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Adibvafa/README.md

🌸 Hello, I'm Adib! 🍁

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πŸ€– Machine Learning Engineer Β  | Β  🧠 Neuroscientist Β  | Β  🌐 Community Builder

Machine Learning at Vector Institute and University Health Network, Computer Science and Neuroscience student at the University of Toronto, ambitious to push the boundaries of developing Artificial Intelligence and understanding Biological Intelligence.



πŸš€ Featured Research

CodonTransformer Logo

CodonTransformer

Website GitHub Paper

Engineered a SOTA model to optimize DNA sequences for protein expreesion in 164 organisms, releasing the largest toolkit for codon optimization.

CodonTransformer Logo

MedRAX

Website GitHub Paper

Built the world's most advanced medical reasoning agent for chest x-ray interpretation, outperforming general purpose and medical trained models.

EHRMamba Logo

EHRMamba

Website GitHub Paper

Developed a state-of-the-art foundation model for Electronic Health Records, and Odyssey, the largest open-source library for full-stack EHR modeling.


πŸ’Ό Experience

🩺 Health AI

  • University Health Network (WangLab): Building medical reasoning agents for chest X-ray (Sep 2024 - Present)
  • Vector Institute: Developing multimodal medical LLMs and EHR foundation models (Jan 2024 - December 2024)
  • Broad Institute of MIT and Harvard: Researching safety and privacy of healthcare models (Aug 2024 - February 2024)
  • Mayo Clinic: Detecting cancer using contrastive learning of pathology & radiology images (Jul 2024 - October 2024)
  • BorealisAI: Generating radiology reports with medical language models (Mar 2024 - Aug 2024)

🧬 Computational Biology & Neuroscience

  • Vector Institute, UHN: Building biological reasoning models and state-of-the-art DNA foundation models (January 2025 - Present)
  • INSERM, France: Optimizing DNA sequences for protein expression (Jul 2023 - Sep 2024)
  • XAtoms - AI Lead: Developing novel photocatalytic structures to clean water (Oct 2024 - Present)
  • iGEM Toronto: Generating novel plasmids with antibacterial properties (Mar 2024 - October 2024)
  • UofT Machine Intelligence Team: Predicting protein function with AI, won 2nd prize in CUCAI 2024 (Aug 2023 - Jul 2024)
  • UofT Filion & Koyama Lab: Translating zebrafish brain activity to body movements (May 2023 - August 2023)

πŸš€ Leadership & Initiatives

  • GenAI Genesis: Organizing Canada's largest AI hackathon as founder & co-chair (Sep 2023 - Present)
  • Google Developer Student Club: Leading GDSC @ UTSC (Aug 2023 - Present)
  • International Biology Olympiad: Silver Medalist (2021)

πŸ›  Tech Stack

Python PyTorch TensorFlow Keras Scikit-Learn Pandas Numpy JAX Hugging Face OpenCV GCP AWS Azure Docker Git Linux Bash C++ Java SQL CUDA


πŸ“Š GitHub Stats

Adib's GitHub Stats Β  Β  Top Languages

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  1. bowang-lab/MedRAX bowang-lab/MedRAX Public

    MedRAX: Medical Reasoning Agent for Chest X-ray

    Python 446 91

  2. CodonTransformer CodonTransformer Public

    CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

    Python 115 8

  3. VectorInstitute/odyssey VectorInstitute/odyssey Public

    A toolkit for developing foundation models using Electronic Health Record (EHR) data.

    Python 30 13

  4. VectorInstitute/cyclops VectorInstitute/cyclops Public

    A toolkit for evaluating and monitoring AI models in clinical settings

    Python 80 13

  5. UnsearchableTO UnsearchableTO Public

    Forked from whyismynamerudy/UnsearchableTO

    Search anything in Toronto. (35,000+ Views on X!)

    TypeScript 5

  6. RadioCareBorealisAI RadioCareBorealisAI Public

    RadioCare: Fighting Inefficiencies in Medical Imaging

    Jupyter Notebook 4 3