Merge pull request #607 from AlexsLemonade/allyhawkins/bump-cellassig…

…n-memory Bump initial memory and cpu request for CellAssign
AlexsLemonade · Dec 7, 2023 · 768c207 · 768c207
2 parents 30c7822 + d6f3a54
commit 768c207
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Showing 2 changed files with 8 additions and 2 deletions.
diff --git a/config/process_base.config b/config/process_base.config
@@ -21,6 +21,9 @@ process{
   withLabel: mem_32 {
     memory = {check_memory(32.GB * task.attempt)}
   }
+  withLabel: mem_128 {
+    memory = {check_memory(128.GB * task.attempt)}
+  }
   withLabel: cpus_2  {
     cpus = {check_cpus(2)}
   }
@@ -33,6 +36,9 @@ process{
   withLabel: cpus_12 {
     cpus = {check_cpus(12)}
   }
+  withLabel: cpus_24 {
+    cpus = {check_cpus(24)}
+  }
 }
 
 

diff --git a/modules/classify-celltypes.nf b/modules/classify-celltypes.nf
@@ -45,8 +45,8 @@ process classify_cellassign {
       mode: 'copy',
       pattern: "${cellassign_dir}"
     )
-  label 'mem_32'
-  label 'cpus_12'
+  label 'mem_128'
+  label 'cpus_24'
   tag "${meta.library_id}"
   input:
     tuple val(meta), path(processed_rds), path(cellassign_reference_file)