Ajs fix bugs

[aschroed]

Fixed bugs in 3 different checks:

1. in check that looks for reciprocal and complete relationships for the 'grouped with' relationship type the formation of groups was somewhat relationship type agnostic so there were paired fastq files that should not get the grouped with relationship added to groups if other files linked to the pair had that relationship - eg. index reads or barcodes. Added a filter to avoid this incorrect grouping
2. entrez_gene_id validation would throw and exception if there was no response at all from the ncbi request so added a check to make sure that if that was the case it would be dealt with gracefully
3. SPIN state files get a tag and higlass_defaults for color a multivec added - the check that dealt with finding files that needed this info updated was very wonky so this PR refactors that code.

[RahiNav]

Hi, the local tests for grouped_with_file_relation_consistency and validate_entrez_geneids came back as expected.
For the grouped_with check: {
"name": "grouped_with_file_relation_consistency",
"summary": "All 'grouped with' file relationships are consistent",
"description": "All 'grouped with' file relationships are consistent",
"status": "PASS",......}
For gene_id check:{
"name": "validate_entrez_geneids",
"summary": "",
"description": "GENE IDs are all valid",
"status": "PASS",.....}