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Added script to add static page to HCAT hub
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@jack-brinkman
jack-brinkman committed Apr 30, 2024
1 parent 4b36134 commit ef68673
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19 changes: 19 additions & 0 deletions src/main/scripts/releases/6.8.1/addStaticReferenceAssessmentPageHCAT.js
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const fs = require('fs');

const pageContent = fs.readFileSync('./html/ref-assess-static.html', 'utf8');

db.setting.updateOne(
{ key: 'hcat.Request_Assessment_Records' },
{
$set: {
key: 'hcat.Request_Assessment_Records',
value: pageContent.replaceAll('\n', '\r\n'),
version: NumberLong(1)
},
$currentDate: {
lastUpdated: true,
dateCreated: true
},
},
{ upsert: true }
);
343 changes: 343 additions & 0 deletions src/main/scripts/releases/6.8.1/html/ref-assess-static.html
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<style>
.ref-assess-filters-list {
max-height: 200px;
overflow-y: scroll;
}

.ref-assess-filters-list > div {
cursor: pointer;
}

.ref-assess-filters-list > div.disabled {
cursor: default;
}

.ref-assess-identify-text {
font-family: 'Lato', sans-serif;
font-size: 18px;
}

.ref-assess-identify-card {
transition: all cubic-bezier(0, 0, 0.15, 1) 250ms;
}
</style>
<script type="text/javascript">
var RequestAssessmentRecordsModel = function (mvgMapping, hutchGroups) {
const self = this;

this.mvgs = Object.keys(mvgMapping);
this.mvgSelected = ko.observableArray([]);
this.climates = hutchGroups;
this.climateSelected = ko.observableArray([]);
this.deIdentify = ko.observable(false);
this.privacyPolicy = ko.observable(false);
this.isLoading = ko.observable(false);

this.isMvgSelected = function (filter) {
return self.mvgSelected.indexOf(filter) > -1;
};

this.isClimateSelected = function (filter) {
return self.climateSelected.indexOf(filter) > -1;
};

this.onMvgSelect = function (filter) {
// Only allow for user interaction if we're not already loading a request
if (!self.isLoading()) {
if (self.isMvgSelected(filter)) {
self.mvgSelected.remove(filter);
} else {
self.mvgSelected.push(filter);
}
}
};

this.onClimateSelect = function (filter) {
// Only allow for user interaction if we're not already loading a request
if (!self.isLoading()) {
if (self.isClimateSelected(filter)) {
self.climateSelected.remove(filter);
} else {
self.climateSelected.push(filter);
}
}
};

this.onRequestRecords = function () {
// Update the loading flag
self.isLoading(true);

const selectedMvgGroups = self
.mvgSelected()
.map((filter) => mvgMapping[filter]);
const vegetationStructureGroups = Array.from(new Set(selectedMvgGroups));
const climateGroups = self.climateSelected();

$.ajax('/referenceAssessment/requestRecords', {
method: 'POST',
data: JSON.stringify({
vegetationStructureGroups,
climateGroups,
deIdentify: self.deIdentify(),
}),
contentType: 'application/json',
success: ({ message }) => {
if (message) bootbox.alert(message);
setTimeout(window.location.replace('/hcat/bioActivity/list'), 3000);
},
error: ({ responseJSON }) => {
if (responseJSON && responseJSON.message) {
bootbox.alert(responseJSON.message);
} else {
bootbox.alert('An unknown error occurred, please try again later.');
}
self.isLoading(false);
},
});

