Fix pysb branch (#2548)

Previous branch no longer exists. Now on master (pysb/pysb@8be8263).

.github/workflows/test_petab_test_suite.yml

@@ -79,7 +79,7 @@ jobs:
           source ./venv/bin/activate \
             && python3 -m pip uninstall -y petab \
             && python3 -m pip install git+https://github.com/petab-dev/libpetab-python.git@develop \
-            && python3 -m pip install git+https://github.com/FFroehlich/pysb@fix_pattern_matching \
+            && python3 -m pip install git+https://github.com/pysb/pysb@master \
             && python3 -m pip install sympy>=1.12.1
 
 

python/sdist/amici/petab/util.py

@@ -71,7 +71,7 @@ def get_states_in_condition_table(
             raise NotImplementedError(
                 "Requires https://github.com/pysb/pysb/pull/570. "
                 "To use this functionality, update pysb via "
-                "`pip install git+https://github.com/FFroehlich/pysb@fix_pattern_matching`"
+                "`pip install git+https://github.com/pysb/pysb@master`"
             )
 
         # expose model components as variables so we can evaluate patterns

scripts/installAmiciSource.sh

@@ -34,7 +34,7 @@ export PYTHON_EXECUTABLE="${AMICI_PATH}/venv/bin/python"
 
 python -m pip install --upgrade pip wheel
 python -m pip install --upgrade pip setuptools cmake_build_extension==0.6.0 numpy petab
-python -m pip install git+https://github.com/FFroehlich/pysb@fix_pattern_matching # pin to PR for SPM with compartments
+python -m pip install git+https://github.com/pysb/pysb@master # for SPM with compartments
 AMICI_BUILD_TEMP="${AMICI_PATH}/python/sdist/build/temp" \
   python -m pip install --verbose -e "${AMICI_PATH}/python/sdist[petab,test,vis]" --no-build-isolation
 deactivate