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Update docs/sce_file_contents.md
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Co-authored-by: Ally Hawkins <[email protected]>
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sjspielman and allyhawkins authored Jan 11, 2024
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Expand Up @@ -169,7 +169,7 @@ The following columns are included in the sample metadata data frame for all lib
| `disease_timing` | At what stage of disease the sample was obtained, either diagnosis or recurrence |
| `organism` | The organism the sample was obtained from (e.g., `Homo_sapiens`) |
| `is_xenograft` | Whether the sample is a patient-derived xenograft |
| `is_cell_line` | Whether the sample derived from a cell line |
| `is_cell_line` | Whether the sample was derived from a cell line |
| `development_stage_ontology_term_id` | [`HsapDv` ontology](http://obofoundry.org/ontology/hsapdv.html) term indicating developmental stage. If unavailable, `unknown` is used |
| `sex_ontology_term_id` | [`PATO`](http://obofoundry.org/ontology/pato.html) term referring to the sex of the sample. If unavailable, `unknown` is used |
| `organism_ontology_id` | [NCBI taxonomy](https://www.ncbi.nlm.nih.gov/taxonomy) term for organism, e.g. [`NCBITaxon:9606`](http://purl.obolibrary.org/obo/NCBITaxon_9606) |
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