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Merge pull request #2210 from AMICI-dev/release_0.20.0
Release 0.20.0
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name: Install apt dependencies | ||
description: Install apt dependencies for the AMICI Python package | ||
runs: | ||
using: "composite" | ||
steps: | ||
- run: | | ||
sudo apt-get update \ | ||
&& sudo apt-get install -y \ | ||
g++ \ | ||
libatlas-base-dev \ | ||
libboost-chrono-dev \ | ||
libboost-math-dev \ | ||
libboost-serialization-dev \ | ||
libhdf5-serial-dev \ | ||
swig | ||
shell: bash |
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name: Set up AMICI C++ | ||
description: | | ||
Build the AMICI C++ interface and set things for for coverage analysis. | ||
(Currently ubuntu-only). | ||
runs: | ||
using: "composite" | ||
steps: | ||
# BioNetGen Path | ||
- run: echo "BNGPATH=${GITHUB_WORKSPACE}/ThirdParty/BioNetGen-2.7.0" >> $GITHUB_ENV | ||
shell: bash | ||
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# use all available cores | ||
- run: echo "AMICI_PARALLEL_COMPILE=" >> $GITHUB_ENV | ||
shell: bash | ||
|
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# enable coverage | ||
- run: echo "ENABLE_GCOV_COVERAGE=TRUE" >> $GITHUB_ENV | ||
shell: bash | ||
|
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- name: Set up Sonar tools | ||
uses: ./.github/actions/setup-sonar-tools | ||
|
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- name: Install apt dependencies | ||
uses: ./.github/actions/install-apt-dependencies | ||
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- name: Install additional apt dependencies | ||
run: | | ||
sudo apt-get update \ | ||
&& sudo apt-get install -y \ | ||
cmake \ | ||
python3-venv \ | ||
lcov | ||
shell: bash | ||
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- name: Build AMICI dependencies | ||
run: scripts/buildDependencies.sh | ||
shell: bash | ||
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- name: Build AMICI | ||
run: scripts/buildAmici.sh | ||
shell: bash | ||
env: | ||
CI_SONARCLOUD: "TRUE" |
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name: Set up doxygen | ||
description: | | ||
Download, build, and install doxygen. | ||
runs: | ||
using: "composite" | ||
steps: | ||
- name: Install apt dependencies for doxygen | ||
run: | | ||
sudo apt-get update \ | ||
&& sudo apt-get install -y \ | ||
bison \ | ||
ragel \ | ||
graphviz \ | ||
texlive-latex-extra | ||
shell: bash | ||
|
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- name: Download and build doxygen | ||
run: sudo scripts/downloadAndBuildDoxygen.sh | ||
shell: bash |
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name: Set up Sonar tools | ||
description: Download and install sonar-scanner and build-wrapper | ||
runs: | ||
using: "composite" | ||
steps: | ||
- run: echo "SONAR_SCANNER_VERSION=5.0.1.3006" >> $GITHUB_ENV | ||
shell: bash | ||
- run: echo "SONAR_SCANNER_HOME=${HOME}/.sonar/sonar-scanner-$SONAR_SCANNER_VERSION-linux" >> $GITHUB_ENV | ||
shell: bash | ||
- run: echo "SONAR_SCANNER_OPTS=-server" >> $GITHUB_ENV | ||
shell: bash | ||
- run: echo "${SONAR_SCANNER_HOME}/bin" >> $GITHUB_PATH | ||
shell: bash | ||
- run: echo "${HOME}/.sonar/build-wrapper-linux-x86" >> $GITHUB_PATH | ||
shell: bash | ||
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- name: Install sonarcloud tools | ||
run: | | ||
sudo apt-get install nodejs curl unzip \ | ||
&& curl --create-dirs -sSLo $HOME/.sonar/sonar-scanner.zip \ | ||
https://binaries.sonarsource.com/Distribution/sonar-scanner-cli/sonar-scanner-cli-$SONAR_SCANNER_VERSION-linux.zip \ | ||
&& unzip -o $HOME/.sonar/sonar-scanner.zip -d $HOME/.sonar/ \ | ||
&& curl --create-dirs -sSLo $HOME/.sonar/build-wrapper-linux-x86.zip \ | ||
https://sonarcloud.io/static/cpp/build-wrapper-linux-x86.zip \ | ||
&& unzip -o $HOME/.sonar/build-wrapper-linux-x86.zip -d $HOME/.sonar/ \ | ||
shell: bash |
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name: Set up SWIG | ||
description: | | ||
Download and build SWIG and set the SWIG environment variable to the path of | ||
the SWIG executable. | ||
inputs: | ||
swig_version: | ||
description: 'Swig version to build' | ||
required: false | ||
default: '4.1.1' | ||
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||
runs: | ||
using: "composite" | ||
steps: | ||
- name: Download and build SWIG | ||
run: scripts/downloadAndBuildSwig.sh | ||
shell: bash | ||
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- run: echo "SWIG=${AMICI_DIR}/ThirdParty/swig-${{ inputs.swig_version }}/install/bin/swig" >> $GITHUB_ENV | ||
shell: bash |
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