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add processing rel link
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sjspielman committed Jan 11, 2024
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Expand Up @@ -182,7 +182,7 @@ In addition to providing separate objects for each library, we also offer an opt
This merged object contains the gene expression data for all libraries from a single project in a single file.
This section describes how these merged objects were prepared.

Following post-processing of each `SingleCellExperiment` (see XXX section above on post-processing) object, all objects belonging to a single ScPCA project were merged together.
Following post-processing of each `SingleCellExperiment` ([see the section above on post-processing](#processed-gene-expression-data)) object, all objects belonging to a single ScPCA project were merged together.
**These merged objects were not batch-corrected; they do not represent integrated objects.**

If at least one library in the given project contained ADT data from CITE-seq experiments, the associated ADT "alternative experiment" was also merged.
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