens CACC 4 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. S 22730292 SELEX CSD s54 0.495098** +YBX1 ENSG00000065978 no Homo_sapiens CAUC 4 In vivo splicing in HEK-293 cells with wt and mutated sequences, EMSA S 22730292 UV cross-linking;other CSD 1298 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens CAUC 4 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. S 22730292 SELEX CSD s54 0.495098** +YBX1 ENSG00000065978 no Homo_sapiens CAUCAUC 7 In vivo splicing in HEK-293 cells with wt and mutated sequences, UV crosslinking S 22730292 UV cross-linking;other CSD 1299 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens CAUCGC 6 EMSA with recombinant protein. S 22730292 UV cross-linking;other CSD 1296 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens CAUCUG 6 EMSA with recombinant protein. S 22730292 UV cross-linking;other CSD 1295 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens CCCUGCG 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.001029 +YBX1 ENSG00000065978 no Homo_sapiens CCUGCGG 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.000687 +YBX1 ENSG00000065978 no Homo_sapiens CUGCGGU 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.000231 +YBX1 ENSG00000065978 no Homo_sapiens GAUC 4 EMSA with recombinant protein. S 22730292 UV cross-linking;other CSD 1294 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens GAUCUG 6 EMSA with recombinant protein. S 22730292 UV cross-linking;other CSD 1297 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens GCCUGCG 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.001285** +YBX1 ENSG00000065978 no Homo_sapiens GGUCUGC 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.000144 +YBX1 ENSG00000065978 no Homo_sapiens UCCAGCAA 8 RNA footprinting R 15798215 other CSD 124 1.000000** +YBX1 ENSG00000065978 yes Homo_sapiens AGAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA CSD 1292 1.000000** +YBX2 ENSG00000006047 no Homo_sapiens AACAACA 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.111962** +YBX2 ENSG00000006047 no Homo_sapiens AACAUCA 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.088475 +YBX2 ENSG00000006047 no Homo_sapiens AACAACU 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.100059 +YBX2 ENSG00000006047 no Homo_sapiens AACAUCU 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.079069 +YBX2 ENSG00000006047 no Homo_sapiens AACAACG 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.092417 +YBX2 ENSG00000006047 no Homo_sapiens AACAUCG 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.07303 +YBX2 ENSMUSG00000018554 no Mus_musculus AACACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UACACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CACACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus ACCACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UCCACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CCCACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus AACAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UACAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CACAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus ACCAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UCCAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CCCAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus AACACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UACACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CACACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus ACCACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UCCACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CCCACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus AACAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UACAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CACAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus ACCAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UCCAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CCCAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus AACACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UACACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CACACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus ACCACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UCCACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CCCACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus AACAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UACAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CACAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus ACCAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus UCCAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2 ENSMUSG00000018554 no Mus_musculus CCCAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** +YBX2-A XB-GENE-6252609 no Xenopus_laevis GAACAUCU 8 SELEX C 7499328 SELEX CSD M254_0.6 0.027732** +YBX2-A XB-GENE-6252609 no Xenopus_laevis UAACAUCU 8 SELEX C 7499328 SELEX CSD M254_0.6 0.027732** +YBX2-A XB-GENE-6252609 no Xenopus_laevis GAACAUCU 8 SELEX R 7499328 SELEX CSD 115_7499328.pfm 0.027732** +YBX2-A XB-GENE-6252609 no Xenopus_laevis UAACAUCU 8 SELEX R 7499328 SELEX CSD 115_7499328.pfm 0.027732** +YBX2-A XB-GENE-6252609 no Xenopus_laevis UAACAUC 7 SELEX R 7499328 SELEX CSD 114_7499328.pfm 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus AACACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UACACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CACACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus ACCACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UCCACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CCCACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus AACAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UACAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CACAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus ACCAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UCCAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CCCAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus AACACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UACACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CACACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus ACCACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UCCACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CCCACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus AACAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UACAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CACAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus ACCAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UCCAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CCCAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus AACACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UACACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CACACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus ACCACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UCCACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CCCACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus AACAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UACAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CACAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus ACCAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus UCCAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YBX3 ENSMUSG00000030189 no Mus_musculus CCCAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** +YTHDC1 ENSG00000083896 no Homo_sapiens GCAUGC 6 EMSA R 20167602 EMSA YTH 50 1.000000** +YTHDC1 ENSG00000083896 no Homo_sapiens GAAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.027112** +YTHDC1 ENSG00000083896 no Homo_sapiens UAAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.022811 +YTHDC1 ENSG00000083896 no Homo_sapiens GCAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.020733 +YTHDC1 ENSG00000083896 no Homo_sapiens UCAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.017444 +YTHDC1 ENSG00000083896 no Homo_sapiens GGAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.007974 +YTHDC1 ENSG00000083896 no Homo_sapiens UGAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.006709 +YTHDC1 ENSG00000083896 no Homo_sapiens GACUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.012652 +YTHDC1 ENSG00000083896 no Homo_sapiens UACUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.010645 +YTHDC1 ENSG00000083896 no Homo_sapiens GCCUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.009675 +YTHDC1 ENSG00000083896 no Homo_sapiens UCCUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.00814 +YTHDC1 ENSG00000083896 no Homo_sapiens GGCUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.003721 +YTHDC1 ENSG00000083896 no Homo_sapiens UGCUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.003131 +YTHDC1 ENSG00000083896 no Homo_sapiens GAGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.018075 +YTHDC1 ENSG00000083896 no Homo_sapiens UAGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.015207 +YTHDC1 ENSG00000083896 no Homo_sapiens GCGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.013822 +YTHDC1 ENSG00000083896 no Homo_sapiens UCGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.011629 +YTHDC1 ENSG00000083896 no Homo_sapiens GGGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.005316 +YTHDC1 ENSG00000083896 no Homo_sapiens UGGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.004473 +YTHDC1 ENSG00000083896 no Homo_sapiens GAAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.027112** +YTHDC1 ENSG00000083896 no Homo_sapiens UAAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.022811 +YTHDC1 ENSG00000083896 no Homo_sapiens GCAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.020733 +YTHDC1 ENSG00000083896 no Homo_sapiens UCAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.017444 +YTHDC1 ENSG00000083896 no Homo_sapiens GGAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.007974 +YTHDC1 ENSG00000083896 no Homo_sapiens UGAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.006709 +YTHDC1 ENSG00000083896 no Homo_sapiens GACUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.012652 +YTHDC1 ENSG00000083896 no Homo_sapiens UACUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.010645 +YTHDC1 ENSG00000083896 no Homo_sapiens GCCUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.009675 +YTHDC1 ENSG00000083896 no Homo_sapiens UCCUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.00814 +YTHDC1 ENSG00000083896 no Homo_sapiens GGCUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.003721 +YTHDC1 ENSG00000083896 no Homo_sapiens UGCUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.003131 +YTHDC1 ENSG00000083896 no Homo_sapiens GAGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.018075 +YTHDC1 ENSG00000083896 no Homo_sapiens UAGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.015207 +YTHDC1 ENSG00000083896 no Homo_sapiens GCGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.013822 +YTHDC1 ENSG00000083896 no Homo_sapiens UCGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.011629 +YTHDC1 ENSG00000083896 no Homo_sapiens GGGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.005316 +YTHDC1 ENSG00000083896 no Homo_sapiens UGGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.004473 +ZC3H10 ENSG00000135482 no Homo_sapiens CCAGCGA 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.025332 +ZC3H10 ENSG00000135482 no Homo_sapiens GCAGCGA 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.048918 +ZC3H10 ENSG00000135482 no Homo_sapiens CGAGCGA 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.010524 +ZC3H10 ENSG00000135482 no Homo_sapiens GGAGCGA 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.020322 +ZC3H10 ENSG00000135482 no Homo_sapiens CCAGCGC 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.065913 +ZC3H10 ENSG00000135482 no Homo_sapiens GCAGCGC 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.127284** +ZC3H10 ENSG00000135482 no Homo_sapiens CGAGCGC 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.027382 +ZC3H10 ENSG00000135482 no Homo_sapiens GGAGCGC 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.052878 +ZCRB1 ENSG00000139168 no Homo_sapiens GAAUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.197321** +ZCRB1 ENSG00000139168 no Homo_sapiens GGAUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.066343 +ZCRB1 ENSG00000139168 no Homo_sapiens GAUUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.078808 +ZCRB1 ENSG00000139168 no Homo_sapiens GGUUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.026497 +ZCRB1 ENSG00000139168 no Homo_sapiens GACUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.120915 +ZCRB1 ENSG00000139168 no Homo_sapiens GGCUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.040654 +ZFP36 ENSG00000128016 no Homo_sapiens AAAAAACAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.04524 +ZFP36 ENSG00000128016 no Homo_sapiens AAUAAACAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.04524 +ZFP36 ENSG00000128016 no Homo_sapiens AACAAACAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0232 +ZFP36 ENSG00000128016 no Homo_sapiens AAAAAGCAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0312 +ZFP36 ENSG00000128016 no Homo_sapiens AAUAAGCAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0312 +ZFP36 ENSG00000128016 no Homo_sapiens AACAAGCAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.016 +ZFP36 ENSG00000128016 no Homo_sapiens AAAAAAUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.088218** +ZFP36 ENSG00000128016 no Homo_sapiens AAUAAAUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.088218** +ZFP36 ENSG00000128016 no Homo_sapiens AACAAAUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.04524 +ZFP36 ENSG00000128016 no Homo_sapiens AAAAAGUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.06084 +ZFP36 ENSG00000128016 no Homo_sapiens AAUAAGUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.06084 +ZFP36 ENSG00000128016 no Homo_sapiens AACAAGUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0312 +ZFP36 ENSG00000128016 no Homo_sapiens AAAAAAGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.088218** +ZFP36 ENSG00000128016 no Homo_sapiens AAUAAAGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.088218** +ZFP36 ENSG00000128016 no Homo_sapiens AACAAAGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.04524 +ZFP36 ENSG00000128016 no Homo_sapiens AAAAAGGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.06084 +ZFP36 ENSG00000128016 no Homo_sapiens AAUAAGGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.06084 +ZFP36 ENSG00000128016 no Homo_sapiens AACAAGGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0312 +ZFP36 ENSG00000128016 no Homo_sapiens AAUAA 5 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 128 1.000000** +ZFP36 ENSG00000128016 no Homo_sapiens AUUUA 5 RIP-chip C 18256032 genome-wide in vivo immunoprecipitation ZF_CCCH 38 1.000000** +ZFP36 ENSG00000128016 no Homo_sapiens CUUGU 5 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 138 1.000000** +ZFP36 ENSG00000128016 no Homo_sapiens ACCUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCCUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCCUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACUUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCUUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCUUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACCUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCCUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCCUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACUUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCUUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCUUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACCUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCCUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCCUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACUUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCUUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCUUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACCUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCCUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCCUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACUUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCUUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCUUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACCUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCCUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCCUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACUUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCUUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCUUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACCUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCCUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCCUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens ACUUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UCUUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens CCUUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** +ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAUU 9 RIP-chip C 18256032 genome-wide in vivo immunoprecipitation ZF_CCCH 109 1.000000** +ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAAA 9 SELEX C 12324455 SELEX ZF_CCCH M350_0.6 0.011906 +ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAUA 9 SELEX C 12324455 SELEX ZF_CCCH M350_0.6 0.019209 +ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAAU 9 SELEX C 12324455 SELEX ZF_CCCH M350_0.6 0.107158 +ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAUU 9 SELEX C 12324455 SELEX ZF_CCCH M350_0.6 0.172881** +ZFP36 ENSG00000128016 no Homo_sapiens UUGUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 49 0.495098** +ZFP36 ENSG00000128016 no Homo_sapiens UUGUGG 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 49 0.495098** +ZFP36L2 ENSG00000152518 no Homo_sapiens UUAUUUAUU 9 NMR R 14981510 NMR ZF_CCCH 15 1.000000** +ZFP36L2 ENSG00000152518 no Homo_sapiens UUAUUUAUU 9 SOLUTION NMR PDB 14981510 SOLUTION NMR ZF_CCCH 428 1.000000** +ZNF346 ENSG00000113761 no Homo_sapiens CCACC 5 SOLUTION NMR PDB 24521053 SOLUTION NMR ZF_C2H2 388 1.000000** +ZNF346 ENSG00000113761 no Homo_sapiens GUGGU 5 SOLUTION NMR PDB 24521053 SOLUTION NMR ZF_C2H2 481 1.000000** +ZNF638 ENSG00000075292 no Homo_sapiens CGUUCGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.032334 +ZNF638 ENSG00000075292 no Homo_sapiens UGUUCGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.098877** +ZNF638 ENSG00000075292 no Homo_sapiens GGUUCGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.031981 +ZNF638 ENSG00000075292 no Homo_sapiens CGUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.021895 +ZNF638 ENSG00000075292 no Homo_sapiens UGUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.066954 +ZNF638 ENSG00000075292 no Homo_sapiens GGUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.021656 +ZNF638 ENSG00000075292 no Homo_sapiens CGUUCUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.014968 +ZNF638 ENSG00000075292 no Homo_sapiens UGUUCUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.04577 +ZNF638 ENSG00000075292 no Homo_sapiens GGUUCUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.014804 +ZNF638 ENSG00000075292 no Homo_sapiens CGUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.010135 +ZNF638 ENSG00000075292 no Homo_sapiens UGUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.030993 +ZNF638 ENSG00000075292 no Homo_sapiens GGUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.010024 +ZRANB2 ENSG00000132485 no Homo_sapiens AGGGAA 6 Fluorescence anisotropy. S 19304800 other ZF_RANBP 1300 1.000000** +ZRANB2 ENSG00000132485 no Homo_sapiens AGGUAA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. EMSA, NMR Spectroscopy. Fluorescence anisotropy. S 19304800 SELEX ZF_RANBP s21 0.134437** +ZRANB2 ENSG00000132485 no Homo_sapiens AGGUAC 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. Fluorescence anisotropy. S 19304800 SELEX ZF_RANBP s21 0.033861 +ZRANB2 ENSG00000132485 no Homo_sapiens AGGUAG 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.033861 +ZRANB2 ENSG00000132485 no Homo_sapiens AGGUAU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.134437** +ZRANB2 ENSG00000132485 no Homo_sapiens AGGUCU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.022593 +ZRANB2 ENSG00000132485 no Homo_sapiens AGGUUA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. Fluorescence anisotropy. S 19304800 SELEX ZF_RANBP s21 0.06733 +ZRANB2 ENSG00000132485 no Homo_sapiens AGGUUU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.06733 +ZRANB2 ENSG00000132485 no Homo_sapiens CGGUAA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. Fluorescence anisotropy. S 19304800 SELEX ZF_RANBP s21 0.01937 +ZRANB2 ENSG00000132485 no Homo_sapiens CGGUAG 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.071476 +ZRANB2 ENSG00000132485 no Homo_sapiens CGGUAU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.142245** +ZRANB2 ENSG00000132485 no Homo_sapiens CGGUCU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.04773 +ZRANB2 ENSG00000132485 no Homo_sapiens GAGGUU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.000122 +ZRANB2 ENSG00000132485 no Homo_sapiens GGGUAA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.094988 +ZRANB2 ENSG00000132485 no Homo_sapiens GGGUGA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.031873 +ZRANB2 ENSG00000132485 no Homo_sapiens GGUAAAGGU 9 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1302 1.000000** +ZRANB2 ENSG00000132485 no Homo_sapiens GGUGGU 6 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1301 1.000000** +ZRANB2 ENSG00000132485 no Homo_sapiens GGUGGUGGU 9 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1303 1.000000** +ZRANB2 ENSG00000132485 no Homo_sapiens UGGUAA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.01937 +HNRNPA1 HNRNPA1 no Gallus_gallus GGGGA 5 Mutagenesis;UV