Merge pull request #352 from AlexsLemonade/main

Backport Changelog update to `development`
AlexsLemonade · Sep 24, 2024 · bd4ba32 · bd4ba32
2 parents aeb2306 + 36405f5
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diff --git a/docs/CHANGELOG.md b/docs/CHANGELOG.md
@@ -12,7 +12,7 @@ For more information about `AlexsLemonade/scpca-nf` versions, please see [the re
 <!-- PUT THE NEW CHANGELOG ENTRY RIGHT BELOW THIS -->
 <!-------------------------------------------------->
 
-## PLACEHOLDER FOR PORTAL WIDE METADATA
+## 2024.09.24
 
 * Metadata for all samples from all projects on the Portal can now be downloaded in a single tab-separated values file.
 * For more information on what to expect in the metadata file, see the {ref}`metadata section of the Downloadable files page <download_files:metadata>`.

diff --git a/docs/download_files.md b/docs/download_files.md
@@ -183,6 +183,7 @@ Because we do not perform demultiplexing to separate cells from multiplexed libr
 For more on the specific contents of multiplexed library `SingleCellExperiment` objects, see the {ref}`Additional SingleCellExperiment components for multiplexed libraries <sce_file_contents:additional singlecellexperiment components for multiplexed libraries>` section.
 
 The [metadata file](#metadata) for multiplexed libraries (`single_cell_metadata.tsv`) will have the same format as for individual samples, but each row will represent a particular sample/library pair, meaning that there may be multiple rows for each `scpca_library_id`, one for each `scpca_sample_id` within that library.
+In addition, an estimate of the total number of cells for each sample after demultiplexing will be found in the `sample_cell_estimate` (as opposed to the `sample_cell_count_estimate` column used for non-multiplexed samples).
 
 
 ## Merged object downloads