console.log(
vegetationStructureGroups,
climateGroups,
self.privacyPolicy(),
self.deIdentify()
);
};
};
</script>
<div class="container">
<div class="row mt-4">
<div class="col-12">
<div class="f-flex flex-column h-100 p-3">
<h2>Select your areas of expertise</h2>
<h4 class="text-secondary">Major Vegetation Groups</h4>
<p>
For the Image Assessment task, we ask that you provide an ecosystem
condition score for a suite of photographic images of different
habitats allocated to you based on the Major Vegetation Groups and
Hutchison geographic agro-climatic classifications that you nominate
as being within your area of expertise. Scoring these images will
enable your Site Condition Assessments to be calibrated with other
participants.
</p>
<p>
Please select all of the Major Vegetation Groups (MVG) and Hutchison
geographic agro-climatic classifications in which you have expertise.
</p>
<p>
After nominating your areas of expertise, please indicate if you would
like your assessments to be de-identified and confirm you have read,
understood, and accepted the privacy, IP and ethics arrangements for
this project. These arrangements are included in the HCAT instructions
manual accessible via the HCAT homepage.
</p>
<div class="d-flex justify-content-center w-100 mb-4">
<img
src="https://biocollect.ala.org.au/document/download/2024-03/mvgs.png"
/>
</div>
<div class="d-flex flex-column card bg-white ref-assess-filters-list">
<!-- ko foreach: mvgs -->
<div
data-bind="click: $parent.onMvgSelect, css: { disabled: $parent.isLoading() }"
class="d-flex flex-row dropdown-item align-items-center"
>
<span
data-bind="style: { opacity: $parent.isMvgSelected($data) ? 1 : 0 }"
class="fa fa-check mr-3"
></span>
<p
data-bind="text: $data"
style="text-wrap: wrap; margin-bottom: 0px"
></p>
</div>
<!-- /ko -->
</div>
<h4 class="text-secondary mt-4">Agro-climatic Classifications</h4>
<div class="d-flex justify-content-center w-100 mb-4">
<img
width="375"
src="https://biocollect.ala.org.au/document/download/2024-03/agroclimate.png"
/>
</div>
<div class="d-flex flex-column card bg-white ref-assess-filters-list">
<!-- ko foreach: climates -->
<div
data-bind="click: $parent.onClimateSelect, css: { disabled: $parent.isLoading() }"
class="d-flex flex-row dropdown-item align-items-center"
>
<span
data-bind="style: { opacity: $parent.isClimateSelected($data) ? 1 : 0 }"
class="fa fa-check mr-3"
></span>
<p
data-bind="text: $data"
style="text-wrap: wrap; margin-bottom: 0px"
></p>
</div>
<!-- /ko -->
</div>
</div>
</div>
</div>
<div class="row">
<div class="col-6">
<div class="py-3 pl-3">
<button
type="button"
data-bind="click: function() { deIdentify(false) }, css: { 'bg-secondary': !deIdentify() }, enable: !isLoading()"
class="card w-100 d-flex flex-column px-4 py-3 ref-assess-identify-card"
>
<span
data-bind="css: { 'text-white': !deIdentify() }"
class="fa fa-user fa-2x"
></span>
<span
data-bind="css: { 'text-white': !deIdentify() }"
class="mt-3 ref-assess-identify-text"
>Identify my data</span
>
</button>
</div>
</div>
<div class="col-6">
<div class="py-3 pr-3">
<button
type="button"
data-bind="click: function() { deIdentify(true) }, css: { 'bg-secondary': deIdentify() }, enable: !isLoading()"
class="card w-100 d-flex flex-column px-4 py-3 ref-assess-identify-card"
>
<span
data-bind="css: { 'text-white': deIdentify() }"
class="fa fa-user-secret fa-2x"
></span>
<span
data-bind="css: { 'text-white': deIdentify() }"
class="mt-3 ref-assess-identify-text"
>De-identify my data</span
>
</button>
</div>
</div>
</div>
<div class="row">
<div class="col-12">
<div class="px-3 mt-2">
<p class="text-secondary" data-bind="if: deIdentify()">
Only members of the HCAT project team will be able to see your name
associated with the condition assessments you provide. When HCAT data
is included in publicly available material (e.g. publications,
reports, presentations, or data repositories) your contributions will
be anonymised. Your Image Aassessments will not be made public
regardless of your selection - they are used for calibration purposes
only
</p>
<p class="text-secondary" data-bind="ifnot: deIdentify()">
Your individual Site Condition Assessments will be credited in
publicly available material. Your Image Aassessments will not be made
public regardless of your selection - they are used for calibration
purposes only
</p>
</div>
</div>
</div>
<div class="row">
<div class="col-12">
<hr />
<div class="px-4 mt-3">
<input
type="checkbox"
class="form-check-input"
data-bind="checked:privacyPolicy"
/>
<label>
<small>
I agree to be a part of this project and have read, understood and
accept the privacy, IP and ethics arrangements for this project.
These arrangements are included in the HCAT instructions manual
accessible via the HCAT homepage.</small
>
</label>
</div>
</div>
</div>
<div class="row">
<div class="col-12 pt-2">
<div class="d-flex justify-content-center p-3">
<button
data-bind="click: onRequestRecords, css: {disabled: mvgSelected().length === 0 || climateSelected().length === 0 || !privacyPolicy() || isLoading()}, enable: mvgSelected().length > 0 && climateSelected().length > 0 && !isLoading() && privacyPolicy()"
class="btn btn-primary justify-self-end full-width"
>
<i data-bind="visible: !isLoading()" class="far fa-copy mr-2"></i>
<span
data-bind="visible: isLoading()"
class="fa fa-spin fa-spinner mr-2"
></span>
Request Records
</button>
</div>
</div>
</div>
<script type="text/javascript">
const mvgMapping = {
'1 - Rainforests and Vine Thickets':
'G1 - Wet and closed forests and thickets',
'2 - Eucalypt Tall Open Forests':
'G1 - Wet and closed forests and thickets',
'3 - Eucalypt Open Forests': 'G2 - Open forest and woodland',
'4 - Eucalypt Low Open Forests': 'G2 - Open forest and woodland',
'5 - Eucalypt Woodlands': 'G2 - Open forest and woodland',
'6 - Acacia Forests and Woodlands': 'G2 - Open forest and woodland',
'7 - Callitris Forests and Woodlands': 'G2 - Open forest and woodland',
'8 - Casuarina Forests and Woodlands': 'G2 - Open forest and woodland',
'9 - Melaleuca Forests and Woodlands': 'G2 - Open forest and woodland',
'10 - Other Forests and Woodlands': 'G2 - Open forest and woodland',
'11 - Eucalypt Open Woodlands': 'G2 - Open forest and woodland',
'12 - Tropical Eucalypt Woodlands/Grasslands':
'G2 - Open forest and woodland',
'13 - Acacia Open Woodlands': 'G3 - Shrublands',
'14 - Mallee Woodlands and Shrublands': 'G3 - Shrublands',
'15 - Low Closed Forests and Tall Closed Shrublands': 'G3 - Shrublands',
'16 - Acacia Shrublands': 'G3 - Shrublands',
'17 - Other Shrublands': 'G3 - Shrublands',
'18 - Heathlands': 'G3 - Shrublands',
'19 - Tussock Grasslands': 'G4 - Grasslands',
'20 - Hummock Grasslands': 'G4 - Grasslands',
'21 - Other Grasslands, Herblands, Sedgelands and Rushlands':
'G4 - Grasslands',
'22 - Chenopod Shrublands, Samphire Shrublands and Forblands':
'G4 - Grasslands',
'23 - Mangroves': 'G3 - Shrublands',
'27 - Naturally Bare - sand, rock, claypan, mudflat': 'G4 - Grasslands',
'32 - Mallee Open Woodlands and Sparse Mallee Shrublands':
'G3 - Shrublands',
'99 - Unknown/No Data': 'G2 - Open forest and woodland',
};