cross-linking AEDB 15208309 UV cross-linking N/A 1304 1.000000** +HNRNPA1 ENSMUSG00000046434 no Mus_musculus UAGAGU 6 splicing assays and Immunoprecipitation;UV cross-linking AEDB 9121425 other HNRNPA1;RRM 1305 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens GAGGAAGGUG 10 In vitro splicing assays;UV cross-linking AEDB 12612063 UV cross-linking HNRNPA1;RRM 1306 1.000000** +SRSF5 ENSRNOG00000005513 no Rattus_norvegicus GAAGAAGAAG 10 In Vivo and In Vitro Splicing Assays;Gel mobility shift AEDB 8755518 other RRM 1307 1.000000** +HNRNPH1 ENSRNOG00000003399 no Rattus_norvegicus GGAGAGAAGGGA 12 Immunoprecipitation;UV cross-linking AEDB 11421362;10753970 UV cross-linking ZF_RNPHF 1308 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens GAAAGAAU 8 In vivo splicing assay;Mutagenesis;In vitro binding AEDB 14709600 other RRM 1309 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CAGACAA 7 Natural ocurring mutant AEDB 12829008 other RRM 1310 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GACCCGCA 8 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1311 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GGAAGAAC 8 In vitro splicing AEDB 19273129 other RRM 1312 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens GAAGAAGGAAA 11 In vivo splicing assay;Mutagenesis;In vitro binding AEDB 14709600 other RRM 1313 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens GGCUCCCCC 9 In Vitro Splicing;Uv cross-linking;HeLa cell AEDB 9826658 UV cross-linking RRM 1314 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens AAGAAGAAG 9 Mutagenesis;UV Cross-linking and Immunoprecipitation Assays;In Vitro Splicing Assays AEDB 10748133;12649279 UV cross-linking;other RRM 1315 1.000000** +RBMX ENSG00000147274 no Homo_sapiens AAGUAACAA 9 Competition experiments AEDB 12761049 other RRM 1316 1.000000** +PTBP2 ENSMUSG00000028134 no Mus_musculus CUCUC 5 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking RRM 1317 1.000000** +CELF2 ENSGALG00000006713 no Gallus_gallus UGUGUCCUGUG 11 Gel mobility shift and UV cross-linking AEDB 11931771;10801888;9671461 UV cross-linking RRM 1318 1.000000** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAGGAG 9 in vitro splicing and UV crosslinking AEDB 10094307 UV cross-linking RRM 1319 1.000000** +HNRNPH1 ENSMUSG00000007850 no Mus_musculus GGGGGCUG 8 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking ZF_RNPHP 1320 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens CACCACCACC 10 In vitro splicing AEDB 19273129 other CSD 1321 1.000000** +KHSRP ENSMUSG00000007670 no Mus_musculus UGCAUG 6 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking KH 1322 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GGCUGCAA 8 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1323 1.000000** +SRSF1 ENSMUSG00000018379 no Mus_musculus CAGACAA 7 UV crosslink; immunoprecipitation; SDS-PAGE AEDB 11925564 UV cross-linking RRM 1324 1.000000** +HNRNPF ENSMUSG00000042079 no Mus_musculus GGGGGCUG 8 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking RRM;ZF_RNPHP 1325 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAAGGA 6 In Vitro Splicing;Uv cross-linking;HeLa cell AEDB 8676495;12525645;9371566 UV cross-linking RRM 1326 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens UGAUGGAGA 9 Deletion analysis;EMSA and UV Cross-linking AEDB 15247216 UV cross-linking;EMSA RRM 1327 1.000000** +TRA2A ENSG00000164548 no Homo_sapiens AGAAAGAAGAAA 12 other AEDB 12913074 other RRM 1328 1.000000** +PURH ENSGALG00000003570 no Gallus_gallus UGUGUCCUGUG 11 Gel mobility shift and UV cross-linking AEDB 11931771;10801888;9671461 UV cross-linking MGS;AICARFT_IMPCHAS 1329 1.000000** +SRSF5 ENSG00000100650 no Homo_sapiens CAACAGC 8 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1330 1.000000** +HNRNPF ENSG00000169813 no Homo_sapiens GAGGAAGGUG 10 In vitro splicing assays;UV cross-linking AEDB 12612063 UV cross-linking RRM;ZF_RNPHP 1331 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens AGAGGAAGGCGA 12 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1332 1.000000** +SRSF5 ENSG00000100650 no Homo_sapiens CCGCAGG 8 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1333 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GACCACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCCACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUCACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUCACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACUACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCUACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUUACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACCCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUCCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACUCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACCACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCCACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUCACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUCACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACUACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCUACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUUACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACCCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUCCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACUCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACCACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCCACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUCACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUCACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACUACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCUACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUUACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACCCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUCCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACUCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACCACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCCACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUCACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUCACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACUACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCUACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUUACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACCCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUCCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GACUCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGC 7 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1335 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAGGAAGGUG 10 In vitro splicing assays;UV cross-linking AEDB 12612063 UV cross-linking RRM 1336 1.000000** +HNRNPH1 ENSGALG00000005955 no Gallus_gallus GGGGCUG 7 Mutagenesis;UV cross-linking AEDB 15208309 UV cross-linking ZF_RNPHF 1337 1.000000** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GGAGAGAAGGGA 12 Immunoprecipitation;UV cross-linking AEDB 11421362;10753970 UV cross-linking RRM 1338 1.000000** +YBX1 ENSG00000065978 no Homo_sapiens CAACCACAA 9 In vitro assays;SDS-PAGE with HeLa nuclear extracts AEDB 11447123 other CSD 1339 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUCUUUU 7 In vivo splicing assay;Mutagenesis;UV cross-linking AEDB 14966131 UV cross-linking RRM 1340 1.000000** +PTBP1 ENSRNOG00000010448 no Rattus_norvegicus UCUUCUU 7 UV cross-linking AEDB 8070413;9436911;9214659 UV cross-linking RRM 1341 1.000000** +HNRNPA1 HNRNPA1 no Gallus_gallus AGGGU 5 Mutagenesis;UV cross-linking AEDB 15208309 UV cross-linking N/A 1342 1.000000** +SRSF5 ENSG00000100650 no Homo_sapiens CACAGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UACAGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CGCAGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UGCAGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CACGGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UACGGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CGCGGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UGCGGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CACAUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UACAUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CGCAUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UGCAUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CACGUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UACGUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CGCGUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UGCGUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CACAGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UACAGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CGCAGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UGCAGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CACGGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UACGGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CGCGGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UGCGGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CACAUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UACAUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CGCAUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UGCAUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CACGUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UACGUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens CGCGUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF5 ENSG00000100650 no Homo_sapiens UGCGUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** +SRSF2 ENSG00000161547 no Homo_sapiens AGAGGAAGGCGA 12 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1344 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAAGGAC 7 In vitro splicing AEDB 19273129 other RRM 1345 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens CUAGACUAGA 10 Western blotting;Immunoprecipitation and cross-linking. AEDB 9858549;7565800;10406810;9016638 UV cross-linking RRM 1346 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GAGGAAGGUG 10 In vitro splicing assays;UV cross-linking AEDB 12612063 UV cross-linking ZF_RNPHP 1347 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens UGCCGUU 7 UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts AEDB 9858550 UV cross-linking RRM 1348 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GGACAA 6 UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts AEDB 9858550 UV cross-linking RRM 1349 1.000000** +HNRNPH1 ENSRNOG00000003399 no Rattus_norvegicus GAGGGAG 7 Immunoprecipitation;UV cross-linking AEDB 11421362;10753970 UV cross-linking ZF_RNPHF 1350 1.000000** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAAGAA 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAAGAA 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAGGAA 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAGGAA 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAAGAG 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAAGAG 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAGGAG 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAGGAG 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** +SRSF2 ENSG00000161547 no Homo_sapiens GAAGAAGAA 9 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1352 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAAAGGAGA 9 RNA isolation and Western blot AEDB 11847131;9343212 other RRM 1353 1.000000** +SRSF3 ENSG00000112081 no Homo_sapiens CACCACCACC 10 In vitro splicing AEDB 19273129 other RRM 1354 1.000000** +SRSF5 ENSG00000100650 no Homo_sapiens GAGGAAGAA 9 Gel mobility shift;S100 competition assays;UV Cross-linking and Immunoprecipitation AEDB 9436904;8388541;7651409 UV cross-linking RRM 1355 1.000000** +SXL FBGN0264270 no Drosophila_melanogaster UUUUUUUU 8 In vitro RNA binding AEDB 1690860;7680770;7958879 other RRM 1356 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens AGAUCC 4 In vitro splicing assays and RNA competition assays AEDB 10022872;9710624;7623851 other RRM 1357 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGACA 6 In vivo splicing assay;UV cross-linking AEDB 12833158 UV cross-linking RRM 1358 1.000000** +PTBP1 ENSMUSG00000006498 no Mus_musculus CUCUCU 6 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 9234723 UV cross-linking RRM 1359 1.000000** +SRSF7 ENSG00000115875 no Homo_sapiens GAAGAAGAA 9 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1360 1.000000** +RBMX ENSG00000147274 no Homo_sapiens AAGU 4 Mutagenesis;Deletion analysis AEDB 12761049 other RRM 1361 1.000000** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAAGAG 9 UV crosslinking and competition assay AEDB 10094307 UV cross-linking RRM 1362 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens UUAG 4 In vitro splicing assays and RNA competition assays AEDB 10022872;9710624;7623851 other RRM 1363 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CUGAGUU 7 Natural ocurring mutant AEDB 12829008 other RRM 1364 1.000000** +SRSF6 ENSRNOG00000006380 no Rattus_norvegicus AAGAAAAGGGA 11 Deletion analysis;UV cross-linking AEDB 12531473 UV cross-linking RRM 1365 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UUAG 4 In vitro splicing assays and RNA competition assays AEDB 10022872;9710624;7623851 other RRM 1366 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAAGGAG 7 In vitro splicing AEDB 19273129 other RRM 1367 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUUUUCCC 8 Gel mobility shift;Mutagenesis;UV cross-linking;Competition experiments AEDB 9858533 UV cross-linking;other RRM 1368 1.000000** +TRA2A ENSRNOG00000009156 no Rattus_norvegicus AAGAAAAGGGA 11 Deletion analysis;UV cross-linking AEDB 12531473 UV cross-linking RRM 1369 1.000000** +PTBP2 ENSMUSG00000028134 no Mus_musculus CUCUCU 6 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 9234723 UV cross-linking RRM 1370 1.000000** +HNRNPF HNRNPF no Gallus_gallus GGGGCUG 7 Mutagenesis;UV cross-linking AEDB 15208309 UV cross-linking N/A 1371 1.000000** +PTBP1 ENSMUSG00000006498 no Mus_musculus CUCUC 5 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking RRM 1372 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens AGAGCAGG 8 In Vitro Splicing;Uv cross-linking;HeLa cell AEDB 9826658 UV cross-linking RRM 1373 1.000000** +SRSF6 ENSRNOG00000006380 no Rattus_norvegicus GGAGCACCUGGC 12 other AEDB 12549914 other RRM 1374 1.000000** +TRA2B ENSG00000136527 no Homo_sapiens GAAAGAAG 8 In vivo splicing assay;Mutagenesis;In vitro binding AEDB 14709600 other RRM 1375 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens UUAAUUUCAAGA 12 In vivo splicing assay;Deletion analysis AEDB 10766763 other RRM 1376 1.000000** +RBMX ENSG00000147274 no Homo_sapiens AAGUGUU 7 Mutagenesis;UV cross-linking AEDB 12761049 UV cross-linking RRM 1377 1.000000** +NOVA1 ENSG00000139910 no Homo_sapiens UCAGUCAC 8 RNA affinity binding assays AEDB 15367696 other KH 1378 1.000000** +PTBP1 ENSMUSG00000006498 no Mus_musculus CAGGUAAGAC 10 UV cross-linking;Competition experiments AEDB 8566754 UV cross-linking;other RRM 1379 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens UGAUGGAGA 9 Deletion analysis;EMSA and UV Cross-linking AEDB 15247216 UV cross-linking;EMSA RRM 1380 1.000000** +PTBP1 ENSRNOG00000010448 no Rattus_norvegicus CUCCUCCCUC 10 UV cross-linking;immunoprecipitation and competition assays;Western blot analysis AEDB 10982855 UV cross-linking RRM 1381 1.000000** +PTBP1 ENSMUSG00000006498 no Mus_musculus UUUCUCU 7 Mutagenesis;UV cross-linking AEDB 11158574;11116151 other;UV cross-linking RRM 1382 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GGAAGAAG 8 In vitro splicing AEDB 19273129 other RRM 1383 1.000000** +SRSF6 ENSG00000124193 no Homo_sapiens CCACACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UCACACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CUACACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UUACACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CCUCACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UCUCACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CUUCACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UUUCACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CCACUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UCACUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CUACUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UUACUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CCUCUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UCUCUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CUUCUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UUUCUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CCACAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UCACAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CUACAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UUACAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CCUCAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UCUCAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CUUCAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UUUCAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CCACUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UCACUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CUACUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UUACUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CCUCUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UCUCUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens CUUCUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF6 ENSG00000124193 no Homo_sapiens UUUCUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens AAGAGGA 7 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1385 1.000000** +RBMX ENSG00000147274 no Homo_sapiens AAGAAGGAAGG 11 In vitro splicing;In vivo splicing AEDB 11726560;12165565;10931943 other RRM 1386 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGG 4 Immunoprecipitation;UV cross-linking AEDB 15506926 UV cross-linking ZF_RNPHF 1387 1.000000** +SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGGAG 7 Immunoprecipitation;UV cross-linking AEDB 11421362;10753970 UV cross-linking RRM 1388 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAAGAAGAA 9 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1389 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens GAGGAAGAA 9 Gel mobility shift;S100 competition assays;UV Cross-linking and Immunoprecipitation AEDB 9436904;8388541;7651409 UV cross-linking RRM 1390 1.000000** +HNRNPH1 ENSG00000169045 no Homo_sapiens GGGA 4 snRNA inactivation in HeLa cell nuclear extract;Western blot AEDB 11847131;9343212 other ZF_RNPHF 1391 1.000000** +SRSF6 ENSG00000124193 no Homo_sapiens GAGGAAGAA 9 Gel mobility shift;S100 competition assays;UV Cross-linking and Immunoprecipitation AEDB 9436904;8388541;7651409 UV cross-linking RRM 1392 1.000000** +SRSF1 ENSG00000136450 no Homo_sapiens CACACGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCACGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CAGACGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGGACGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CACCCGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CAGCCGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CACAGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CACCGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CAGCGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CACACGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCACGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CAGACGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGGACGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CACCCGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CAGCCGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CACAGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CACCGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CAGCGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** +NOVA1 ENSG00000139910 no Homo_sapiens UCAC 4 RNA affinity binding assays AEDB 15367696 other KH 1394 1.000000** +SRSF2 ENSG00000161547 no Homo_sapiens GAAAGGAGA 9 RNA isolation and Western blot AEDB 11847131;9343212 other RRM 1395 1.000000** +HNRNPAB ENSG00000197451 no Homo_sapiens AUAGCA 6 In vitro splicing assays AEDB 12426391 other RRM 1396 1.000000** +HNRNPA1 ENSG00000135486 no Homo_sapiens UAGG 4 Immunoprecipitation;UV cross-linking AEDB 15506926 UV cross-linking RRM 1397 1.000000** +PTBP1 ENSG00000011304 no Homo_sapiens UUCUUC 6 In vivo splicing assay;Mutagenesis;UV cross-linking AEDB 14966131 UV cross-linking RRM 1398 1.000000** diff --git a/tests/unit/format-ATtRACT-motifs/ATtRACT/README.txt b/tests/unit/format-ATtRACT-motifs/ATtRACT/README.txt new file mode 100644 index 0000000..211557e --- /dev/null +++ b/tests/unit/format-ATtRACT-motifs/ATtRACT/README.txt @@ -0,0 +1,16 @@ +Gene_name ( no need to explain :-) right?) +Gene_id ( no need to explain :-) right?) +Mutated (if the target gene is mutated) +Organism ( no need to explain :-) right?) +Motif ( no need to explain :-) right?) +Len (lenght of the motif) +Experiment_description(when available) +Database (Database from where the motifs were extracted PDB: Protein data bank, C: Cisbp-RNA, R:RBPDB, S: Spliceaid-F, AEDB:ASD) +Pubmed (pubmed ID) +Experiment (type of experiment; short description) +Family (domain) +Matrix_id (linked to the file PWM.txt) +Score (Qscore refer to the paper) + +The field Matrix_id refers to the pwm id that you can find in the pwm.txt file. +The position weight matrices are annotated in fasta format. diff --git a/tests/unit/format-ATtRACT-motifs/ATtRACT/pwm.txt b/tests/unit/format-ATtRACT-motifs/ATtRACT/pwm.txt new file mode 100755 index 0000000..b32a2e9 --- /dev/null +++ b/tests/unit/format-ATtRACT-motifs/ATtRACT/pwm.txt @@ -0,0 +1,12801 @@ +>904 5 +0.00961538461538 0.00961538461538 0.00961538461538 0.971153846154 +0.00961538461538 0.00961538461538 0.971153846154 0.00961538461538 +0.00961538461538 0.00961538461538 0.971153846154 0.00961538461538 +0.00961538461538 0.00961538461538 0.971153846154 0.00961538461538 +0.971153846154 0.00961538461538 