This repository is a collection of notebooks to annotate contigs from de novo assembly of mRNA reads from Total-RNA sequencing.
The available databases are:
- AromaDeg
- CARD
- MCycDB
- SCyDB
- NCBI AMR
- Plasticdb
- AnnoTree
We include some toy data to test whether the notebooks work as expected. This repository is still in progress, as it was intended for internal use.