const hutchGroups = [
'B1 - Very cold winters with summers too short for crop growth',
'B2 - Less severe winters and longer moist summers suitable for some crops',
'D5 - Moisture availability high in winter-spring, moderate in summer, most plant growth in spring',
'E1 - Classic "Mediterranean" climate with peaks of growth in winter and spring and moderate growth in winter',
'E2 - "Mediterranean" climate, but with drier cooler winters and less growth than E1',
'E3 - Most plant growth in summer, although summers are moisture limiting. Temperature limits growth in winter',
'E4 - Growth is limited by moisture rather than temperature and the winters are mild. Growth is relatively even through the year',
'E6 - Semi-arid climate that is too dry to support field crops. Soil moisture tends to be greatest in winter',
'E7 - Moisture is the main limit on crop growth. Growth index lowest in spring',
'F3 - Cooler end of the warm, wet sub-tropical climates',
'F4 - Warmer and wetter than F3',
'G - Desert, supporting very little plant growth due to water limitation',
'H - Semi-arid, with some growth in the warm season, but too dry for cropping',
'I1 - Strongly developed wet and dry seasons with plant growth determined by moisture availability',
'I2 - Temperature and moisture are more seasonal than for I1 and the growing season is shorter',
'I3 - This has cooler winters than I1 and I2 with a growing season lasting at least six months',
'J1 - Moisture and temperature regime supports growth for 8-9 months of the year, with a 3-4 month dry season',
];

const requestAssessmentRecordsVM = new RequestAssessmentRecordsModel(
mvgMapping,
hutchGroups
);

ko.applyBindings(requestAssessmentRecordsVM);
</script>
</div>

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