0.00961538461538 0.00961538461538 +>s36 7 +0.844325153374 0.000766871165644 0.154141104294 0.000766871165644 +0.0774539877301 0.690950920245 0.0774539877301 0.154141104294 +0.000766871165644 0.0774539877301 0.154141104294 0.76763803681 +0.76763803681 0.0774539877301 0.000766871165644 0.154141104294 +0.0774539877301 0.0774539877301 0.76763803681 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tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RAVER1_152 +08a5f36f750069802a1ffe2e76459eb8 tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RBM38_M049_0.6 +6985f118535780b5cd45ba9aabd7b086 tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RBM45_M209_0.6 +ef0698b653a82e029ffdf4b03dda5454 tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RC3H1_350 +121eb366d997aae2ca0374ff9653163a tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RC3H1_528 +3ba642994552986507885aea2056a183 tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_SRSF1_1324 +a26cb4ac8e159f9295a1fa8a4b8560e6 tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_SYNCRIP_158 +06d0397880b3a801a0f060535877f5ac tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_329 +5c9a214a319b868c625f2d3e1d8b846a tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_358 +b78a3f655c07b0e1b7299d96c62bc6ae tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_468 +e9ee4ba46bb87ad8a3ecba39165512b6 tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_479 +4e7f195d5fd1356059de43d0634aec40 tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_568 +a27f5599d177dc5f79f01ffd9799120c tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_YBX2_153 +1f15d07ab82d1f85a5e5ca7edebb138a tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_YBX3_113 diff --git a/tests/unit/format-ATtRACT-motifs/expected_output_mmu.txt b/tests/unit/format-ATtRACT-motifs/expected_output_mmu.txt new file mode 100644 index 0000000..580891b --- /dev/null +++ b/tests/unit/format-ATtRACT-motifs/expected_output_mmu.txt @@ -0,0 +1,55 @@ +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_3IVK_519 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_3IVK_574 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_4KZD_464 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_4KZE_437 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_4Q9Q_423 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_4Q9R_433 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_ADARB1_401 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_ADARB1_527 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_DAZL_348 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_DAZL_357 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_DAZL_558 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_ELAVL3_567 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_HNRNPA1_1305 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_HNRNPF_1325 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_HNRNPH1_1320 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_KHDRBS1_M060_0.6 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_KHSRP_1322 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_LIN28A_369 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_LIN28A_395 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_LIN28A_444 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_LIN28A_513 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_LIN28A_556 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_LIN28A_576 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_MSI1_328 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_NFKB1_453 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_NFKB1_474 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_NFKB1_549 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_NOVA2_179 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PCBP1_M207_0.6 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PCBP3_M188_0.6 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PIWIL1_415 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PTBP1_1359 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PTBP1_1372 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PTBP1_1379 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PTBP1_1382 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PTBP2_1317 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PTBP2_1370 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PUM2_115 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PUM2_329_11780640.pfm +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PUM2_66 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_PUM2_M286_0.6 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RAVER1_152 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RBM38_M049_0.6 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RBM45_M209_0.6 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RC3H1_350 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_RC3H1_528 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_SRSF1_1324 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_SYNCRIP_158 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_329 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_358 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_468 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_479 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_TLR3_568 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_YBX2_153 +tests/unit/format-ATtRACT-motifs/ATtRACT_mmu/motif_YBX3_113 diff --git a/tests/unit/plot_sequence_logos/expected_output.md5 b/tests/unit/plot_sequence_logos/expected_output.md5 new file mode 100644 index 0000000..b13d807 --- /dev/null +++ b/tests/unit/plot_sequence_logos/expected_output.md5 @@ -0,0 +1,5 @@ +60dd0b7f9065f07660c385bac79ca94e ./tests/unit/plot_sequence_logos/motif_HNRNPF_820.png +25eb71df5f876d8f575dbc417319487c ./tests/unit/plot_sequence_logos/motif_HNRNPF_821.png +25eb71df5f876d8f575dbc417319487c ./tests/unit/plot_sequence_logos/motif_HNRNPF_822.png +3e8890a0edb2664d2d8603119b3a96d8 ./tests/unit/plot_sequence_logos/motif_HNRNPF_823.png +b9c855c85a7777f8fb12806aed9fd6b9 ./tests/unit/plot_sequence_logos/motif_HNRNPF_824.png diff --git a/tests/unit/plot_sequence_logos/expected_output.txt b/tests/unit/plot_sequence_logos/expected_output.txt new file mode 100644 index 0000000..bb621b4 --- /dev/null +++ b/tests/unit/plot_sequence_logos/expected_output.txt @@ -0,0 +1,6 @@ +./tests/unit/plot_sequence_logos/motif_HNRNPF_820.png +./tests/unit/plot_sequence_logos/motif_HNRNPF_821.png +./tests/unit/plot_sequence_logos/motif_HNRNPF_822.png +./tests/unit/plot_sequence_logos/motif_HNRNPF_823.png +./tests/unit/plot_sequence_logos/motif_HNRNPF_824.png + diff --git a/tests/unit/plot_sequence_logos/motif_HNRNPF_820 b/tests/unit/plot_sequence_logos/motif_HNRNPF_820 new file mode 100644 index 0000000..c7e97c1 --- /dev/null +++ b/tests/unit/plot_sequence_logos/motif_HNRNPF_820 @@ -0,0 +1,9 @@ +// +NA HNRNPF_820 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/tests/unit/plot_sequence_logos/motif_HNRNPF_821 b/tests/unit/plot_sequence_logos/motif_HNRNPF_821 new file mode 100644 index 0000000..cf7fa83 --- /dev/null +++ b/tests/unit/plot_sequence_logos/motif_HNRNPF_821 @@ -0,0 +1,11 @@ +// +NA HNRNPF_821 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/tests/unit/plot_sequence_logos/motif_HNRNPF_822 b/tests/unit/plot_sequence_logos/motif_HNRNPF_822 new file mode 100644 index 0000000..50cf5fb --- /dev/null +++ b/tests/unit/plot_sequence_logos/motif_HNRNPF_822 @@ -0,0 +1,11 @@ +// +NA HNRNPF_822 + A C G T +01 0.962 0.962 97.115 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 0.962 0.962 97.115 0.962 +06 0.962 0.962 97.115 0.962 +07 0.962 0.962 97.115 0.962 +// \ No newline at end of file diff --git a/tests/unit/plot_sequence_logos/motif_HNRNPF_823 b/tests/unit/plot_sequence_logos/motif_HNRNPF_823 new file mode 100644 index 0000000..7f7cbeb --- /dev/null +++ b/tests/unit/plot_sequence_logos/motif_HNRNPF_823 @@ -0,0 +1,9 @@ +// +NA HNRNPF_823 + A C G T +01 97.115 0.962 0.962 0.962 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// \ No newline at end of file diff --git a/tests/unit/plot_sequence_logos/motif_HNRNPF_824 b/tests/unit/plot_sequence_logos/motif_HNRNPF_824 new file mode 100644 index 0000000..b0b3183 --- /dev/null +++ b/tests/unit/plot_sequence_logos/motif_HNRNPF_824 @@ -0,0 +1,9 @@ +// +NA HNRNPF_824 + A C G T +01 0.962 0.962 0.962 97.115 +02 0.962 0.962 97.115 0.962 +03 0.962 0.962 97.115 0.962 +04 0.962 0.962 97.115 0.962 +05 97.115 0.962 0.962 0.962 +// diff --git a/workflow/Snakefile b/workflow/Snakefile new file mode 100755 index 0000000..8d35298 --- /dev/null +++ b/workflow/Snakefile @@ -0,0 +1,529 @@ +############################################################################## +# +# Snakemake pipeline: +# Infer RBPs binding sites on a given RNA sequence +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 02-07-2020 +# LICENSE: Apache_2.0 +# +############################################################################## + +# imports +import sys +import os +import glob +import traceback + +# local rules +localrules: all, create_results_directory + +def gather_motifs_names(pwm_dir): + """ + Return the list of names of all PWM files in the PWM directory + """ + regex = os.path.join( + pwm_dir, + "*" + ) + l = [i.split("/")[-1] for i in glob.glob(regex)] + return(l) + +rule all: + """ + Target rule with final output of the pipeline + """ + input: + PDF_Heatmap_file = expand( + os.path.join( + "{outdir}", + "ProbabilityVsSequence.pdf" + ), + outdir = config["outdir"] + ) + +rule create_results_directory: + """ + Create directories for the results + """ + output: + TEMP_ = temp( + os.path.join( + "{outdir}", + "outdir" + ) + ) + + params: + DIR_output_dir = "{outdir}", + LOG_local_log = os.path.join( + "{outdir}", + "local_log" + ), + LOG_cluster_log = os.path.join( + "{outdir}", + "cluster_log" + ) + + conda: + "envs/bash.yml" + + singularity: + "docker://bash:4.4.18" + + shell: + """ + mkdir -p {params.DIR_output_dir}; \ + mkdir -p {params.LOG_local_log}; \ + mkdir -p {params.LOG_cluster_log}; \ + touch {output.TEMP_} + """ + +rule plot_sequence_logos: + """ + Plot sequence logo for the motifs + """ + input: + FILE_pwm = os.path.abspath( + os.path.join( + config["pwm_directory"], + "{pwm_dir}" + ) + ), + SCRIPT_ = os.path.join( + config["pipeline_path"], + "workflow", + "scripts", + "sequence_logos.py" + ), + TEMP_ = os.path.join( + "{outdir}", + "outdir" + ) + + output: + PNG_sequence_logos = os.path.join( + "{outdir}", + "sequence_logos", + "{pwm_dir}.png" + ) + + params: + DIR_sequence_logos = os.path.join( + "{outdir}", + "sequence_logos" + ), + LOG_cluster_log = os.path.join( + "{outdir}", + "cluster_log", + "plot_sequence_logos.{pwm_dir}.log" + ) + + log: + LOG_local_stdout = os.path.join( + "{outdir}", + "local_log", + "plot_sequence_logos.{pwm_dir}.stdout.log" + ), + LOG_local_stderr = os.path.join( + "{outdir}", + "local_log", + "plot_sequence_logos.