Fix no-op tests

- Use wget instead of curl for gene index downloads - Set specific unzip/rm file instructions - Set pre-commit to use Python 3.11
AlexsLemonade · Oct 27, 2023 · 273afb3 · 273afb3
1 parent 504b31f
commit 273afb3
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diff --git a/.github/workflows/config.yml b/.github/workflows/config.yml
@@ -23,6 +23,8 @@ jobs:
           AWS_SECRET_ACCESS_KEY: ${{ secrets.OP_AWS_SECRET_ACCESS_KEY }}
 
       - uses: actions/setup-python@v3
+        with:
+          python-version: '3.11'
 
       - uses: hashicorp/setup-terraform@v2
         with:

diff --git a/workers/dockerfiles/Dockerfile.no_op b/workers/dockerfiles/Dockerfile.no_op
@@ -19,10 +19,10 @@ RUN mkdir -p gene_indexes
 WORKDIR /home/user/gene_indexes
 ENV ID_REFINERY_URL=https://zenodo.org/record/1410647/files/all_1536267482.zip
 RUN <<EOF
-curl -O $ID_REFINERY_URL
 echo $ID_REFINERY_URL > /etc/identifier_refinery_url
-unzip *.zip
-rm *.zip
+wget $ID_REFINERY_URL
+unzip all_1536267482.zip
+rm all_1536267482.zip
 EOF
 # End Noop-specific.