Update conda environments, conda package recipe and documentation #174
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| # Run CI tests | |
| name: CI | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: main | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| env: | |
| PY_VERSION: "3.11" | |
| jobs: | |
| # JOB to run change in the build files | |
| changes: | |
| runs-on: ubuntu-latest | |
| # Required permissions | |
| permissions: | |
| pull-requests: read | |
| # Set job outputs to values from filter step | |
| outputs: | |
| files: ${{ steps.filter.outputs.files }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/[email protected] | |
| - name: Filter files | |
| uses: dorny/paths-filter@de90cc6fb38fc0963ad72b210f1f284cd68cea36 #v3.0.2 | |
| id: filter | |
| with: | |
| filters: | | |
| files: | |
| - 'setup.py' | |
| - 'pyproject.toml' | |
| - '.conda/env_build.yml' | |
| - '.conda/meta.yml' | |
| verify-conda-build: | |
| name: Conda Build | |
| runs-on: ubuntu-latest | |
| needs: changes | |
| # Only run if there are changes in the build files | |
| if: ${{ needs.changes.outputs.files == 'true' }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup conda build environment | |
| uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca # v3.0.4 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: ${{ env.PY_VERSION }} | |
| environment-file: .conda/env_build.yml | |
| auto-activate-base: false | |
| auto-update-conda: false | |
| show-channel-urls: true | |
| - name: Verify conda recipe | |
| shell: bash -el {0} | |
| run: conda-verify .conda --ignore C2105,C2122 | |
| - name: Run conda build | |
| shell: bash -el {0} | |
| run: conda build . --no-anaconda-upload --output-folder=./build -c conda-forge -c accessnri -c coecms | |
| - name: Verify conda package | |
| shell: bash -el {0} | |
| run: conda-verify ./build/noarch/*.tar.bz2 --ignore C1105,C1115,C1141 | |
| tests: | |
| name: Tests | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/[email protected] | |
| - name: Setup conda environment | |
| uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca # v3.0.4 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: .conda/env_dev.yml | |
| activate-environment: um2nc-dev | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| show-channel-urls: true | |
| - name: Install source | |
| shell: bash -l {0} | |
| run: python3 -m pip install --no-deps --no-build-isolation -e . | |
| - name: List installed packages | |
| shell: bash -l {0} | |
| run: conda list | |
| - name: Lint | |
| shell: bash -l {0} | |
| run: pylint --extension-pkg-whitelist=netCDF4 --ignored-modules=umpost -E umpost | |
| - name: Entrypoint test of driver script | |
| shell: bash -l {0} | |
| run: esm1p5_convert_nc --help | |
| - name: Entrypoint test of um2netcdf script | |
| shell: bash -l {0} | |
| run: um2nc --help | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: python -m pytest --cov=umpost --cov-report=html -s test | |
| # - name: Upload code coverage | |
| # # Only upload once for the installed version | |
| # if: ${{ matrix.python-version == env.PY_VERSION }} | |
| # uses: codecov/codecov-action@b9fd7d16f6d7d1b5d2bec1a2887e65ceed900238 #v4.6.0 | |
| # with: | |
| # token: ${{ secrets.codecov_token }} | |
| # files: ./coverage.xml |