{pwm_dir}.stderr.log" + ) + + benchmark: + os.path.join( + "{outdir}", + "local_log", + "plot_sequence_logos.{pwm_dir}.benchmark.log" + ) + + conda: + "envs/plot_sequence_logos.yml" + + singularity: + "docker://zavolab/pythonlogomaker:0.8" + + shell: + """ + python {input.SCRIPT_} \ + --input_file {input.FILE_pwm} \ + --output_location {params.DIR_sequence_logos} \ + 1> {log.LOG_local_stdout} 2> {log.LOG_local_stderr} + """ + +rule prepare_MotEvo_parameters: + """ + Prepare text file with parameters for MotEvo runs + """ + input: + TEMP_ = os.path.join( + "{outdir}", + "outdir" + ) + + output: + TXT_MotEvo_parameters = os.path.join( + "{outdir}", + "MotEvo_parameters.txt" + ) + + params: + FLOAT_MotEvo_bg_binding_prior = \ + config["MotEvo_bg_binding_prior"], + FLOAT_MotEvo_min_binding_posterior = \ + config["MotEvo_min_binding_posterior"], + INT_MotEvo_Markov_chain_order = \ + config["MotEvo_Markov_chain_order"], + LOG_cluster_log = os.path.join( + "{outdir}", + "cluster_log", + "prepare_MotEvo_parameters.log" + ) + + log: + LOG_local_stdout = os.path.join( + "{outdir}", + "local_log", + "prepare_MotEvo_parameters.stdout.log" + ), + LOG_local_stderr = os.path.join( + "{outdir}", + "local_log", + "prepare_MotEvo_parameters.stderr.log" + ) + + benchmark: + os.path.join( + "{outdir}", + "local_log", + "prepare_MotEvo_parameters.benchmark.log" + ) + + run: + with open(output.TXT_MotEvo_parameters, "w") as ofile, open(log.LOG_local_stderr, "w") as logfile: + try: + # ================================= + bgprior = params.FLOAT_MotEvo_bg_binding_prior + parampath = output.TXT_MotEvo_parameters + genome_tag = "MOTEVO" + markovorderbg = params.INT_MotEvo_Markov_chain_order + bga = 0.25 + bgt = 0.25 + bgc = 0.25 + bgg = 0.25 + restrictparses = 0 + printsiteals = 1 + minposterior = params.FLOAT_MotEvo_min_binding_posterior + # ================================= + tree = str('TREE (' + genome_tag + ':1);') + with open(parampath, 'w') as paramfile: + paramfile.write( + 'refspecies ' + genome_tag + os.linesep + + tree + os.linesep + + 'Mode TFBS' + os.linesep + + 'EMprior 0' + os.linesep + + 'markovorderBG ' + str(markovorderbg) + os.linesep + + 'bgprior ' + str(bgprior) + os.linesep + + 'bg A ' + str(bga) + os.linesep + + 'bg T ' + str(bgt) + os.linesep + + 'bg G ' + str(bgg) + os.linesep + + 'bg C ' + str(bgc) + os.linesep + + 'restrictparses ' + str(restrictparses) + os.linesep + + 'singlestrand 1' + os.linesep + + 'sitefile posterior_sites' + os.linesep + + 'priorfile posteriors' + os.linesep + + 'printsiteals ' + str(printsiteals) + os.linesep + + 'minposterior ' + str(minposterior) + os.linesep) + except Exception: + traceback.print_exc(file = logfile) + raise Exception( + "Workflow error at rule: prepare_MotEvo_parameters" + ) + +rule prepare_sequence_for_MotEvo: + """ + Create a FASTA-formatted file with the input sequence + """ + input: + TEMP_ = os.path.join( + "{outdir}", + "outdir" + ) + + output: + FASTA_MotEvo_input = os.path.join( + "{outdir}", + "sequence.fasta" + ), + + params: + STR_sequence = config["sequence"], + STR_MotEvo_fasta_header_tag = ">>MOTEVO_input-sequence", + LOG_cluster_log = os.path.join( + "{outdir}", + "cluster_log", + "prepare_sequence_for_MotEvo.log" + ) + + log: + # stdout is used by the echo command + LOG_local_stderr = os.path.join( + "{outdir}", + "local_log", + "prepare_sequence_for_MotEvo.stderr.log" + ) + + benchmark: + os.path.join( + "{outdir}", + "local_log", + "prepare_sequence_for_MotEvo.benchmark.log" + ) + + conda: + "envs/bash.yml" + + singularity: + "docker://bash:4.4.18" + + shell: + """ + echo "{params.STR_MotEvo_fasta_header_tag}" \ + 1> {output.FASTA_MotEvo_input} 2> {log.LOG_local_stderr} && \ + echo "{params.STR_sequence}" \ + 1>> {output.FASTA_MotEvo_input} 2> {log.LOG_local_stderr} \ + """ + +rule run_MotEvo_analysis: + """ + Run MotEvo for a given FASTA sequence and a given PWM + """ + input: + TXT_MotEvo_parameters = os.path.join( + "{outdir}", + "MotEvo_parameters.txt" + ), + DIR_pwm = os.path.abspath( + os.path.join( + config["pwm_directory"], + "{pwm_dir}", + ) + ), + FASTA_MotEvo_input = os.path.join( + "{outdir}", + "sequence.fasta" + ) + + output: + DIR_MotEvo_results_pwm = directory( + os.path.join( + "{outdir}", + "motevo", + "{pwm_dir}" + ) + ) + + params: + TXT_MotEvo_parameters_abspath = os.path.abspath( + os.path.join( + "{outdir}", + "MotEvo_parameters.txt", + ) + ), + FASTA_MotEvo_input_abspath = os.path.abspath( + os.path.join( + "{outdir}", + "sequence.fasta", + ) + ), + LOG_cluster_log = os.path.join( + "{outdir}", + "cluster_log", + "run_MotEvo_analysis.{pwm_dir}.log" + ) + + log: + LOG_local_stdout = os.path.join( + "{outdir}", + "local_log", + "run_MotEvo_analysis.{pwm_dir}.stdout.log" + ), + LOG_local_stderr = os.path.join( + "{outdir}", + "local_log", + "run_MotEvo_analysis.{pwm_dir}.stderr.log" + ) + + benchmark: + os.path.join( + "{outdir}", + "local_log", + "run_MotEvo_analysis.{pwm_dir}.benchmark.log" + ) + + conda: + "envs/motevo.yml" + + singularity: + "docker://zavolab/motevo:1.12" + + shell: + """ + (mkdir -p {output.DIR_MotEvo_results_pwm} && \ + cd {output.DIR_MotEvo_results_pwm} && \ + motevo \ + {params.FASTA_MotEvo_input_abspath} \ + {params.TXT_MotEvo_parameters_abspath} \ + {input.DIR_pwm}) \ + 1> {log.LOG_local_stdout} 2> {log.LOG_local_stderr} + """ + +rule combine_MotEvo_results: + """ + Combine all motevo results into one tsv file + """ + input: + DIR_MotEvo_results_pwm = expand( + os.path.join( + "{outdir}", + "motevo", + "{pwm_dir}" + ), + outdir = config["outdir"], + pwm_dir = gather_motifs_names(config["pwm_directory"]) + ), + SCRIPT_ = os.path.join( + config["pipeline_path"], + "workflow", + "scripts", + "combine-motevo-results.py" + ) + + output: + TSV_combined_MotEvo_results = os.path.join( + "{outdir}", + "combined_MotEvo_results.tsv" + ) + + params: + STR_binding_sites_filename = "posterior_sites", + LOG_cluster_log = os.path.join( + "{outdir}", + "cluster_log", + "combine_MotEvo_results.log" + ) + + log: + LOG_local_stdout = os.path.join( + "{outdir}", + "local_log", + "combine_MotEvo_results.stdout.log" + ), + LOG_local_stderr = os.path.join( + "{outdir}", + "local_log", + "combine_MotEvo_results.stderr.log" + ) + + benchmark: + os.path.join( + "{outdir}", + "local_log", + "combine_MotEvo_results.benchmark.log" + ) + + conda: + "envs/combine-motevo-results.yml" + + singularity: + "docker://amancevice/pandas:1.0.1" + + shell: + """ + python {input.SCRIPT_} \ + --input_directories {input.DIR_MotEvo_results_pwm} \ + --filename {params.STR_binding_sites_filename} \ + --outfile {output.TSV_combined_MotEvo_results} \ + 1> {log.LOG_local_stdout} 2> {log.LOG_local_stderr} + """ + +rule plot_heatmap_of_MotEvo_results: + """ + Plot heatmap from the combined_MotEvo_results.tsv file + """ + input: + TSV_combined_MotEvo_results = os.path.join( + "{outdir}", + "combined_MotEvo_results.tsv" + ), + SCRIPT_ = os.path.join( + config["pipeline_path"], + "workflow", + "scripts", + "heatmap.r" + ), + PNG_sequence_logos = expand( + os.path.join( + "{outdir}", + "sequence_logos", + "{pwm_dir}.png" + ), + pwm_dir = gather_motifs_names(config["pwm_directory"]), + outdir = config["outdir"] + ) + output: + PDF_Heatmap_file = os.path.join( + "{outdir}", + "ProbabilityVsSequence.pdf" + ) + + params: + STRING_sequence = config["sequence"], + DIR_sequence_logos = os.path.join( + "{outdir}", + "sequence_logos" + ), + LOG_cluster_log = os.path.join( + "{outdir}", + "cluster_log", + "plot_heatmap_of_MotEvo_results.log" + ) + + log: + LOG_local_stdout = os.path.join( + "{outdir}", + "local_log", + "plot_heatmap_of_MotEvo_results.stdout.log" + ), + LOG_local_stderr = os.path.join( + "{outdir}", + "local_log", + "plot_heatmap_of_MotEvo_results.stderr.log" + ) + + benchmark: + os.path.join( + "{outdir}", + "local_log", + "plot_heatmap_of_MotEvo_results.benchmark.log" + ) + + conda: + "envs/plot_heatmap_of_MotEvo_results.yml" + + singularity: + "docker://zavolab/r-zavolab:4.0.0" + + shell: + """ + Rscript {input.SCRIPT_} \ + --input_tsv {input.TSV_combined_MotEvo_results} \ + --input_sequence {params.STRING_sequence} \ + --outfile {output.PDF_Heatmap_file} \ + --sequence_logos_directory {params.DIR_sequence_logos} \ + 1> {log.LOG_local_stdout} 2> {log.LOG_local_stderr} + """ diff --git a/workflow/config/SLURM-cluster-config.json b/workflow/config/SLURM-cluster-config.json new file mode 100755 index 0000000..10cf332 --- /dev/null +++ b/workflow/config/SLURM-cluster-config.json @@ -0,0 +1,59 @@ +{ + + "__default__": + { + "queue": "30min", + "time": "00:30:00", + "threads": "1", + "mem": "5G" + }, + + "plot_sequence_logos": + { + "queue": "30min", + "time": "00:05:00", + "threads": "1", + "mem": "1G" + }, + + "prepare_MotEvo_parameters": + { + "queue": "30min", + "time": "00:05:00", + "threads": "1", + "mem": "1G" + }, + + "prepare_sequence_for_MotEvo": + { + "queue": "30min", + "time": "00:05:00", + "threads": "1", + "mem": "1G" + }, + + "run_MotEvo_analysis": + { + "queue": "30min", + "time": "00:05:00", + "threads": "1", + "mem": "1G" + }, + + "combine_MotEvo_results": + { + "queue": "30min", + "time": "00:05:00", + "threads": "1", + "mem": "1G" + }, + + "plot_heatmap_of_MotEvo_results": + { + "queue": "30min", + "time": "00:05:00", + "threads": "1", + "mem": "1G" + } + +} diff --git a/workflow/config/config-template.yml b/workflow/config/config-template.yml new file mode 100755 index 0000000..d59ff39 --- /dev/null +++ b/workflow/config/config-template.yml @@ -0,0 +1,42 @@ +############################################################################### +# +# Config options for the snakemake pipeline +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 09-04-2020 +# LICENSE: Apache_2.0 +# +############################################################################### +--- + +# absolute path to the pipeline root directory +pipeline_path: + +# input sequence from the user +sequence: + +# path to the directory with TRANSFAC-formatted PWM files +# +# Please use an absolute path or a path relative to the +# pipeline root directory +pwm_directory: + +# path for the output directory +# +# Please use an absolute path or a path relative to the +# pipeline root directory +outdir: + +# MotEvo parameter: prior probability for the background binding +MotEvo_bg_binding_prior: + +# MotEvo parameter: prior minimum binding posterior probability +MotEvo_min_binding_posterior: + +# MotEvo parameter: order of the Markov chain +MotEvo_Markov_chain_order: + +... diff --git a/workflow/documentation.md b/workflow/documentation.md new file mode 100644 index 0000000..47c2b3e --- /dev/null +++ b/workflow/documentation.md @@ -0,0 +1,165 @@ +# BINDING-SCANNER: workflow documentation + +This document describes the individual steps of the workflow. For instructions +on installation and usage please see [here](../README.md). + +## Table of Contents +- [**Description of workflow steps**](#description-of-workflow-steps) + - [**Rule