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GHA: Fix actions for PRs from forks (#2219) #1658

GHA: Fix actions for PRs from forks (#2219)

GHA: Fix actions for PRs from forks (#2219) #1658

name: Python Tests
on:
push:
branches:
- develop
- master
pull_request:
branches:
- master
workflow_dispatch:
schedule:
- cron: '48 4 * * *'
jobs:
build:
name: Python Version Matrix
runs-on: ubuntu-22.04
continue-on-error: ${{ matrix.experimental }}
env:
AMICI_SKIP_CMAKE_TESTS: "TRUE"
AMICI_PARALLEL_COMPILE: ""
strategy:
fail-fast: false
matrix:
python-version: ['3.9', '3.10', '3.11']
experimental: [false]
steps:
- run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV
- run: echo "BNGPATH=${AMICI_DIR}/ThirdParty/BioNetGen-2.7.0" >> $GITHUB_ENV
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- uses: actions/checkout@v3
with:
fetch-depth: 20
- name: Install apt dependencies
uses: ./.github/actions/install-apt-dependencies
# install AMICI
- name: Build BNGL
run: scripts/buildBNGL.sh
- name: Install python package
run: scripts/installAmiciSource.sh
- name: Python tests
run: |
source build/venv/bin/activate \
&& pip3 install git+https://github.com/pysb/pysb \
&& python3 -m pytest --ignore-glob=*petab* \
--ignore-glob=*test_splines.py ${AMICI_DIR}/python/tests