adjust output directories - annotations now go in 'annotations' subdi…

…rectory of job dir
3dem · May 5, 2023 · 02d7954 · 02d7954
1 parent 8cc8bd7
commit 02d7954
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/src/tomography_python_programs/pick/filaments.py b/src/tomography_python_programs/pick/filaments.py
@@ -83,7 +83,7 @@ def synchronise_annotator(self):
     @property
     def current_particle_star_file(self) -> Path:
         tilt_series_id = self.tomogram_browser_widget.selected_tilt_series.name
-        return self.output_directory / f'{tilt_series_id}_filaments.star'
+        return self.output_directory / 'annotations' / f'{tilt_series_id}_filaments.star'
 
     def save_particles(self):
         paths = N3dPaths.from_layer(self.points_layer)

diff --git a/src/tomography_python_programs/pick/particles.py b/src/tomography_python_programs/pick/particles.py
@@ -85,7 +85,7 @@ def synchronise_annotator(self):
     @property
     def current_particle_star_file(self) -> Path:
         tilt_series_id = self.tomogram_browser_widget.selected_tilt_series.name
-        return self.output_directory / f'{tilt_series_id}_particles.star'
+        return self.output_directory / 'annotations' / f'{tilt_series_id}_particles.star'
 
     def save_particles(self):
         zyx = self.points_layer.data

diff --git a/src/tomography_python_programs/pick/spheres.py b/src/tomography_python_programs/pick/spheres.py
@@ -82,7 +82,7 @@ def synchronise_annotator(self):
     @property
     def current_particle_star_file(self) -> Path:
         tilt_series_id = self.tomogram_browser_widget.selected_tilt_series.name
-        return self.output_directory / f'{tilt_series_id}_spheres.star'
+        return self.output_directory / 'annotations' / f'{tilt_series_id}_spheres.star'
 
     def save_particles(self):
         spheres = N3dSpheres.from_layer(self.points_layer)