From 5083cd8a171f920e2ca7095417de772c8ef4d9a3 Mon Sep 17 00:00:00 2001 From: Alex Kanitz Date: Thu, 1 Feb 2024 04:59:37 +0100 Subject: [PATCH] update Biocontainers image tag as well --- workflow/rules/paired_end.snakefile.smk | 2 +- workflow/rules/single_end.snakefile.smk | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/workflow/rules/paired_end.snakefile.smk b/workflow/rules/paired_end.snakefile.smk index 2521c49..cbc2b1a 100644 --- a/workflow/rules/paired_end.snakefile.smk +++ b/workflow/rules/paired_end.snakefile.smk @@ -64,7 +64,7 @@ rule pe_remove_adapters_cutadapt: ), ), container: - "docker://quay.io/biocontainers/cutadapt:3.4--py37h73a75cf_1" + "docker://quay.io/biocontainers/cutadapt:4.6--py310h4b81fae_1" conda: os.path.join(workflow.basedir, "envs", "cutadapt.yaml") threads: 4 diff --git a/workflow/rules/single_end.snakefile.smk b/workflow/rules/single_end.snakefile.smk index 0f25f6c..57e13b5 100644 --- a/workflow/rules/single_end.snakefile.smk +++ b/workflow/rules/single_end.snakefile.smk @@ -112,7 +112,7 @@ rule remove_polya_cutadapt: ), ), container: - "docker://quay.io/biocontainers/cutadapt:3.4--py37h73a75cf_1" + "docker://quay.io/biocontainers/cutadapt:4.6--py310h4b81fae_1" conda: os.path.join(workflow.basedir, "envs", "cutadapt.yaml") threads: 4