graph**](#rule-graph) + - [**Preparatory**](#preparatory) + - [**Config file**](#config-file) + - [**Snakemake Rules**](#snakemake-rules) + - [**all**](#all) + - [**create_results_directory**](#create_results_directory) + - [**plot_sequence_logos**](#plot_sequence_logos) + - [**prepare_MotEvo_parameters**](#prepare_MotEvo_parameters) + - [**prepare_sequence_for_MotEvo**](#prepare_sequence_for_MotEvo) + - [**run_MotEvo_analysis**](#run_MotEvo_analysis) + - [**combine_MotEvo_results**](#combine_MotEvo_results) + - [**plot_heatmap_of_MotEvo_results**](#plot_heatmap_of_MotEvo_results) + +## Description of workflow steps + +### Rule graph + +![rule_graph][rule-graph] + +Visual representation of workflow. Automatically prepared with +[Snakemake][docs-snakemake]. + +### Preparatory + +#### Config file + +##### Requirements + +- a config file as in [`config.yml`](config/config-template.yml) +- a pwm directory containing files with binding probabilities matrices of various motifs. + +Parameter name | Description | Data type(s) +--- | --- | --- +pipeline_path | Absolute path to the pipeline directory | `str` +sequence | Input Sequence | `str` +pwm_directory | Path to the directory with TRANSFAC-formatted PWM files | `str` +outdir | Path to the output directory | `str` +MotEvo_bg_binding_prior | MotEvo parameter: prior probability for the background binding | `float` +MotEvo_min_binding_posterior | MotEvo parameter: prior minimum binding posterior probability | `float` +MotEvo_Markov_chain_order | MotEvo parameter: order of the Markov chain | `float` + +### Snakemake Rules + +#### `all` + +Target rule with final output of the pipeline + +- **Input** + - A heatmap depicting all the motifs with their sequence logos and names as y-axis tick-labels; input sequence as x-axis; and each cell representing the probability of corresponding motif and the part of the sequence. + +#### `create_results_directory` + + Create directories for the results + +- **Parameters** + - Path to output directory + - Path to local log directory + - Path to cluster log directory + +- **Output** + - An output directory which will be used in all the successive rules + +#### `plot_sequence_logos` + + Plot sequence logo for the motifs. This rule will run as many number as times as the number of motifs or number of files in the pwm directory. + +- **Input** + - PWM file containg binding probability matrices + - Script that processes matrices to sequence logos png [`sequence_logos.py`](../workflow/scripts/sequence_logos.py) + - Output directory generated in the rule [**create_results_directory**](#create_results_directory) + +- **Parameters** + - Output directory for the logos + - File path of logs for each Pwm + +- **Output** + - A png file for each motif containing the sequence logo which will be used in the rule [**plot_heatmap_of_MotEvo_results**](#plot_heatmap_of_MotEvo_results) + +#### `prepare_MotEvo_parameters` + + Prepare text file with parameters for MotEvo runs + +- **Input** + - Output directory generated in the rule [**create_results_directory**](#create_results_directory) + +- **Parameters** + - Path to output directory for the logos + - File path for the logs for each Pwm file + +- **Output** + - A text file containing MotEvo paramaters which will be used in the rule [**run_MotEvo_analysis**](#run_MotEvo_analysis) + +#### `prepare_sequence_for_MotEvo` + + Create a FASTA-formatted file with the input sequence + +- **Input** + - Output directory generated in the rule [**create_results_directory**](#create_results_directory) + +- **Parameters** + - Input sequence + - Header tag for the sequence + - Path for the log of this rule + +- **Output** + - A fasta file which will be used in the rule [**run_MotEvo_analysis**](#run_MotEvo_analysis) + +#### `run_MotEvo_analysis` + + Run MotEvo for a given FASTA sequence and a given PWM + +- **Input** + - MotEvo parameters file generated in rule [**prepare_MotEvo_parameters**](#prepare_MotEvo_parameters) + - Path of the pwm files containing the binding probabilities matrices + - Fasta file generated in the rule [**prepare_sequence_for_MotEvo**](#prepare_sequence_for_MotEvo) + +- **Parameters** + - Absolute path of MotEvo parameters file generated in rule [**prepare_MotEvo_parameters**](#prepare_MotEvo_parameters) + - Absolute path of Fasta file generated in the rule [**prepare_sequence_for_MotEvo**](#prepare_sequence_for_MotEvo) + - Path for the log of this rule + +- **Output** + - A directory with files containing posterior sites information which will be used in the rule [**combine_MotEvo_results**](#combine_MotEvo_results) + +#### `combine_MotEvo_results` + + Combine all motevo results into one tsv file + +- **Input** + - A directory with files containing posterior sites information which is generated in [**run_MotEvo_analysis**](#run_MotEvo_analysis) + - Script that will do the job of combinining results in one tsv file [`combine-motevo-results.py`](../workflow/scripts/combine-motevo-results.py) + +- **Parameters** + - Name of the file which would contain posterior sites information + - Path for the log of this rule + +- **Output** + - A tsv file which gathers information of every analysed PWM directory. + +#### `plot_heatmap_of_MotEvo_results` + + Plot heatmap from the combined_MotEvo_results.tsv file + +- **Input** + - A TSV file containing information of every analysed PWM directory generated from rule [**combine_MotEvo_results**](#combine_MotEvo_results) + - Script that will plot the heatmap with sequence logos as y axis ticks [`heatmap.r`](../workflow/scripts/heatmap.r) + - Sequence logo generated for each motif from the rule [**plot_sequence_logos**](#plot_sequence_logos) + +- **Parameters** + - Input sequence + - Directory of all sequence logos + - Path for the log of this rule + +- **Output** + - A heatmap depicting all the motifs with their sequence logos and names as y-axis tick-labels; input sequence as x-axis; and each cell representing the probability of corresponding motif and the part of the sequence. + +[rule-graph]: ../images/rulegraph.svg +[docs-snakemake]: \ No newline at end of file diff --git a/workflow/envs/bash.yml b/workflow/envs/bash.yml new file mode 100644 index 0000000..f2957f3 --- /dev/null +++ b/workflow/envs/bash.yml @@ -0,0 +1,23 @@ +############################################################################### +# +# Software to be installed in the environment +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 29-06-2020 +# LICENSE: Apache_2.0 +# +############################################################################### +--- + + name: bash-4-4-18 + + channels: + - conda-forge + + dependencies: + - bash=4.4.18 + +... diff --git a/workflow/envs/combine-motevo-results.yml b/workflow/envs/combine-motevo-results.yml new file mode 100644 index 0000000..6759e73 --- /dev/null +++ b/workflow/envs/combine-motevo-results.yml @@ -0,0 +1,24 @@ +############################################################################### +# +# Software to be installed in the environment +# +# AUTHOR: Krish Agarwal +# AFFILIATION: University_of_Basel +# CONTACT: akrish136@gmail.com +# CREATED: 17-07-2020 +# LICENSE: Apache_2.0 +# +############################################################################### +--- + + name: combine-motevo-results + + channels: + - conda-forge + + dependencies: + - bash=4.4.18 + - pandas=1.0.1 + - python=3.7.4 + +... diff --git a/workflow/envs/motevo.yml b/workflow/envs/motevo.yml new file mode 100644 index 0000000..42757de --- /dev/null +++ b/workflow/envs/motevo.yml @@ -0,0 +1,23 @@ +############################################################################### +# +# Software to be installed in the environment +# +# AUTHOR: Maciej_Bak +# AFFILIATION: University_of_Basel +# AFFILIATION: Swiss_Institute_of_Bioinformatics +# CONTACT: maciej.bak@unibas.ch +# CREATED: 29-06-2020 +# LICENSE: Apache_2.0 +# +############################################################################### +--- + + name: motevo + + channels: + - vng + + dependencies: + - motevo=1.12 + +... diff --git a/workflow/envs/plot_heatmap_of_MotEvo_results.yml b/workflow/envs/plot_heatmap_of_MotEvo_results.yml new file mode 100644 index 0000000..954cf59 --- /dev/null +++ b/workflow/envs/plot_heatmap_of_MotEvo_results.yml @@ -0,0 +1,28 @@ +############################################################################### +# +# Software to be installed in the environment +# +# AUTHOR: Krish Agarwal +# AFFILIATION: University_of_Basel +# CONTACT: akrish136@gmail.com +# CREATED: 28-07-2020 +# LICENSE: Apache_2.0 +# +############################################################################### +--- + + name: plot_heatmap_of_MotEvo_results + + channels: + - conda-forge + - r + + dependencies: + - bash=4.4.18 + - r=4.0 + - r-ggplot2=3.3.2 + - r-optparse=1.6.6 + - r-svglite=1.2.3.2 + - r-ggtext=0.1.0 + +... diff --git a/workflow/envs/plot_sequence_logos.yml b/workflow/envs/plot_sequence_logos.yml new file mode 100644 index 0000000..01f79bd --- /dev/null +++ b/workflow/envs/plot_sequence_logos.yml @@ -0,0 +1,24 @@ +############################################################################### +# +# Software to be installed in the environment +# +# AUTHOR: Krish Agarwal +# AFFILIATION: University_of_Basel +# CONTACT: akrish136@gmail.com +# CREATED: 02-08-2020 +# LICENSE: Apache_2.0 +# +############################################################################### +--- + + name: plot_sequence_logos + + channels: + - conda-forge + - bioconda + + dependencies: + - python=3.7.4 + - logomaker=0.8 + - matplotlib=3.3.0 +... \ No newline at end of file diff --git a/workflow/scripts/combine-motevo-results.py b/workflow/scripts/combine-motevo-results.py new file mode 100644 index 0000000..cc9817b --- /dev/null +++ b/workflow/scripts/combine-motevo-results.py @@ -0,0 +1,126 @@ +############################################################################## +# AUTHOR: Krish Agarwal +# AFFILIATION: University_of_Basel +# CONTACT: akrish136@gmail.com +# CREATED: 14-07-2020 +# LICENSE: Apache_2.0 +############################################################################## + +##### Importing necessary libraries ##### +import os +import sys +import pandas as pd +import csv +from argparse import ArgumentParser, RawTextHelpFormatter + +##### Using argparse to get input from command line ##### +parser = ArgumentParser(description=__doc__, formatter_class=RawTextHelpFormatter) + +parser.add_argument( + "--input_directories", + nargs="+", + dest="input_directories", + help="input directory for the script to search", + required=True, + metavar="DIR", +) + +parser.add_argument( + "--filename", + dest="filename", + help="filename to be searched in input_directories", + required=True, + metavar="NAME", +) + +parser.add_argument( + "--outfile", + dest="outfile", + help="location and name of the tsv file", + required=True, + metavar="FILE", +) + +try: + options = parser.parse_args() +except Exception: + parser.print_help() + +if len(sys.argv) == 1: + parser.print_help() + sys.exit(1) + +##### Initializing dictionaries and list ##### +tabb = dict() +tabb["strand"] = [] +tabb["binding_position"] = [] +tabb["binding_posterior"] = [] +tabb["pwm_id"] = [] +tabb["binding_region"] = [] +tabb["binding_sequence"] = [] +tabb["binding_energy"] = [] +tabb["fasta_record"] = [] + +##### Taking input from commandline ##### +filenameparam = str(options.filename) +dirrs = options.input_directories +outdir = str(options.outfile) + +##### Sorting the input directories so as to prevent different orders for same input ##### +dirrs = sorted(dirrs) + +rel_outfile = os.path.relpath(outdir) + +##### Processing each directory one by one using a for loop ##### +for dirr in dirrs: + abs_path = os.path.join(dirr, filenameparam) # absolute path of the input file + + filename = os.path.relpath(abs_path) # relative path of input file + + i = 0 # this variable will be used to check whether we are at the first line of the record or second + + file = open(filename, "r") # open the file in read mode + + for each in file: # processing the file line by line + + each_word = each.split(" ") # splitting the line into individual words + + if i % 2 == 0: # if i is even then we are at the first line + + ##### Appending values ##### + tabb["binding_position"] = tabb["binding_position"] + [each_word[0]] + tabb["strand"] = tabb["strand"] + [each_word[1]] + tabb["binding_posterior"] = tabb["binding_posterior"] + [each_word[2]] + tabb["pwm_id"] = tabb["pwm_id"] + [each_word[3]] + tabb["binding_region"] = tabb["binding_region"] + [each_word[4]] + + else: # if i is odd then we are at the second line + + ##### Appending values ##### + tabb["binding_sequence"] = tabb["binding_sequence"] + [each_word[0]] + tabb["binding_energy"] = tabb["binding_energy"] + [each_word[1]] + tabb["fasta_record"] = tabb["fasta_record"] + [each_word[2]] + + i = i + 1 # increment the value of i after we are done processing each line + +list_items = [ + "pwm_id", + "binding_position", + "binding_sequence", + "binding_posterior", + "binding_energy", +] # these will be the headers in the final tsv file + +tempDict1 = ( + {} +) # initializing empty dictionary that will contain data only of the headers mentioned in list_items + +for item in list_items: + + tempDict = {item: pd.Series(tabb[item])} # appending list of values for each key + tempDict1.update(tempDict) # concating dictionary + +df = pd.DataFrame(tempDict1) # convert dictionary to dataframe +df = df.sort_values(by=['binding_posterior'], ascending=False) # sort values according to binding posterior in descending + +df.to_csv(rel_outfile, index=False, sep="\t", header=list_items) # creating a tsv file diff --git a/workflow/scripts/heatmap.r b/workflow/scripts/heatmap.r new file mode 100644 index 0000000..ec5f2e9 --- /dev/null +++ b/workflow/scripts/heatmap.r @@ -0,0 +1,159 @@ +############################################################################### +# +# R script to generate a heatmap +# +# AUTHOR: Krish Agarwal +# AFFILIATION: University_of_Basel +# CONTACT: akrish136@gmail.com +# CREATED: 23-07-2020 +# LICENSE: Apache_2.0 +# +############################################################################### + +# by default: suppress warnings +options(warn = -1) + +# load libraries +library("optparse") +library(ggplot2) +library(ggtext) + + +# list the command-line arguments +option_list <- list( + make_option(c("--input_tsv"), + action = "store", + dest = "input_tsv", + type = "character", + help = "location and name of the tsv file" + ), + make_option(c("--input_sequence"), + action = "store", + dest = "input_sequence", + type = "character", + help = "full input_sequence" + ), + make_option(c("--outfile"), + action = "store", + dest = "output_tsv", + type = "character", + help = "location and name of output heatmap" + ), + make_option(c("--sequence_logos_directory"), + action = "store", + dest = "sequence_logos_directory", + type = "character", + default=FALSE, + help = "location of directory of sequence logos" + ) +) +# parse command-line arguments +opt_parser <- OptionParser( + usage = "Usage: %prog [OPTIONS] --message [STRING]", + option_list = option_list, + add_help_option = FALSE, + description = "" +) +opt <- parse_args(opt_parser) + +# Storing command line arguments in variables +input_sequence <- opt$input_sequence +input_tsv <- opt$input_tsv +output_tsv <- opt$output_tsv +sequence_logos_directory <- opt$sequence_logos_directory + +input_sequence <- gsub("T", "U", input_sequence) # Replace all T with U in input sequence + +# This will be the hidden column names for the graph +x_axis_numbers = 1:nchar(input_sequence) + +file = file(input_tsv, "r") + +y_axis_labels = c() + +while (length(line <- readLines(file, n = 1)) > 0) # Read the file line by line +{ + words = strsplit(line, '\t') + pwm_id = words[[1]][1] + if(is.element(pwm_id, y_axis_labels) == FALSE && pwm_id != "pwm_id") + { + y_axis_labels <- c(y_axis_labels, pwm_id) + } +} +uniform_data = matrix(as.double("0.00"), length(y_axis_labels), length(x_axis_numbers)) + +close(file) + +file = file(input_tsv, "r") + +while (length(line <- readLines(file, n = 1)) > 0) +{ + words = strsplit(line, '\t') + pwm_id = words[[1]][1] + bind_pos = words[[1]][2] + bind_prob = words[[1]][4] + if(bind_pos != 'binding_position') + { + bind_combined = strsplit(bind_pos, '-') # splitting to get the starting and the last position of binding + bind_start = bind_combined[[1]][1] + bind_end = bind_combined[[1]][2] + + for(i in as.integer(bind_start):as.integer(bind_end)) + { + gg = grep(pwm_id, y_axis_labels) + uniform_data[gg, i] <- as.double(bind_prob) ## adding the probability to each position + } + } +} +uniform_data[uniform_data == 0] <- NA + +colnames(uniform_data) <- x_axis_numbers +rownames(uniform_data) <- y_axis_labels + +# Converting matrix to data frame +dff <-data.frame(col = rep(colnames(uniform_data), each = nrow(uniform_data)), + row = rep(rownames(uniform_data), ncol(uniform_data)), + Binding_Probability = as.vector(uniform_data)) + +input_seq = strsplit(input_sequence,"") + +labels = c() + +#### Add the sequence logo pngs to the dictionary #### +if(sequence_logos_directory != FALSE) +{ + for (label in y_axis_labels) + { + labels[label] = paste("", label, "", sep = "") + } +} + + +if(sequence_logos_directory != FALSE) +{ + a <- ggplot(dff, aes(x = reorder(col, sort(as.numeric(col))), y = row, fill= Binding_Probability)) + + geom_tile(color = "gray") + + scale_x_discrete(breaks=1:nchar(input_sequence),labels=input_seq) + + scale_y_discrete(name = NULL, labels=labels) + + scale_fill_gradientn(colours=c("white","orange","red","dark red"), limits=c(0,1), na.value="white") + # Sets default NA colour and scale + labs(x ="Sequence", y = "") + # Name of the x and y axis + theme_classic()+ + theme( + axis.text.y = element_markdown(color = "black", size = 11) + )+ + coord_fixed(3) + #coord_equal() #make the grid squares and independent of number of motifs analyzed +} else +{ + a <- ggplot(dff, aes(x = reorder(col, sort(as.numeric(col))), y = row, fill= Binding_Probability)) + + geom_tile(color = "gray") + + scale_x_discrete(breaks=1:nchar(input_sequence),labels=input_seq) + + scale_fill_gradientn(colours=c("white","orange","red","dark red"), limits=c(0,1), na.value="white") + # Sets default NA colour and scale + labs(x ="Sequence", y = "") + # Name of the x and y axis + theme_classic()+ + coord_fixed(3) + #coord_equal() #make the grid squares and independent of number of motifs analyzed +} + +ggsave(output_tsv, width=ceiling(nchar(input_sequence)/4)+10, height = ceiling(length(y_axis_labels))+10, limitsize = FALSE) diff --git a/workflow/scripts/sequence_logos.py b/workflow/scripts/sequence_logos.py new file mode 100644 index 0000000..70d75e5 --- /dev/null +++ b/workflow/scripts/sequence_logos.py @@ -0,0 +1,122 @@ +############################################################################### +# +# Script to plot sequence logos for motifs +# +# AUTHOR: Krish Agarwal +# AFFILIATION: University_of_Basel +# CONTACT: akrish136@gmail.com +# CREATED: 02-08-2020 +# LICENSE: Apache_2.0 +# +############################################################################### + +import pandas as pd +import matplotlib.pyplot as plt +import sys +import os +import logomaker +from argparse import ArgumentParser, RawTextHelpFormatter + +##### Using argparse to get input from command line ##### +parser = ArgumentParser(description=__doc__, formatter_class=RawTextHelpFormatter) + +parser.add_argument( + "--input_file", + dest="input_file", + help="input files for sequence logos", + required=True, + metavar="FILE", +) + +parser.add_argument( + "--output_location", + dest="output_location", + help="location where the png logos will be saved", + required=True, + metavar="DIR", +) + +try: + options = parser.parse_args() +except Exception: + parser.print_help() + +if len(sys.argv) == 1: + parser.print_help() + sys.exit(1) + +#### Storing commnad line arguments in variables #### +input_file = options.input_file +output_location = options.output_location + + +main_file = str(input_file) +main_file_temp = ( + main_file + "_temp" +) # create a temporary file which will store only the required data +main_file_temp2 = ( + main_file + "_temp2" +) + +filename = os.path.split(main_file)[-1] # filename of the input file + +#### Calculate total number of lines in the file #### +j = 0 +with open(main_file) as f: + for line in f: + j = j + 1 + +#### Copy the contents of the file to temp except 1st, 2nd and last line #### +i = 0 +with open(main_file) as f: + with open(main_file_temp, "w") as f1: + for line in f: + if i != 0 and i != 1 and i != j - 1: + f1.write(line) + i = i + 1 + +#### Logic to replace T with U in temp file #### +fin = open(main_file_temp, "rt") +fout = open(main_file_temp2, "wt") + +i=0 +for line in fin: + words = line.split() + if(i!=0 and float(words[1]) == float(words[4]) == float(words[2]) == float(words[3]) == 25.0): + line = words[0] + "\t25.0\t25.0\t25.01\t24.99\n" + fout.write(line.replace('T', 'U')) + i = i+1 + +fin.close() +fout.close() + +crp_matrix_df = pd.read_csv( + main_file_temp2, delim_whitespace=True, index_col=0 +) # read csv and convert to dataframe +crp_matrix_df.head() + +#### Delete the temporary files #### +os.remove(main_file_temp) +os.remove(main_file_temp2) + +prob_mat = logomaker.transform_matrix( + crp_matrix_df, from_type="probability", to_type="information" +) +logo = logomaker.Logo( + prob_mat, + fade_probabilities=True, ## will fade the smaller probabilities + stack_order="small_on_top", +) + +final_png = os.path.join(output_location, filename) # location for saving the file +final_png = final_png + ".png" + +axes = plt.gca() # get current axes of the plots +axes.set_ylim([0, 2]) # set the y-axis limits from 0 to 2 + +#### Hide the top and the right axes of the plot #### +axes.spines['right'].set_color('none') +axes.spines['top'].set_color('none') +axes.spines['left'].set_color('none') + +plt.savefig(final_png) # final png saved