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COmmit to delete for prerelease deployment
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,205 @@ | ||
| name: Deploy development environment (workflow to delete) | ||
| on: | ||
| pull_request: | ||
| env: | ||
| ENV_NAME: env-dev.yml | ||
| VERSION: dev | ||
| DEPENDENCY_REPOS: replace_landsurface era5_grib_parallel | ||
| ARCH: noarch | ||
| CHANNEL_SUFFIX: _channel | ||
| concurrency: | ||
| # Since there is only one development conda environmnent deployed at a time, | ||
| # we can cancel the previous deployment if a new one is triggered. | ||
| group: deploy-development | ||
| cancel-in-progress: true | ||
|
|
||
| jobs: | ||
| get-deployment-sites: | ||
| name: Get Deployment Sites | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| deployment-sites: ${{ steps.get-deployment-sites.outputs.deployment-sites }} | ||
| steps: | ||
| - name: Checkout config | ||
| uses: actions/checkout@v4 | ||
|
|
||
| - name: Get sites | ||
| id: get-deployment-sites | ||
| run: echo "deployment-sites=$(jq --compact-output '.sites' ./config/deployment-sites.json)" >> $GITHUB_OUTPUT | ||
|
|
||
| pack: | ||
| name: Pack environment | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| full-name: ${{ steps.get-env-name.outputs.full-name }} | ||
| dependency-names: ${{ steps.get-dependencies.outputs.dependency-names }} | ||
| pr-numbers: ${{ steps.get-dependencies.outputs.pr-numbers }} | ||
| env: | ||
| GH_TOKEN: ${{ github.token }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
|
|
||
| - name: Get environment name | ||
| id: get-env-name | ||
| run: echo "full-name=$(yq '.name' < ${{env.ENV_NAME}})-${{env.VERSION}}" >> $GITHUB_OUTPUT | ||
|
|
||
| # Search for the latest open PR (not a draft) in the replace_landsurface and era5_grib_parallel repos with | ||
| # changes in specific files. If a PR is found, download the artifact from the PR latest | ||
| # (successful) workflow run. If a PR is not found, download the lates released version. | ||
| - name: Get latest dependencies | ||
| id: get-dependencies | ||
| run: | | ||
| download_latest_release() { | ||
| gh release download $(gh release view --repo ${{ github.repository_owner }}/$1 --json tagName --jq '.tagName') \ | ||
| --repo ${{ github.repository_owner }}/$1 --pattern *.tar.bz2 -D ${1}${{env.CHANNEL_SUFFIX}}/${{env.ARCH}} | ||
| if [ $? -eq 0 ]; then | ||
| echo "${1}: Successfully downloaded latest release: \"$(basename ${1}${{env.CHANNEL_SUFFIX}}/${{env.ARCH}}/*.tar.bz2)\"." | ||
| fi | ||
| } | ||
| download_run_artifact() { | ||
| if gh run download $run_id --repo ${{ github.repository_owner }}/$1 -D ${1}${{env.CHANNEL_SUFFIX}}/${{env.ARCH}}; then | ||
| echo "${1}: Successfully downloaded artifact \"$(basename ${1}${{env.CHANNEL_SUFFIX}}/${{env.ARCH}}/artifact/*.tar.bz2)\"." | ||
| mv ${1}${{env.CHANNEL_SUFFIX}}/${{env.ARCH}}/artifact/*.tar.bz2 ${1}${{env.CHANNEL_SUFFIX}}/${{env.ARCH}} | ||
| else | ||
| echo "${1}: No valid artifact found. Dependency will be installed from the latest release." | ||
| download_latest_release ${1} | ||
| fi | ||
| } | ||
| for dependency_repo in ${{env.DEPENDENCY_REPOS}}; do | ||
| echo "Getting latest \"${dependency_repo}\" dependency ..." | ||
| # Get sha and number of latest open PR that changes either of the following files: | ||
| # [src/**, setup.py, pyproject.toml, .conda/**] | ||
| pr=$(gh pr list --repo ${{ github.repository_owner }}/${dependency_repo} --state open --draft=False \ | ||
| --json headRefOid,files,number,url \ | ||
| --jq '.[] | select(.files[].path | | ||
| (startswith("src/") or (. == "setup.py") or (. == "pyproject.toml") or (startswith(".conda/"))))' \ | ||
| | head -n 1) | ||
|
|
||
| # if a PR is found, find the ID of the latest successful workflow run | ||
| if [[ -n "$pr" ]]; then | ||
| pr_sha=$(jq -r '.headRefOid' <<< $pr) | ||
| pr_number=$(jq '.number' <<< $pr) | ||
| pr_numbers+=($pr_number) | ||
| pr_url=$(jq -r '.url' <<< $pr) | ||
| echo "${dependency_repo}: Found PR #${pr_number}." | ||
| echo " PR url: $pr_url" | ||
| echo " Commit ref: $pr_sha" | ||
|
|
||
| run=$(gh run list --repo ${{ github.repository_owner }}/${dependency_repo} \ | ||
| --json databaseId,headSha,event,status,url \ | ||
| --jq ".[] | select(.event == \"pull_request\" and .status == \"completed\" and .headSha == \"$pr_sha\")"\ | ||
| | head -n 1) | ||
|
|
||
| # if a successful workflow run is found, download its artifact | ||
