RELION 4.0.1

3dem · Mar 6, 2023 · 4a801d6 · 4a801d6
1 parent 8b8e443
commit 4a801d6
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Showing 3 changed files with 6 additions and 3 deletions.
diff --git a/src/image.h b/src/image.h
@@ -1616,7 +1616,8 @@ class CompressedMRCReader
 
 	static bool isCompressedMRC(FileName filename)
 	{
-		return filename.endsWith(".mrc.bz2") || filename.endsWith(".mrc.xz") || filename.endsWith(".mrc.zst");
+		return filename.endsWith(".mrc.bz2") || filename.endsWith(".mrc.xz") || filename.endsWith(".mrc.zst")
+		    || filename.endsWith(".mrcs.bz2") || filename.endsWith(".mrcs.xz") || filename.endsWith(".mrcs.zst");
 	}
 
 	void skip(size_t byte)

diff --git a/src/macros.h b/src/macros.h
@@ -45,7 +45,7 @@
 #ifndef MACROS_H
 #define MACROS_H
 
-#define RELION_SHORT_VERSION "4.0.0"
+#define RELION_SHORT_VERSION "4.0.1"
 extern const char *g_RELION_VERSION;
 
 #include <math.h>

diff --git a/src/pipeline_jobs.cpp b/src/pipeline_jobs.cpp
@@ -1142,7 +1142,9 @@ void RelionJob::initialiseImportJob()
 	hidden_name = ".gui_import";
 
 	joboptions["do_raw"] = JobOption("Import raw movies/micrographs?", true, "Set this to Yes if you plan to import raw movies or micrographs");
-	joboptions["fn_in_raw"] = JobOption("Raw input files:", "Micrographs/*.tif", (std::string)"Movie or Image (*.{mrc,mrcs,tif,tiff,eer,mrc.bz2})", ".", "Provide a Linux wildcard that selects all raw movies or micrographs to be imported. The path must be a relative path from the project directory. To import files outside the project directory, first make a symbolic link by an absolute path and then specify the link by a relative path. See the FAQ page on RELION wiki (https://www3.mrc-lmb.cam.ac.uk/relion/index.php/FAQs#What_is_the_right_way_to_import_files_outside_the_project_directory.3F) for details.");
+	joboptions["fn_in_raw"] = JobOption("Raw input files:", "Micrographs/*.tif", (std::string)"Movie or Image (*.{mrc,mrcs,tif,tiff,eer,mrc.bz2,mrcs.bz2,mrc.zst,mrcs.zst,mrc.xz,mrcs.xz})", ".", "Provide a Linux wildcard that selects all raw movies or micrographs to be imported. The path must be a relative path from the project directory. To import files outside the project directory, first make a symbolic link by an absolute path and then specify the link by a relative path. See the FAQ page on RELION wiki (https://www3.mrc-lmb.cam.ac.uk/relion/index.php/FAQs#What_is_the_right_way_to_import_files_outside_the_project_directory.3F) for details.\
+\
+To process compressed MRC movies, you need pbzip2, zstd and xz command in your PATH for bzip2, Zstandard and xzip compression, respectively.");
 	joboptions["is_multiframe"] = JobOption("Are these multi-frame movies?", true, "Set to Yes for multi-frame movies, set to No for single-frame micrographs.");
 
 	joboptions["optics_group_name"] = JobOption("Optics group name:", (std::string)"opticsGroup1", "Name of this optics group. Each group of movies/micrographs with different optics characteristics for CTF refinement should have a unique name.");