| if [[ -n "$run" ]]; then | ||
| run_id=$(jq '.databaseId' <<< $run) | ||
| run_url=$(jq -r '.url' <<< $run) | ||
| echo "${dependency_repo}: Found successful workflow run for the PR." | ||
| echo " Run ID: $run_id" | ||
| echo " Run url: $run_url" | ||
|
|
||
| download_run_artifact ${dependency_repo} | ||
| else | ||
| echo "${dependency_repo}: No successful workflow run found. Dependency will be installed from the latest release." | ||
| download_latest_release ${dependency_repo} | ||
| fi | ||
| else | ||
| echo "${dependency_repo}: No useful open PR found. Dependency will be installed from the latest release." | ||
| download_latest_release ${dependency_repo} | ||
| fi | ||
| # Get the dependency name as text after "name = " in the "content" field of the pyproject.toml file | ||
| dependency_names+=($(gh api repos/${{github.repository_owner}}/${dependency_repo}/contents/pyproject.toml --jq '.content' | \ | ||
| base64 --decode | grep -Po "^name\s*=\s*\K(.*)" | tr -d '"')) | ||
| ls -l ${dependency_repo}${{env.CHANNEL_SUFFIX}}/${{env.ARCH}} | ||
| done | ||
| echo "dependency-names=${dependency_names[@]}" >> $GITHUB_OUTPUT | ||
| echo "pr-numbers=$(sed 's/ /,/' <<< [${pr_numbers[@]}])" >> $GITHUB_OUTPUT | ||
|
|
||
| - name: Setup Micromamba | ||
| uses: mamba-org/setup-micromamba@f8b8a1e23a26f60a44c853292711bacfd3eac822 #v1.9.0 | ||
| with: | ||
| micromamba-version: '1.5.8-0' | ||
| environment-file: ${{env.ENV_NAME}} | ||
| environment-name: ${{ steps.get-env-name.outputs.full-name }} | ||
| generate-run-shell: true | ||
|
|
||
| # This step is needed to install local conda packages along with their dependencies (https://stackoverflow.com/a/68131606/21024780) | ||
| - name: Create conda channels | ||
| shell: micromamba-shell {0} | ||
| run: | | ||
| for dependency_repo in ${{env.DEPENDENCY_REPOS}}; do | ||
| cmd="conda index ${dependency_repo}${{env.CHANNEL_SUFFIX}}" | ||
| echo "$cmd" | ||
| eval "$cmd" | ||
| done | ||
| - name: Install dependencies | ||
| shell: micromamba-shell {0} | ||
| run: | | ||
| cmd="micromamba install ${{steps.get-dependencies.outputs.dependency-names}} | ||
| -c conda-forge -c accessnri -c coecms $(for dependency_repo in ${{env.DEPENDENCY_REPOS}}; do | ||
| echo -n "-c file://${{github.workspace}}/${dependency_repo}${{env.CHANNEL_SUFFIX}} "; done)" -y | ||
| echo "$cmd" | ||
| eval "$cmd" | ||
| - name: Create Pack | ||
| shell: micromamba-shell {0} | ||
| run: | | ||
| conda pack -o ${{ steps.get-env-name.outputs.full-name }}.tar.gz | ||
| - name: Upload Artifact | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: ${{ steps.get-env-name.outputs.full-name }} | ||
| if-no-files-found: error | ||
| path: ${{ steps.get-env-name.outputs.full-name }}.tar.gz | ||
|
|
||
| deploy: | ||
| runs-on: ubuntu-latest | ||
| needs: | ||
| - get-deployment-sites | ||
| - pack | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| deployment-sites: ${{ fromJson(needs.get-deployment-sites.outputs.deployment-sites) }} | ||
| environment: ${{ matrix.deployment-sites }} | ||
| permissions: | ||
| contents: write | ||
| steps: | ||
| - uses: actions/download-artifact@v4 | ||
| with: | ||
| name: ${{ needs.pack.outputs.full-name }} | ||
|
|
||
| - name: Set up SSH | ||
| uses: access-nri/actions/.github/actions/setup-ssh@main | ||
| id: ssh | ||
| with: | ||
| hosts: | | ||
| ${{ secrets.HOST_DATA }} | ||
| ${{ secrets.HOST }} | ||
| private-key: ${{ secrets.SSH_KEY }} | ||
|
|
||
| - name: Copy to ${{ matrix.deployment-sites }} | ||
| run: | | ||
| rsync -v -e 'ssh -i ${{ steps.ssh.outputs.private-key-path }}' \ | ||
| ${{ needs.pack.outputs.full-name }}.tar.gz \ | ||
| ${{ secrets.USER }}@${{ secrets.HOST_DATA }}:${{ vars.PACK_DIR }} | ||
| - name: Deploy to ${{ matrix.deployment-sites }} | ||
| env: | ||
| DEPLOYMENT_DIR: ${{ vars.ENVIRONMENT_DIR }}/${{ env.VERSION }} | ||
| run: | | ||
| ssh ${{ secrets.USER }}@${{ secrets.HOST }} -i ${{ steps.ssh.outputs.private-key-path }} /bin/bash <<'EOT' | ||
| mkdir -p ${{ env.DEPLOYMENT_DIR }} | ||
| tar -xzf ${{ vars.PACK_DIR }}/${{ needs.pack.outputs.full-name }}.tar.gz -C ${{ env.DEPLOYMENT_DIR }} | ||
| source ${{ env.DEPLOYMENT_DIR }}/bin/activate | ||
| conda-unpack | ||
| source ${{ env.DEPLOYMENT_DIR }}/bin/deactivate | ||
| ln -sf ${{ vars.MODULE_DIR }}/.common ${{ vars.MODULE_DIR }}/${{ env.VERSION }} | ||
| EOT |
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